BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03080.1
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903120 jgi|Araly1|903120|Al_scaffold_0003_248 1698 0.0
Ahg941198 jgi|Araly1|941198|scaffold_601742.1 907 0.0
Ahg472786 jgi|Araly1|472786|fgenesh2_kg.1__2740__AT1G26320.1 876 0.0
Ahg941200 jgi|Araly1|941200|scaffold_601744.1 874 0.0
Ahg893609 jgi|Araly1|893609|Al_scaffold_0006_1605 701 0.0
> Ahg903120 jgi|Araly1|903120|Al_scaffold_0003_248
Length=1056
Score = 1698 bits (919), Expect = 0.0
Identities = 1013/1058 (96%), Gaps = 7/1058 (1%)
Strand=Plus/Plus
Query 24 ATGGCAACCTCAGGCAAT--G-CGACGGTGGCCAATAAGCAGGTCATACTGCGAGATTAC 80
||||||||| || ||||| | |||||||| |||| |||||||| |||||||||||||||
Sbjct 1 ATGGCAACCACATGCAATGCGACGACGGTGACCAACAAGCAGGTGATACTGCGAGATTAC 60
Query 81 GTCACCGGTTTCCCCAAGGAATCAGACCTCATCTTCACCGATTCCACCATCGATTTAAAG 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCACCGGTTTCCCCAAGGAATCAGACCTCATCTTCACCGATTCCACCATCGATTTAAAG 120
Query 141 ATTCCGGAGGGATCCAAGACGGTTCTGGTGAAGAATCTCTACTTGTCTTGCGATCCTTAC 200
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTCCGGAGGGATCGAAGACGGTTCTGGTGAAGAATCTCTACTTGTCTTGCGATCCTTAC 180
Query 201 ATGCGCATTCGCATGGGGAA-GCCCGATCCCGGCACTGCTGCGCTCGCTCCACATTACAT 259
|||||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 181 ATGCGCATTCGCAT-GGGAATTCCCGATCCCGGTACTGCTGCGCTCGCTCCACCTTACAT 239
Query 260 TCCTGGCGAGCCAATTTATGGGTTTTCAGTGTCAAAAGTGATAGATTCTGGGCATCCAGA 319
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCCGGCGAGCCAATTTATGGGTTTTCAGTGTCAAAAGTGATAGATTCTGGGCATCCAGA 299
Query 320 TTACAAAAAGGGAGACTTACTTTGGGGATTAGTTGGATGGGGGGAGTACAGTCTTATCAC 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 TTACAAAAAGGGAGACTTACTTTGGGGATTAGTTGGATGGGGGGAGTACAGTCTTATAAC 359
Query 380 TCCAGATTTTTCACATTACAAGATCCAACACACCGATGTTCCCTTATCCTACTACACTGG 439
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 TCCAGATTTTTCACATTACAAGATCCAACACACCGATGTTCCGTTATCCTACTACACTGG 419
Query 440 ACTTCTCGGTATGCCCGGTATGACTGCCTATGCTGGATTTTATGAAATATGTTCTCCTAA 499
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 420 ACTTCTCGGTATGCCTGGTATGACTGCCTATGCTGGGTTTTATGAAATCTGTTCTCCTAA 479
Query 500 GAAAGGAGAAACCGTATTCGTGTCAGCTGCGTCTGGTGCAGTTGGTCAGCTCGTGGGACA 559
|||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 480 GAAAGGAGAAACTGTCTTCGTGTCAGCTGCATCGGGTGCAGTTGGTCAGCTCGTGGGACA 539
Query 560 ATTTGCAAAGATTATGGGCTGCTATGTTGTTGGAAGTGCAGGCAGTAATGAAAAGGTTGA 619
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 ATTTGCAAAGATTATGGGCTGCTATGTCGTTGGAAGTGCAGGCAGTAATGAAAAGGTTGA 599
Query 620 TCTTCTCAAGAACAAATTCGGGTTTGATGATGCATTCAATTACAAAGCAGAGCCAGACCT 679
||||||||||||||| |||||||||||||| |||||||||||||||| |||| ||||||
Sbjct 600 TCTTCTCAAGAACAAGTTCGGGTTTGATGACGCATTCAATTACAAAGAAGAGAAAGACCT 659
Query 680 TAATGCTGCCCTGAAGAGGTGTTTCCCGGAAGGAATCGACATATACTTTGAGAATGTAGG 739
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 TAATGTTGCCCTGAAGAGGTGTTTCCCGGAAGGAATCGACATATACTTTGAGAACGTAGG 719
Query 740 AGGCAAAATGCTAGACGCAGTGCTCCTAAACATGAAACTACACGGCCGTATCGCAGTATG 799
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 AGGCAAAATGCTAGACGCAGTGCTCCTAAACATGAAGCTACACGGCCGTATCGCAGTATG 779
Query 800 TGGTATGATCTCACAGTACAACCTTGAGGACCAAGAAGGTGTACACAACCTAGCAAACGT 859
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 TGGTATGATCTCACAGTACAACCTTGAGGACCAGGAAGGTGTACACAACCTAGCAAACGT 839
Query 860 GATCTACAAGCGGATTCGGATTAAAGGGTTCGTGGTCTCTGATTACTTCGACAAACACTT 919
|||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||
Sbjct 840 GATCTACAAGCGGATTCGGATTCAAGGGTTCGTGGTGTCTGATTACTTTGACAAACACTT 899
Query 920 GAAGTTCCTGGATTTTGTGCTTCCGTATATAAGAGAAGGGAAGATAACGTATGTTGAGGA 979
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 900 AAAGTTCCTGGATTTTGTGCTTCCGTATATAAGAGAAGGAAAGATAACTTATGTTGAGGA 959
Query 980 TGTAGTTGAAGGACTTGAGAACGGACCTTCAGCTTTGCTTGGACTATTCCATGGTAAGAA 1039
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 TATAGTTGAAGGACTTGAGAACGGACCTTCAGCTTTGCTTGGACTGTTCCATGGTAAGAA 1019
Query 1040 CGTCGGCAAACAACTCATAGC-GGTTGCTCGTGAATGA 1076
||||||||||||||||||| | |||||||| |||||||
Sbjct 1020 CGTCGGCAAACAACTCATA-CTGGTTGCTCCTGAATGA 1056
> Ahg941198 jgi|Araly1|941198|scaffold_601742.1
Length=1083
Score = 907 bits (491), Expect = 0.0
Identities = 850/1023 (83%), Gaps = 25/1023 (2%)
Strand=Plus/Plus
Query 44 GACGGTGGCCAATAAGCAGGTCATACTGCGAGATTACGTCACCGGTTTCCCCAAGGAATC 103
||||| | | || |||||||||||| || ||| ||||| | |||||||| ||||||||
Sbjct 28 GACGGCGACGAACAAGCAGGTCATATTGAAAGACTACGTGAATGGTTTCCCTAAGGAATC 87
Query 104 AGACCTC-ATCTTCACCGA-TTCCACCATCG-ATTTAAAGATTCCGGAGGGATCCAAGAC 160
|| || || |||| | | ||||| ||| | || ||| ||||||| || || || |
Sbjct 88 CGATTTCGAT-TTCA-CAACCACCACCGTCGAACTT-AAGGTTCCGGAAGGTTCTAACTC 144
Query 161 GGTTCTGGTGAAGAATCTCTACTTGTCTTGCGATCCTTACATGCGCATTCGCATGGGGAA 220
||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 145 GGTTCTGGTGAAGAATCTCTACTTGTCATGCGATCCTTACATGAGGATTCGCATGGGGAA 204
Query 221 GCCCGATCCCGGCACTGCTGCGCTCGCTCCA-CATTACATTCCTGGCGAGCCAATTTATG 279
|| ||||| ||||||||| || |||| | | ||||| ||| ||| ||||||| | |
Sbjct 205 ACCTGATCCTTCCACTGCTGCTCTTGCTCAAGC-TTACACTCCCGGCCAGCCAATCCAAG 263
Query 280 GGT-TTTCAGTGTCAAAAGTGATAGATTCTGGGCATCCAGATTACAAAAAGGGAGACTTA 338
||| | | |||||| | ||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 264 GGTATGT-AGTGTCCAGAGTGATAGAATCTGGACATCCAGATTACAAAAAAGGAGACTTA 322
Query 339 CTTTGGGGAT-TAGTTGGATGGGGGGAGTACAGTCTTATCACTCC-AGATTTTTC--ACA 394
|| ||||| | |||||| ||||| ||||||| | |||||||||| | | | | ||
Sbjct 323 CTCTGGGG-TATAGTTGCATGGGAGGAGTACTCTGTTATCACTCCAACACCTCACGTGCA 381
Query 395 TTACAAGATCCAACACACCGATGTTCCCTTATCCTACTACACTGGACTTCTCGGTATGCC 454
|| ||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 382 TTTCAAGATCCAGCATACCGATGTTCCATTATCTTACTACACTGGACTTCTCGGTATGCC 441
Query 455 CGGTATGACTGCCTATGCTGGATTTTATGAAATATGTTCTCCTAAGAAAGGAGAAACCGT 514
||||||||||||||||||||| ||||||||| | |||||||| ||||||||||| || ||
Sbjct 442 CGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGAAAGGAGAGACAGT 501
Query 515 AT-TCGTGTCAGCTGCGTCTGGTGCAGTTGGTCAGCTCGTGGGACAATTTGCAAAGAT-T 572
| | ||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| |
Sbjct 502 TTAT-GTGTCAGCTGCATCTGGTGCGGTTGGTCAGCTTGTGGGGCAATTTGCTAAGATGT 560
Query 573 ATGGGCTGCTATGTTGTTGGAAGTGCAGGCAGTAATGAAAAGGTTGATCTTCTCAAGAAC 632
|||||||||||||||||||||| || || || || |||||||||||||| ||||||| |
Sbjct 561 -TGGGCTGCTATGTTGTTGGAAGCGCCGGTAGCAAAGAAAAGGTTGATCTCCTCAAGACC 619
Query 633 AAATTCGGGTTTGATGATGCATTCAATTACAAAGCAGAGCCAGACCTTAATGCTGCCCTG 692
|| || ||||||||||||||||| || ||||| | ||| || ||||||| |||||||||
Sbjct 620 AAGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGAACCTGACCTTACTGCTGCCCTC 679
Query 693 AAGAGGTGTTTCCCGGAA-GGAATCGACATATACTTTGAGAATGTAGGAGGCAAAATGCT 751
|| ||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 680 AAAAGGTGTTTCCCT-AATGGCATTGACATATACTTTGAGAATGTAGGAGGCAAAATGCT 738
Query 752 AGACGCAGTGCTCCTAAACATGAAACTACACGGCCGTATCGCAGTATGTGGTATGATCTC 811
||||||||||||| |||||||||| | |||||| |||||||| || ||||| ||||||||
Sbjct 739 AGACGCAGTGCTCGTAAACATGAACCCACACGGGCGTATCGCTGTCTGTGGAATGATCTC 798
Query 812 ACAGTACAACCTTGAGGACCAAGAAGGTGTACACAACCTAGCAAACGTGATCTACAAGCG 871
||||||||| |||||| |||| |||||||||||||||||| | ||| | |||||||| ||
Sbjct 799 ACAGTACAATCTTGAGAACCAGGAAGGTGTACACAACCTATCCAACATAATCTACAAACG 858
Query 872 GATTCGGATTAAAGGGTTCGTGGTCTCTGATTACT-TCGACAAACACTTGAAGTTCCTGG 930
|| || ||| |||| || || || ||||||| || | |||||| ||| |||||| |||
Sbjct 859 AATCCGCATTCAAGGCTTTGTAGTTTCTGATTTCTAT-GACAAATACTCAAAGTTCTTGG 917
Query 931 ATTTTGTGCTTCCGTATATAAGAGAAGGGAAGATAACGTATGTTGAGGATGTAGTTGAAG 990
| |||||||||||| | || |||||||||||||||||||| || || ||||||| ||| |
Sbjct 918 AGTTTGTGCTTCCGCACATTAGAGAAGGGAAGATAACGTACGTGGAAGATGTAGCTGATG 977
Query 991 GACTTGAGAACGGACCTTCAGCTTT-GCTTGGACTATTCCATGGTAAGAACGTCGGCAAA 1049
| || ||||| | ||| |||| | | ||||||| |||||||||||||| || || |||
Sbjct 978 GGCTCGAGAAAGCTCCTGAAGCTCTCG-TTGGACTCTTCCATGGTAAGAATGTTGGGAAA 1036
Query 1050 CAA 1052
|||
Sbjct 1037 CAA 1039
> Ahg472786 jgi|Araly1|472786|fgenesh2_kg.1__2740__AT1G26320.1
Length=1177
Score = 876 bits (474), Expect = 0.0
Identities = 882/1076 (82%), Gaps = 39/1076 (4%)
Strand=Plus/Plus
Query 22 AAATGGC-AAC-CTCAGGCAATGCGACGGTGGCCAATAAGCAGGTCATACTGCGAGATTA 79
||||||| ||| | |||| | ||||||||| |||| |||||| ||||| | ||||| ||
Sbjct 2 AAATGGCTAACACAGAGGC-A-GCGACGGTGACCAACAAGCAGATCATATTCCGAGACTA 59
Query 80 CGTCACCGGTTTCCCCAAG-GAATCAGACCTCATCTTCACCGA-TTCCACCATCGATTTA 137
|| | || || |||||| ||||| || || | | | ||| | | ||||||||| ||
Sbjct 60 TGTGAGTGGATT-CCCAAGAGAATCTGATCTTAACCTAACC-ACAACTACCATCGATCTA 117
Query 138 AAGATTCCGGAGGGATCCAAGACGGTTCTGGTGAAGAATCTCTACTTGTCTTGCGATCCT 197
| | ||||||||||||||| | | || |||||||||||||| ||||||||||||||||||
Sbjct 118 AGGCTTCCGGAGGGATCCACGTCAGTGCTGGTGAAGAATCTTTACTTGTCTTGCGATCCT 177
Query 198 TACATGCGCATTCGCATGGGGAAGCCCGATCCC-GGCACTGCTGCGCTCGCTCCACATTA 256
|||||||||||| ||||||| |||||||||||| | || || | || | ||||| ||
Sbjct 178 TACATGCGCATTTGCATGGGAAAGCCCGATCCCTTG-TCTTCTTCCCTTGTTCCACCGTA 236
Query 257 CATTCCTGGCGAGCCAATTTA-TGGGTTTTCAGTGTCAAAAGTGATAGATTCTGGGCATC 315
|| |||||| ||||| | | |||| || |||||| |||||||||||||| |||||||
Sbjct 237 CAAGACTGGCGTGCCAA-TCATTGGGCTTGGAGTGTCTAAAGTGATAGATTCAGGGCATC 295
Query 316 CAGATTACAAAAAGGGAGACTTACTTTGGGGATTAGTTGGATGGGGGGAGTACAGTCTTA 375
|||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| |||
Sbjct 296 CAGATTACAAAAAGGGAGACTTACTTTGGGGACTAGTTGGATGGGAGGAGTATAGTGTTA 355
Query 376 TCACTCCAGATT--TT--TCACATTACAAGATCCAACACACCGATGTTCCC-TTATCCTA 430
| ||| | | | || ||||||| ||| ||||||||||||||||| ||| ||||| ||
Sbjct 356 TTACTTTA-ACTCATTACTCACATTTCAAAATCCAACACACCGATGT-CCCGTTATCTTA 413
Query 431 CTACACTGGACTTCTCGGTATGCCCGGTATGACTGCCTATGCTGGATTTTATGAAATATG 490
||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||
Sbjct 414 CTACACTGGACTTCTTGGTATGCCTGGTATGACTGCTTATGCTGGATTTTACGAAATTTG 473
Query 491 TTCTCCTAAGAAAGGAGAAACCGTATTCGTGTCAGCTGCGTCTGGTGCAGTTGGTCAGCT 550
||| ||||| |||||||| || || |||||||||||||| ||||| || |||||||||||
Sbjct 474 TTCACCTAAAAAAGGAGAGACTGTCTTCGTGTCAGCTGCATCTGGCGCGGTTGGTCAGCT 533
Query 551 CGTGGGACAATTTGCAAAGATT-ATGGGCTGCTATGTTGTTGGAAGTGCAGGCAGTAATG 609
||||||||||||||||||| || ||||| || ||||| ||||| ||||| |||||||| |
Sbjct 534 CGTGGGACAATTTGCAAAG-TTGATGGGTTGTTATGTCGTTGGTAGTGCCGGCAGTAAAG 592
Query 610 AAAAGGTTGATCTTCTCAAGAACAAA-TTCGGGTTTGATGATGCATTCAATTACAAAGCA 668
||||||||||||||||||||| | || || |||| ||||||||| ||||||||||| | |
Sbjct 593 AAAAGGTTGATCTTCTCAAGA-CTAAGTTTGGGTATGATGATGCTTTCAATTACAAGGAA 651
Query 669 GAGCCAG-ACCTTAATGCTGCCCTGAAG-AGGTGTTTCCCGGAAGGAATCGACATATACT 726
||| || || ||| ||||||||| ||| |||| ||| |||||||| ||||||||||| |
Sbjct 652 GAGA-AGGACTTTAGTGCTGCCCT-AAGGAGGTATTTTCCGGAAGGGATCGACATATATT 709
Query 727 TTGAGAATGTAGGAGGCAAAATGCTAGACGCAGTGCTCCTAAACATGAAACTACACGGCC 786
||||||| || |||||||||||| |||| || || ||| ||||||||| | || || |
Sbjct 710 TTGAGAACGTTGGAGGCAAAATGTTAGATGCCGTACTCATAAACATGAGGTTGCATGGTC 769
Query 787 GTATCGCAGTATGTGGTATGATCTCACAGTACAACCTT-GAGGA-CCAAGAAGGTGTACA 844
|| ||||||||||||| ||||||||||||||||| || ||||| ||| ||||| |||||
Sbjct 770 GTGTCGCAGTATGTGGAATGATCTCACAGTACAAT-TTAGAGGATCCA-GAAGGCGTACA 827
Query 845 CAACCTAGCAAACGTGATCTACAAGCGGATTCGGA-TTAAAGGGTTCGTGGTCTCTGATT 903
||||||| | | | | | |||||| |||| | | || ||||||| | ||| | |||||
Sbjct 828 CAACCTACCGACCATCCTTTACAAGAGGATACA-ACTTCAAGGGTTTGGGGTTTGTGATT 886
Query 904 ACTTCGACAAACACTTGAA-GTTCCTGGATTTTGTGCTTCCGTATATAAGAGAAGGGAAG 962
|| ||||||| | || || ||| |||||||||||||||| || || ||||||||||||
Sbjct 887 TCTACGACAAATA-TTCAAAGTTTTTGGATTTTGTGCTTCCTTACATTAGAGAAGGGAAG 945
Query 963 ATAACG-TATGTTGAGGATGTAGTTGAAGGACTT-GAGAACGGACCTTCAGCTTTGCTTG 1020
|||| | || |||||||| ||| |||||| || |||| || ||||||||| |||| |
Sbjct 946 ATAA-GATACGTTGAGGACATAGCGGAAGGA-TTCGAGAGTGGGCCTTCAGCTCTGCTAG 1003
Query 1021 GACTATTCCATGGTAAGAACGTCGGCAAACAACTCATAGCGGTTGCTCGTGAATGA 1076
|||| || | ||||| |||||||| ||||||||| | | |||||||||||| |||
Sbjct 1004 GACTCTTTGAAGGTAAAAACGTCGGGAAACAACTCTTTGTGGTTGCTCGTGAGTGA 1059
> Ahg941200 jgi|Araly1|941200|scaffold_601744.1
Length=1078
Score = 874 bits (473), Expect = 0.0
Identities = 848/1027 (83%), Gaps = 33/1027 (3%)
Strand=Plus/Plus
Query 44 GACGGTGGCCAATAAGCAGGTCATACTGCGAGATTACGTCACCGGTTTCCCCAAGGAAT- 102
||||| | | || |||||||||||| || ||| ||||| | |||||||| |||||||
Sbjct 23 GACGGCGACAAACAAGCAGGTCATATTGAAAGACTACGTGAGTGGTTTCCCTAAGGAATC 82
Query 103 CAGACCTC-ATCTTCACCGATTC--CACCATCG-ATTTAAAGATTCC-GGAGGGATCCAA 157
|| | || || |||| || | |||| ||| |||| ||| |||| |||||| || ||
Sbjct 83 CA-ATTTCGAT-TTCA-AGA-CCAACACCGTCGAATTT-AAGGTTCCGGGAGGG-TCTAA 136
Query 158 GACGGTTCTGGTGAAGAATCTCTACTTGTCTTGCGATCCTTACATGCGCATTCGCATGGG 217
| ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||
Sbjct 137 TTCAGTTCTGGTGAAGAATCTCTACCTGTCATGCGATCCTTACATGCGTATTCGCATGGG 196
Query 218 GAAGCCCGATCCCGGCACTGCTGCGCTCGCTCCA-CATTACATTCCTGGCGAGCCAAT-T 275
||| || |||||| ||||||||| || |||| | | |||| ||| ||| ||||||| |
Sbjct 197 GAAACCTGATCCCTCCACTGCTGCTCTTGCTCAAGC-TTACGCTCCCGGCCAGCCAATCT 255
Query 276 TATGGGTTTTCAGTGTCAAAAGTGATAGATTCTGGGCATCCAGATTACAA-AAAGGGAGA 334
| ||||| | |||||| | ||| || || ||||| ||||| |||||||| ||| || ||
Sbjct 256 T-TGGGTATGGAGTGTCTAGAGTTATTGAATCTGGACATCCTGATTACAAGAAA-GGTGA 313
Query 335 CTTACTTTGGGGATTAGTTGGATGGGGGGAGTACAGTCTTATCACTCC-A-GATTTTTCA 392
||||| |||||| |||||||||||| |||||| ||| |||| ||||| | || | ||
Sbjct 314 TTTACTCTGGGGAATAGTTGGATGGGAGGAGTATAGTGTTATTACTCCAATGA-CTCACA 372
Query 393 --CATTACAAGATCCAACACACCGATGTTCCCTTATCCTACTACACTGGACTTCTCGGTA 450
|||| |||||||||||| ||||||||||| ||||| |||||| |||||||||||||||
Sbjct 373 TGCATTTCAAGATCCAACATACCGATGTTCCATTATCTTACTACGCTGGACTTCTCGGTA 432
Query 451 TGCCCGGTATGACTGCCTATGCTGGATTTTATGAAATATGTTCTCCTAAGAAAGGAGAAA 510
||||||||||||||||||||||||| ||||||||| | ||||| || ||||||||||| |
Sbjct 433 TGCCCGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCCCCAAAGAAAGGAGAGA 492
Query 511 CCGTAT-TCGTGTCAGCTGCGTCTGGTGCAGTTGGTCAGCTCGTGGGACAATTTGCAAAG 569
| || | | ||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 493 CGGTTTAT-GTGTCAGCTGCATCTGGTGCAGTTGGTCAGCTTGTGGGACAATTTGCTAAG 551
Query 570 ATTATGGGCTGCTATGTTGTTGGAAGTGCAGGCAGTAATGAAAAGGTTGATCTTCTCAAG 629
|| |||||||| ||||||||||||||||| || | || ||||| |||||||| ||||||
Sbjct 552 ATGATGGGCTGTTATGTTGTTGGAAGTGCCGGTACCAAAGAAAAAGTTGATCTCCTCAAG 611
Query 630 AACAAATTCGGGTTTGATGATGCATTCAATTACAAAGCAGAGCCAGACCTTAATGCTGCC 689
| ||| || || |||||||||||||| || ||||| | ||| |||||||||| |||||||
Sbjct 612 ACCAAGTTTGGATTTGATGATGCATTTAACTACAAGGAAGAACCAGACCTTACTGCTGCC 671
Query 690 CTGAAGAGGTGTTT-CCCGGAAGGAATCGACATATACTTTGAGAATGTAGGAGGCAAAAT 748
|| || |||||||| ||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 672 CTCAAAAGGTGTTTTCCCA-AAGGCATCGACATATACTTTGAGAACGTAGGAGGCAAAAT 730
Query 749 GCTAGACGCAGTGCTCCTAAACATGAAACTACACGGCCGTATCGCAGTATGTGGTATGAT 808
|||||||||||||||| |||||||||| | || ||| ||||| || || ||||| |||||
Sbjct 731 GCTAGACGCAGTGCTCTTAAACATGAACCCACTCGGGCGTATAGCTGTCTGTGGAATGAT 790
Query 809 CTCACAGTACAACCTTGAGGACCAAGAAGGTGTACACAACCTAGCAAACGTGATCTACAA 868
|||||||||||| ||||| ||||||||||||||||||||||| | ||| | ||||||||
Sbjct 791 CTCACAGTACAATCTTGAAAACCAAGAAGGTGTACACAACCTATCCAACATAATCTACAA 850
Query 869 GCGGATTCGGATTAAAGGGTTCGTGGTCTCT-GATTACTTCGACAAACACTTGAAGTTCC 927
|| || || ||| ||||||| || ||| || |||| || ||||||| ||| ||||||
Sbjct 851 ACGAATCCGCATTCAAGGGTTTGTAGTC-CTTGATTTCTACGACAAATACTCAAAGTTCT 909
Query 928 TGGATTTTGTGCTTCCGTATAT-AAGAGAAGGGAAGATAACGTATGTTGAGGATGTAGTT 986
|||| ||||||||||||| || || |||||||||||| ||||| || || ||||| | |
Sbjct 910 TGGAGTTTGTGCTTCCGTGCATCAA-AGAAGGGAAGATCACGTACGTGGAAGATGTGGCT 968
Query 987 GAAGGACTTGAGAACGGACCTTCAGCT-TTGCTTGGACTATTCCATGGTAAGAACGTCGG 1045
|| || |||||||| | ||| |||| ||| | ||||| ||||||||||||||||| ||
Sbjct 969 GATGGGCTTGAGAAAGCTCCTGAAGCTCTTG-TGGGACTCTTCCATGGTAAGAACGTTGG 1027
Query 1046 CAAACAA 1052
||||||
Sbjct 1028 GAAACAA 1034
> Ahg893609 jgi|Araly1|893609|Al_scaffold_0006_1605
Length=1041
Score = 701 bits (379), Expect = 0.0
Identities = 821/1029 (80%), Gaps = 51/1029 (5%)
Strand=Plus/Plus
Query 53 CAATAAGCAGGTCATACTGCGAGATTACGTCACCGGTTTCCCCAAGGAATCAGACCTCAT 112
||| ||||| ||| || | || |||||||| |||||||| |||| ||||| ||||| |
Sbjct 15 CAACAAGCAAGTCGTATTACGTGATTACGTAACCGGTTTTGCCAACGAATCCGACCTTGT 74
Query 113 CTTCACCGATTCCACCATCGAT-TTAAAGATTCCGGAGGGATCCAAGACGG-TTCTGGTG 170
||||| ||||| ||||| || | | | ||| ||||||| | ||||| | |||||
Sbjct 75 AATCACCTCCACCACCGTCGATCTT-AGGGTGCCGAAGGGATCTATGACGGCGT-TGGTG 132
Query 171 AAGAATCTCTACTTGTCTTGCGATCCTTACATGCGCATTCGCATGGGGAAGCCCGATCCC 230
||||||||||||||||||||||||||||||||||| | ||| ||| | || || |||||
Sbjct 133 AAGAATCTCTACTTGTCTTGCGATCCTTACATGCGGAATCGTATGAGAAAACCTGATCCT 192
Query 231 --G-GCACTGCTGC-GCTC-GCTCCACATTACATTCCTGGCGAGCCAATTT-ATGGGTTT 284
| || ||||| | |||| | ||| || || ||| ||| |||| || | | ||||||
Sbjct 193 TTGAGCCCTGCTACTGCTCAG-TCC---TT-CACTCCCGGCAAGCCTATCTCA-GGGTTT 246
Query 285 TCAGTGTCAAAAGTGATAGATTCTGGGCA-TCCAGATTACAAA-AAGGGAGACTTACTTT 342
|||||| ||||||||||||||||| || || ||||||| || |||| ||||||||||
Sbjct 247 GGAGTGTCTAAAGTGATAGATTCTGGACACTC-AGATTACGAAGAAGGT-GACTTACTTT 304
Query 343 GGGGATTAGTTGGATGGGGGGAGTACAGTCTTATCACTCCAGATT--T--T-T-CACATT 396
||||| ||| ||||||| ||||||||| |||| || ||| ||| | | | ||| ||
Sbjct 305 GGGGAGCAGTAGGATGGGAAGAGTACAGTGTTATTACACCA-ATTCCTAATCTTCAC-TT 362
Query 397 ACAAGATCCAACACACCGATGTTCCCTTATCCTACTACACTGGACTTCTCGGTATGCCCG 456
||| ||||| || |||||| |||||||||| ||||||||||||||||| |||||||| |
Sbjct 363 -CAAAATCCATCATACCGATTTTCCCTTATCTTACTACACTGGACTTCTTGGTATGCCTG 421
Query 457 GTATGACTGCCTATGCTGGATTTTATGAAATATGTTCTCCTAAGAAAGGAGAAACCGTAT 516
||||||| || |||| ||| ||||| || || |||||||| ||||||||||| ||||| |
Sbjct 422 GTATGACCGCATATGTTGGGTTTTACGAGATCTGTTCTCCAAAGAAAGGAGATACCGTGT 481
Query 517 TCGTGTCAGCTGCGTCTGGTGCAGTTGGTCAGCTCGTGGGACAATTTGCAAAGATTATGG 576
| ||||||||||| ||||| || ||||||||||| || ||||||||||| ||||| ||||
Sbjct 482 TTGTGTCAGCTGCCTCTGGCGCGGTTGGTCAGCTTGTAGGACAATTTGCTAAGATGATGG 541
Query 577 GCTGCTATGTTGTTGGAAGTGCAGGCAGTAATGAAAAGGTTGATCTTCTCAAGAACAAAT 636
| || ||||||||||||||||| || ||||| |||||||||||||| ||||||||||| |
Sbjct 542 GTTGTTATGTTGTTGGAAGTGCTGGAAGTAAAGAAAAGGTTGATCTCCTCAAGAACAAGT 601
Query 637 TCGGGTTTGATGATGCATTCAATTACAAAGCAGAGC-CAGACCTTAATGCTGCCCTGAAG 695
| || || |||||||||||||| ||||||| ||| | || | |||| ||||||||| ||
Sbjct 602 TTGGATTCGATGATGCATTCAACTACAAAGAAGAACACA-ATCTTATTGCTGCCCTAAAA 660
Query 696 AGGTGTTTCCCGGAAGGAATCGACATATACTTTGAGAATGTAGGAGGCAAAATGCTAGAC 755
||||||||||| ||||| || ||||||||||||||||| || |||||||| ||||| ||
Sbjct 661 AGGTGTTTCCCTGAAGGCATTGACATATACTTTGAGAACGTGGGAGGCAAGATGCTGGAT 720
Query 756 GCAGTGCTCCTAAACATGAAACTACACGGCCGTATCGCAGTATGTGGTATGATCTCACAG 815
|||||| || ||||||||| || ||||||||||||||| | |||||| ||||||||||||
Sbjct 721 GCAGTGATCTTAAACATGAGACCACACGGCCGTATCGCGGCATGTGGGATGATCTCACAG 780
Query 816 TACAACCTTGAGGA--CCAAGAAGGTGTACACAA-C-CTAGCAAACGTGATCTACAAGCG 871
||||| || || || || ||||| || || | || || | | | |||||| ||
Sbjct 781 TACAATCT-GAAGAATCCG-GAAGGCATATACGGGCTCTCGCTCAT-T-ACCTACAAACG 836
Query 872 GATTCGGATTAAAGGGTT---CGTGGTCTCTGATTACTTCGACAAACACTT-GAAGTTCC 927
|| || || ||||||| | || | || ||||||||||||||| ||| ||| |||
Sbjct 837 AATCCGTATCGAAGGGTTTAAC-TGTT-TC-GATTACTTCGACAAATACTCAGAA-TTCT 892
Query 928 TGGATTTTGTGCTTCCGTATATAAGAGAAGGGAAGATAACGTATGTTGAGGATGTAGTTG 987
|||| |||||| ||||||||||||||||||| |||||||||||||| || ||||| | ||
Sbjct 893 TGGAGTTTGTGGTTCCGTATATAAGAGAAGGTAAGATAACGTATGTGGAAGATGTTGCTG 952
Query 988 AAGG-ACTTGAGAACGGACCTTCAGCTTT-GCTTGGACTATTCCATGGTAAGAACGTCGG 1045
| || | | |||| | ||| | ||| | | ||||||| || || ||||| ||||||||
Sbjct 953 ATGGGA-TCGAGAGTGCTCCTGCTGCTCTCG-TTGGACTCTTTCACGGTAAAAACGTCGG 1010
Query 1046 CAAACAACT 1054
||||||||
Sbjct 1011 GAAACAACT 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40067185767
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5