BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03060.1
Length=2243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340454 jgi|Araly1|340454|fgenesh1_pg.C_scaffold_3000217 2224 0.0
Ahg893605 jgi|Araly1|893605|Al_scaffold_0006_1601 1764 0.0
> Ahg340454 jgi|Araly1|340454|fgenesh1_pg.C_scaffold_3000217
Length=1929
Score = 2224 bits (1204), Expect = 0.0
Identities = 1317/1372 (96%), Gaps = 6/1372 (0%)
Strand=Plus/Plus
Query 636 GGCCGAGAATGAGTTCCATAGAACAAGAAATCAAGAACTTGTGAAAATGCAAGAAGATTC 695
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 546 GGCCGAGAATGAGTTCCATAGAGCAAGAAATCAAGAACTTGTGAAAATGCAAGAAGATTC 605
Query 696 AGCAATTAGGCAGGAACAAGCTCGACGAGCTACTGAGGAACAGATCCAGGCGCAGAGACG 755
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 606 GGCAATTAGGCAGGAACAAGCTCGACGAGCTACTGAGGAGCAGATCCAGGCGCAGAGACG 665
Query 756 CCAAACTGAGAGGGAGAAGGCTGAGATTGAACGTGAGACCATCAGGGTCAAAGCTATAGC 815
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 ACAAACTGAGAGGGAGAAGGCTGAGATTGAACGTGAGACCATCAGGGTCAAAGCTATAGC 725
Query 816 AGAAGCGGAAGGAAGAGCCCATGAAGCTAGGCTTGCTGAAGATGTAAACAGGAGAATGCT 875
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 726 AGAAGCGGAAGGAAGAGCCCATGAAGCTAGGCTTGCTGAAGATGTAAACAGAAGAATGCT 785
Query 876 TGTTGATCGTGCAAATGCAGAAAGAGAGAAATGGGTTGCTGCCATAAACACAACATTCGA 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 786 TGTTGATCGTGCAAATGCAGAAAGAGAGAAATGGGTTGCTGCCATAAACACAACATTTGA 845
Query 936 CCATATTGGAGGCGGTTTACGTGCTATTCTGACGGATCAAAATAAACTGATTGTCGCTGT 995
|||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 846 CCATATTGGAGGCGGTTTACGTGCAATTCTGACGGATCAAAATAAACTGGTTGTTGCTGT 905
Query 996 TGGGGGTGTAACTGCTCTGGCAGCTGGAATCTACACAACGAGAGAAGGTGCAAAGGTTAT 1055
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||
Sbjct 906 TGGGGGTGTAACTGCTCTAGCAGCTGGAATCTACACAACGAGAGAAGGTGCAAGGGTCAT 965
Query 1056 CTGGAGCTATGTGGACAGAATATTAGGACAACCATCGTTAATCCGAGAATCATCAAGAGG 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 CTGGAGCTATGTGGACAGAATATTAGGACAACCATCGTTAATCCGAGAATCATCAAGAGG 1025
Query 1116 CAAGTACCCTTGGTCTGGTTCGCTTTCTCGTGTAATGTCCACATTGCGGGGTAAGGAGTC 1175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1026 CAAGTACCCTTGGTCTGGTTCGCTTTCTCGTGTAATGTCCACATTGCGGGGTAAGGAGCC 1085
Query 1176 AGCTTCCAAAAATGGAAAAAGGTTCGGTGATGTTATTTTGCATCCTCCGCTAGCAAA-GA 1234
||||||||||| |||| || |||| |||||||||||| |||||||||| || |||| ||
Sbjct 1086 AGCTTCCAAAAGTGGACAAGGGTTTGGTGATGTTATTCTGCATCCTCCCCT-TCAAAGGA 1144
Query 1235 GAATTGAGCACCTAGCTACCT-CAACCGCCAACACAAAACTCCACCAGGCTCCTTTCCGA 1293
||||||||||| |||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 1145 GAATTGAGCACTTAGCTA-ATGCAACCGCCAACACAAAACTCCATCAGGCTCCTTTCCGA 1203
Query 1294 AATATTCTTCTCCACGGTCCTCCAGGAACAGGAAAAACAATGGCGGCCAGAGAGCTGGCT 1353
||| | ||| || ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1204 AATGTGCTTTTCTACGGTCCTCCAGGAACAGGAAAAACAATGGCTGCTAGAGAGCTGGCT 1263
Query 1354 CGTAAATCTGGTTTGGATTATGCACTGATGACTGGTGGAGATGTTGCTCCCCTTGGAGCT 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1264 CGTAAATCTGGTTTGGATTATGCACTGATGACTGGTGGAGATGTTGCTCCCCTTGGATCT 1323
Query 1414 CAGGCTGTTACAAAGATTCACGAACTGTTTGATTGGGGCAAAAAGTCTAAGAGAGGTTTA 1473
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1324 CAGGCTGTTACAAAAATTCACGAATTGTTTGATTGGGGCAAAAAGTCTAAGAGAGGTTTA 1383
Query 1474 TTGCTCTTCATTGATGAAGCCGATGCATTTTTGTGCGAGAGGAACAAAACATACATGAGT 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 TTGCTCTTCATTGATGAAGCCGATGCATTTTTGTGCGAGAGGAACAAAACATACATGAGT 1443
Query 1534 GAAGCCCAAAGGAGTGCTCTAAATGCTCTTCTCTTCCGCACGGGTGATCAATCCAAAGAC 1593
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1444 GAAGCCCAAAGGAGTGCTCTAAATGCTCTTCTCTTTCGCACGGGTGATCAGTCCAAAGAC 1503
Query 1594 ATAGTCTTAGCACTAGCTACAAACCGACCTGGTGACTTAGACTCAGCTGTGGCTGACCGT 1653
|||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1504 ATAGTCTTAGCACTTGCTACTAACCGACCTGGTGACCTAGACTCAGCTGTGGCTGACCGT 1563
Query 1654 GTCGATGAAGTTCTCGAATTCCCCTTACCTGGAGAAGAAGAGCGGTTCAAGCTTTTAAAC 1713
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 GTCGATGAAGTTCTTGAATTCCCCTTACCTGGAGAAGAAGAGCGGTTCAAGCTTTTAAAC 1623
Query 1714 CTCTATCTAGAAAAGTACATAGCTGAGGCTGGTCCAAGCAAGCCGGGTTTGTTCGACCGC 1773
|| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1624 CTATATCTAGAAAAGTACATAGCTGAGGCTGGTCCAAAAAAGCCGAGTTTGTTCGACCGC 1683
Query 1774 CTCTTCAAGAAAGAACAGCAGAAGATCGAGATAAAGGGTGTCACGGAGGAGCTCTTAAAG 1833
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1684 CTCTTCAAGAAAGAACAGCAGAAGATCGAGATAAAGGGTGTCACTGAGGAGCTCTTAAAG 1743
Query 1834 GAAGCGGCTGCAAAAACCGAAGGGTTTTCAGGTAGAGAAATTGCGAAACTGATGGCAAGT 1893
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1744 GAAGCAGCTGCAAAAACCGAAGGGTTTTCAGGTAGAGAGATTGCGAAACTGATGGCAAGT 1803
Query 1894 GTTCAAGCAGCTGTGTATGGAAGTGAGGACTGTGTGTTGGACTCTATGCT-TTTCAGAGA 1952
|||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 1804 GTTCAAGCAGCTGTTTATGGAAGTGAGGACTGTGTGTTGGACTCTGTGCTATTT-AGAGA 1862
Query 1953 GGTTGTTGATTACAAAGTTGCAGAGCATCAACAGAGAAGGAAATTGGCTGGA 2004
||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1863 GGTTGTTGAGTACAAAGTTGCAGAGCATCAACAGAGAAGAAAATTGGCTGGA 1914
Score = 782 bits (423), Expect = 0.0
Identities = 486/515 (94%), Gaps = 9/515 (2%)
Strand=Plus/Plus
Query 133 ATGGCTCAGAAATGTGCGATTGGTTTGATTTCAGCCCTAGCAGCTTCGGCTTCTCTTGCG 192
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCTCAGAAATGTGCGATTGGTTTGATTTCAGCCCTAGCAGCATCGGCTTCTCTTGCG 60
Query 193 AAATCTAAAGTCGCTTCTGCAGATGGTCCCTTCAATCTCTCTGGGTTCTCTACTTCTGCG 252
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 CAATCTAAAGTCGCTTCTGCAGATGGTCCTTTCAATCTCTCTGGATTCTCTACTTCTGCG 120
Query 253 AATCCTCAGCAGCAG--G-CTTCTC---CTC---CTCCACCGTCGTTGGCTGGTGAAGAA 303
||||||||||||||| | | |||| ||| ||||||||| |||| |||||||
Sbjct 121 AATCCTCAGCAGCAGCCGCCGTCTCAAACTCAGAAGCCACCGTCGACAGCTGCTGAAGAA 180
Query 304 TCTTCAGCTCCTCCGCGAGCTCGCAATGATAATCCGAGGACAAGTTCCGGTGGTTTCGAT 363
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 181 TCTTCAGCTCCTCCGCGAGCTCGGAATGATAATCCTAGGACGAGTTCCGGTGGTTTCGAT 240
Query 364 CCGGAGGCACTGGAGCGAGGTGCTAAAGCCTTGAAAGAGATTAACCATTCCTCTTACGCG 423
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 CCGGAGGCACTGGAGCGAGGTGCTAAAGCCTTGAAAGAGATTAACAATTCCTCTTACGCG 300
Query 424 AAAAAGGTTTTTGAAAGTATTAAGCAGCAAGAAGAGACAAAGCAAACTGAGTTTGCAACG 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAAAGGTTTTTGAAAGTATTAAGCAGCAAGAAGAGACAAAGCAAACTGAGTTTGCAACC 360
Query 484 AAGGCGCAAGAGTTTAAAGCTATGCAAGCCCAAGCTGAAACTGAGAGGCATAAGGTAATA 543
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 361 AAGGCGCAAGAGTTTAAAGCTATGCAAGCACAAGCTGAAACTGAGAGGCATAAGGTTATA 420
Query 544 TATGATGAACAGAAAAAGCTTGCTCAGCACCAAGCACAGACAAAATCGCAGATGGCCCGT 603
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 TATGATGAACAGAAAAAACTTGCTCAGCACCAAGCACAGACAAAATCACAGATGGCCCGT 480
Query 604 TATGAAGATGACTTGGCAAGAAAGAGGATGCAGGC 638
|||||||||||||||||||||||||||||||||||
Sbjct 481 TATGAAGATGACTTGGCAAGAAAGAGGATGCAGGC 515
> Ahg893605 jgi|Araly1|893605|Al_scaffold_0006_1601
Length=1932
Score = 1764 bits (955), Expect = 0.0
Identities = 1492/1749 (85%), Gaps = 46/1749 (3%)
Strand=Plus/Plus
Query 282 ACCGTC-GTTGGCTGGTGAAGAATCTTCA-GCTCCTCCGC-GAGCTC-GCAATGATAATC 337
|||||| ||| |||| |||||||| | | |||||||| | || || | || ||||||
Sbjct 180 ACCGTCTGTT-ACTGGCGAAGAATC-TGATGCTCCTCCTCGGA-TTCAG-AACAATAATC 235
Query 338 CGAGGACAAGTTCCGGTGG-TTTCGATCCGGAGGCACTGGAGCGAGGTGCTAAA-GCCTT 395
|||| |||| ||| | ||| ||| |||||||| || || |||||||| || ||| |||||
Sbjct 236 CGAGAACAACTTCAGCTGGATTT-GATCCGGAAGCGCTTGAGCGAGGAGC-AAAGGCCTT 293
Query 396 GAAAGAGATTAACCATTCCTCTTACGCGAAAAAGGTTTTTGAAAGTATTAAGCA-GCAAG 454
||| | ||| ||| | || || | || |||||||| ||||||||||||||| | ||||
Sbjct 294 GAAGGGGATCAACAACTCAGCTCATGCCAAAAAGGTATTTGAAAGTATTAAG-ACTCAAG 352
Query 455 AAGAGACAAAGCAAACTGAGTTTGCAACGAAGGCGCAAGAGTTTAAAGCTATGCAAGCCC 514
||||||| | ||| |||||||| | | |||||||| |||||||||||||||||| |||
Sbjct 353 AAGAGACGAGGCAGGCTGAGTTTACCGCTAAGGCGCAGGAGTTTAAAGCTATGCAATCCC 412
Query 515 AAGCTGAAACTGAGAGGCATAA-GGTAATATATGATGAACAGAA-AAAGCTTGCTCAGCA 572
|||||||| |||||||||| || |||||||||||| |||||||| ||| |||||||||||
Sbjct 413 AAGCTGAAGCTGAGAGGCA-AAGGGTAATATATGAGGAACAGAAGAAA-CTTGCTCAGCA 470
Query 573 CCAAGCACAGACAAAATCGCAGATGGCCCGTTATGAAGATGACTTGGCAAGAAAGAGGAT 632
||||||||| |||||||| ||||||||||| ||||||||||| || |||||||| |||||
Sbjct 471 CCAAGCACAAACAAAATCACAGATGGCCCGCTATGAAGATGAGTTAGCAAGAAAAAGGAT 530
Query 633 GCAGGCCGAGAATGAGTTCCATAGAACAAGAAATCAAGAACTTGTGAAAATGCAAGAAGA 692
|||||| ||||||||| ||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 531 GCAGGCTGAGAATGAGGCCCAGAGAACAAGAAACCAAGAACTTGTGAAAATGCAGGAAGA 590
Query 693 TTCAGCAATTAGGCAGGAACAAGCTCGACGAGCTACTGAGGAACAGATCCAGGCGCAGAG 752
||||||||||||| |||| |||||||||||||||||| ||| |||| || || |||||
Sbjct 591 ATCAGCAATTAGGCGGGAAGTAGCTCGACGAGCTACTGAAGAAGAGATTCAAGCACAGAG 650
Query 753 ACGCCAAACTGAGAGGGAGAAGGCTGAGATTGAACGTGAGACCATCAGGGTCAAAGCTAT 812
||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 651 ACGACAAACAGAGAGGGAGAAAGCTGAGATTGAACGTGAGACAATCAGGGTCAAAGCTAT 710
Query 813 AGCAGAAGCGGAAGGAAGAGCCCATGAAGCTAGGCTTGCTGAAGATGTAAACAGGAGAAT 872
|||||||| ||||| ||||| | |||| | | |||| |||| ||||| |||||||||||
Sbjct 711 GGCAGAAGCTGAAGGGAGAGCTCGTGAATCAAAGCTTTCTGAGGATGTTAACAGGAGAAT 770
Query 873 GCTTGTTGATCGTGCAAATGCAGAAAGAGAGAAATGGGTTGCTGCCATAAACACAACATT 932
|||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||
Sbjct 771 GCTTGTTGATCGTGCAAATGCAGAAAGAGAGAAATGGGTTTCTGCCATCAATACTACATT 830
Query 933 CGACCATATTGGAGGCGGTTTACGTGCTATTCTGACGGATCAAAATAAACTGATTGTCGC 992
||| ||||||||||| || || ||| | ||||| |||||||||||||| || ||||| ||
Sbjct 831 CGATCATATTGGAGGGGGCTTGCGTACCATTCTAACGGATCAAAATAAGCTAATTGTTGC 890
Query 993 TGTTGGGGGTGTAACTGCTCTGGCAGCTGGAATCTACACAACGAGAGAAGGTGCAAAGGT 1052
|||||| ||| |||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 891 TGTTGGAGGTCTAACCGCTCTTGCAGCTGGGATCTACACAACGAGAGAAGGTGCCAAGGT 950
Query 1053 TATCTGGAGCTATGTGGACAGAATATTAGGACAACCATCGT-TAATCCGAGAATCATCAA 1111
|||||||||||| ||||| ||||||||||||||||| || | |||| ||||||||||||
Sbjct 951 TATCTGGAGCTACGTGGATAGAATATTAGGACAACCTTC-TCTAATTAGAGAATCATCAA 1009
Query 1112 GAGGCAAGTACCCTTGGTCTGGTTC-GCTTTCTCGTGTAATGTCCACATTGCGGGGT--- 1167
|||| |||||||||||||||||||| |||| ||||||| |||||||||||||||||
Sbjct 1010 GAGGAAAGTACCCTTGGTCTGGTTCCGCTT-CTCGTGTCTTGTCCACATTGCGGGGTGGT 1068
Query 1168 ---AAGGAGTC-AGCTTCCAAAAATGGAAAAAGGTTCGGTGATGTTATTTTGCATCCTCC 1223
|||||||| | ||||||||||||||||| |||| |||||||||||||||| |||| |
Sbjct 1069 GGTAAGGAGTCTA-CTTCCAAAAATGGAAAAGGGTTTGGTGATGTTATTTTGCGTCCTGC 1127
Query 1224 GCTAGCAAAGAGAATTGAGCACCTAGCTACCT-CAACCGCCAACACAAAA-CTCCACCAG 1281
|| | ||||||||| || || ||||||| | |||| |||||||||||| | ||||||
Sbjct 1128 TCTTGAAAAGAGAATCGAACAGCTAGCTAA-TGCAACTGCCAACACAAAAGC-CCACCAA 1185
Query 1282 GCTCCTTTCCGAAATATTCTTCTCCACGGTCCTCCAGGAACAGGAAAAACAATGGCGGCC 1341
|| |||||||||||||| ||| || ||||||| ||||||||||| || |||||||| |||
Sbjct 1186 GCACCTTTCCGAAATATACTTTTCTACGGTCCACCAGGAACAGGGAAGACAATGGCTGCC 1245
Query 1342 AGAGAGCTGGCTCGTAAATCTGGTTTGGATTATGCACTGATGACTGGTGGAGATGTTGCT 1401
||||||||||||||| ||||||| | ||||||||| ||||||| |||||||||||||||
Sbjct 1246 CGAGAGCTGGCTCGTAGATCTGGTCTAGATTATGCATTGATGACGGGTGGAGATGTTGCT 1305
Query 1402 CCCCTTGGAGCTCAGGCTGTTACAAAGATTCACGAACTGTTTGATTGGGGCAAAAAGTCT 1461
|| ||||||||||||||||| |||||||| ||| |||||||||| ||| |||||| |||
Sbjct 1306 CCACTTGGAGCTCAGGCTGTAACAAAGATACACCAACTGTTTGACTGGTCCAAAAAATCT 1365
Query 1462 AAGAGAGGTTTATTGCTCTTCATTGATGAAGCCGATGCATTTTTGTGCGAGAGGAACAAA 1521
|||||||| || ||||||||||| |||||||||||||||||||| |||||| | ||||||
Sbjct 1366 AAGAGAGGCTTGTTGCTCTTCATCGATGAAGCCGATGCATTTTTATGCGAGCGTAACAAA 1425
Query 1522 ACATACATGAGTGAAGCCCAAAGGAGTGCTCTAAATGCTCTTCTCTTCCGCACGGGTGAT 1581
||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1426 ACATACATGAGCGAAGCCCAAAGGAGTGCACTAAATGCACTCCTCTTCCGCACGGGTGAC 1485
Query 1582 CAATCCAAAGACATAGTCTTAGCACTAGCTACAAACCGACCTGGTGA-CTTAGACTCAGC 1640
|| ||||||||||||||| |||| || || |||||| |||||||||| || |||||||||
Sbjct 1486 CAGTCCAAAGACATAGTCCTAGCGCTTGCCACAAACAGACCTGGTGATCT-AGACTCAGC 1544
Query 1641 TGTGGCTGACCGTGTCGATGA-A-GTTCTCGAATTCCCCTTACCTGGAGAAGAAGAGCGG 1698
||| |||||||| ||||||| | | | | || |||||||| |||||||||||||||||
Sbjct 1545 AGTGTCTGACCGTATCGATGAGACGCT-T-GAGTTCCCCTTGCCTGGAGAAGAAGAGCGC 1602
Query 1699 TTCAAGCTTTTAAACCTCTATCTAGAAAAGTACATAGCTGAGGCTGGTCCAAGCAAGCCG 1758
||||||||| |||||||||| ||||||||||||||| || ||||| || || ||||||
Sbjct 1603 TTCAAGCTTCTAAACCTCTACCTAGAAAAGTACATATCTAAGGCTAATCTAAAAAAGCCG 1662
Query 1759 GGTTTGTTCGACCGCCTCTTCAAGAAAGAACAGCAGAAGATCGAGATAAAGGGTGTCACG 1818
|||||| || | |||| ||||| ||||| |||||||| || | |||||| || | ||
Sbjct 1663 GGTTTGCTCCAAAGCCTTTTCAAAAAAGAGCAGCAGAAAATTGGGATAAAAGGCATTACT 1722
Query 1819 GAGGAGCTCTT-AAAGGAAGCGGCTGCAAAAACCGAAGGGTTTTCAGGTAGAGAAATTGC 1877
||||| ||| | |||| |||| || || ||||| |||||||||||||||||||||| ||
Sbjct 1723 GAGGATCTCCTGAAAG-AAGCTGCCGCCAAAACAAAAGGGTTTTCAGGTAGAGAAATCGC 1781
Query 1878 GAAACTGATGGCAAGTGTTCAAGCAGCTGTGTATGGAAGTG-AGGACTG-TGTGTTGGAC 1935
|||| |||||||||| |||||||| |||||||||||||| | | |||| | | ||||||
Sbjct 1782 GAAATTGATGGCAAGCGTTCAAGCTGCTGTGTATGGAAGCGCAA-ACTGCT-TATTGGAC 1839
Query 1936 TCTATGCTTTTCAGAGAGGTTGTTGATTACAAAGTTGCAGAGCATCAACAGAGAAGGAAA 1995
| | |||||||||||||| ||||||||||||| ||||||||||||||||||| |||
Sbjct 1840 GCAACCCTTTTCAGAGAGGTCATTGATTACAAAGTCGCAGAGCATCAACAGAGAAAAAAA 1899
Query 1996 TTGGCTGGA 2004
| ||||||
Sbjct 1900 CTAGCTGGA 1908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84446073165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5