BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03100.1
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927816 jgi|Araly1|927816|scaffold_300273.1 896 0.0
Ahg932173 jgi|Araly1|932173|scaffold_400161.1 257 7e-68
> Ahg927816 jgi|Araly1|927816|scaffold_300273.1
Length=530
Score = 896 bits (485), Expect = 0.0
Identities = 514/528 (97%), Gaps = 2/528 (0%)
Strand=Plus/Plus
Query 46 gagagagagagagCGATAGCGGAAGACGATGGCTTTGACGGTGGCGAAGAGTGCGTTGGA 105
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2 GAGAGAGAGAGAGAGATAGCGGAGGACGATGGCTTTGACGGTGGCGAAGAGTGCGTTGGA 61
Query 106 GGCGATTAGAGAGAAAGGTCTCGGCGGTTTCATGAGGATGATCCGAGAAGAAGGC-TTCA 164
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 62 GGCCATTAGAGAGAAAGGTCTCGGCGGTTTCATGAGGATGATCCGAGAAGAAGGCTTTC- 120
Query 165 TGAGATGCCTACCAGATGGGAACCTCTTGCAAACTAAAATACATAACATAGGAGCGACAC 224
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 121 TGAGATGCCTACCAGATGGGAACCTCTTGCAAACTAAAATACACAACATAGGAGCAACAC 180
Query 225 TTGTTGGTGTTGACAAGTTCGGTAACAAATACTACCAGAAGCTAGGCGATACTCAATACG 284
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TTGTTGGTGTTGACAAGTTCGGTAACAAATACTACCAGAAGCTGGGCGATACTCAATACG 240
Query 285 GTAGGCACAGATGGGTAGAGTATGCTTCAAAGGATCGTTACAACGCATCTCAAGTACCAG 344
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 241 GTAGGCACAGATGGGTGGAGTATGCTTCAAAGGATCGTTACAATGCATCTCAAGTGCCAG 300
Query 345 CTGAATGGCACGGGTGGCTTCATTTCATCACTGATCACACTGGCGATGAGCTCTTGAGTT 404
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 CTGAATGGCACGGGTGGCTTCATTTCATCACTGATCACACTGGAGATGAGCTCTTGAGTT 360
Query 405 TGAAACCAAAAAGGTATGGGCTTGAGCATAAAGAGAACTTCTCTGGAGAAGGTGATGCAT 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGAAACCAAAAAGGTATGGGCTTGAGCATAAAGAGAACTTCTCTGGAGAAGGTGATGCAT 420
Query 465 ACATCTACCATTCGAAGGGACATACCTTGAACCCGGGACAAAAGAACTGGACTCGGTACC 524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 ACATCTACCATTCGAAGGGACATACCTTGAACCCGGGACAAAAGAACTGGACTCGGTATC 480
Query 525 AATCATGGGTACCCACCAAGACTCAGTAAGAAGATGATATTTTGGTTT 572
|||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 AATCATGGGTACCCACCAAGACTCAGTAAGGAGATGATATTTTGGTTT 528
> Ahg932173 jgi|Araly1|932173|scaffold_400161.1
Length=259
Score = 257 bits (139), Expect = 7e-68
Identities = 155/162 (96%), Gaps = 3/162 (2%)
Strand=Plus/Minus
Query 2 TCATGTCCCTTGTTATTTCGACAACGAAATCAAATCCCGATTCCgagagagagagagCGA 61
||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 181 TCATGTCCCTTGTTATTTCGATACCGAAATCGAATCCCGATTCCGAGAGAGAGAGAGC-- 124
Query 62 TAGCGGAAGACGATGGCTTTGACGGTGGCGAAGAGTGCGTTGGAGGCGATTAGAGAGAAA 121
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 TAGCGGAAG-CGATGGCTTTGACGGTGGCGTAGAGTGCGTTGGAGGCGATTAGAGAGAAA 65
Query 122 GGTCTCGGCGGTTTCATGAGGATGATCCGAGAAGAAGGCTTC 163
||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GGTCTCGGCGGTTTCATGAGGATGATCCGAGAAGAAGGCTTC 23
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27105393987
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5