BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03110.1
Length=3475
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927817 jgi|Araly1|927817|scaffold_300274.1 5529 0.0
Ahg941202 jgi|Araly1|941202|scaffold_601746.1 3254 0.0
> Ahg927817 jgi|Araly1|927817|scaffold_300274.1
Length=3276
Score = 5529 bits (2994), Expect = 0.0
Identities = 3175/3264 (97%), Gaps = 6/3264 (0%)
Strand=Plus/Plus
Query 9 GAATTTGCGCATCCTCTCCGCCATGGCTGCCGAGAAGTTAAGAGACTTGAGTCAGCCGAT 68
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GAATTTGCGAATCTTCTCCGCCATGGCTGCCGAGAAGTTAAGAGACTTGAGTCAGCCGAT 62
Query 69 TGACGTCGTTTTACTCGATGCCACTGTTGAGGCCTTTTACTCTACCGGATCTAAGGAAGA 128
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 63 TGACGTCGTTTTACTCGATGCCACTGTTGAGGCCTTTTACGCTACCGGATCTAAGGAAGA 122
Query 129 AAGAGCTTCTGCGGATAATATCTTGCGGGATTTGAAAGCTAATCCTGATACTTGGCTTCA 188
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 123 AAGAGCTTCTGCGGATACTATCTTGCGGGATTTGAAAGCTAATCCGGATACTTGGCTTCA 182
Query 189 AGTTGTTCACATTCTACAGAACACCAGTAGTACGCATACCAAATTTTTTGCCCTTCAGGT 248
||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||
Sbjct 183 AGTGGTTCACATTCTACAGAACACCAGTAGTACACATACAAAATATTTTGCCCTTCAGGT 242
Query 249 GCTGGAAGGTGTTATAAAATATAGGTGGAATGCATTACCCGTTGAACAACGTGATGGAAT 308
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GCTAGAAGGTGTTATAAAGTATAGGTGGAATGCATTACCCGTTGAACAACGTGATGGAAT 302
Query 309 GAAAAATTACATCTCTGATGTCATTGTGCAGCTGTCAAGGGATGAAGCATCTTTCAGAAC 368
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 303 GAAAAATTACATCTCTGATGTCATTGTGCAGCTCTCAAGGGATGAAGCATCTTTCAGAAC 362
Query 369 GGAAAGGCTTTATGTCAACAAGTTAAATATCATCCTGGTTCAGATCGTGAAACAGGAGTG 428
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 363 GGAAAGGCTTTATGTCAACAAGTTAAATGTCATCCTGGTTCAGATCGTGAAACATGAGTG 422
Query 429 GCCGGCAAAGTGGAAAAGCTTTATTCCTGATTTAGTTATAGCTGCTAAGACTAGTGAAAC 488
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 423 GCCGGCAAAGTGGAAAAGCTTTATTCCTGACCTAGTTATAGCTGCAAAGACTAGTGAAAC 482
Query 489 TATCTGTGAGAATTGCATGGCTATTTTGAAACTCCTAAGTGAAGAGGTCTTTGATTTCTC 548
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 483 TATCTGTGAGAATTGCATGGCCATTTTGAAACTCCTAAGTGAAGAGGTCTTTGATTTCTC 542
Query 549 AAAAGGAGAGATGACTCAGCAAAAGATAAAAGAACTGAAACAGTCTCTAAACAGCGAGTT 608
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AAGAGGAGAGATGACTCAGCAAAAGATAAAAGAACTGAAACAGTCTCTAAACAGCGAGTT 602
Query 609 TCAACTCATTCACGAGTTATGCCTATATGTCCTCTCAGCTTCCCAAAGACAAGAGCTTAT 668
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 603 TCAACTCATCCACGAGTTATGCCTATATGTCCTCTCAGCTTCCCAAAGACAAGAACTTAT 662
Query 669 ACGTGCTACACTCTCTGCATTGCATGCCTATCTTTCTTGGATTCCGTTGGGATACATATT 728
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 ACGTGCAACACTCTCTGCATTGCATGCCTATCTTTCTTGGATTCCGTTGGGATACATATT 722
Query 729 TGAGTCCCCTTTGCTGGAGATCCTACTTAAATTCTTCCCTGTTCCAGCATATAGGAATCT 788
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 723 TGAGTCCCCTTTGCTGGAGACCCTACTTAAATTCTTCCCTGTTCCAGCATATAGGAATCT 782
Query 789 CACACTTCAATGTTTGTCAGAGGTTGCATCTCTTAATTTTGGGGACTTCTACGATATGCA 848
||||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 783 CACACTTCAATGTCTGTCAGAGGTTGCATCTCTCAATTTTGGGGACTTCTACAATGTGCA 842
Query 849 ATATGTCAAGATGTACAGCATTTTCATGAATCAGTTGCAGGCAATTCTCCCTTTAAATTT 908
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 843 ATATGTCAAGATGTACAGCATTTTCATGAATCAGTTGCAGGCAATTCTCCCTATAAATTT 902
Query 909 AAATATCCCTGAGGCATATTCAACTGGAAGTAGTGAAGAACAGGCTTTTATCCAGAACTT 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 AAATATCCCTGAGGCATATTCAACTGGAAGTAGTGAAGAACAGGCTTTTATCCAGAACTT 962
Query 969 GGCACTGTTTTTCACTTCGTTTTTCAAGTTACATATAAAAATCCTAGAATCTGCACCCGA 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GGCACTGTTTTTCACTTCGTTTTTCAAGTTACATATAAAAATCCTAGAATCTGCACCCGA 1022
Query 1029 AAATATTTCTCTATTACTTGCGGGTCTGGGATATCTCATTAGCATATCGTATGTTGATGA 1088
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1023 GAATATTTCTCTATTACTTGCGGGTCTGGGATATCTCATTAGCATATCATATGTTGATGA 1082
Query 1089 CACTGAAGTATTCAAGGTTTGTTTGGACTATTGGAATTCATTAGTGTTGGAGTTGTTTGG 1148
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1083 CACTGAAGTATTCAAGGTTTGTTTGGACTATTGGAATTCATTAGTTTTGGAGTTGTTTGG 1142
Query 1149 GACGCGACATCATGCGT-GTCACCCTGCACTAACTCCAAGTCTGTTTGGATTGCAAATGG 1207
| ||| ||||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1143 GGCGCAACATCATGC-TGGTCACCCTGCACTAACTCCAACTCTGTTTGGATTGCAAATGT 1201
Query 1208 CTTTCCTTCCTAGT-ACAGTTGATGGTGTTAAATCTGAAGTCACTGAGCGGCAAAAACTT 1266
|||||||||||| | |||||||||||||||||| ||||||| || |||||||| |||||
Sbjct 1202 CTTTCCTTCCTA-TCACAGTTGATGGTGTTAAACCTGAAGTGACGGAGCGGCATCAACTT 1260
Query 1267 TATTCAGATCCAATGTCAAAATTAAGGGGACTCATGATTAGTCGCACGGCTAAGCCTGAA 1326
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1261 TATTCAGATCCAATGTCAAAATTAAGGGGACTCATGATTAGTCGCATGGCTAAGCCTGAA 1320
Query 1327 GAAGTGTTAATTGTTGAGGACGAAAATGGGAACATTGTTCGTGAAACTATGAAGGATAAT 1386
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1321 GAAGTGTTAATTGTTGAGGACGAAAATGGGAACATTGTCCGTGAAACTATGAAGGATAAT 1380
Query 1387 GATGTTCTTGTCCAGTATAAGATAATGCGGGAGACATTAATCTACCTCTCACACCTTGAT 1446
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1381 GATGTTCTTGTCCAGTATAAGATAATGCGAGAGACATTAATCTACCTCTCACATCTTGAT 1440
Query 1447 CATGAAGATACCGAAAAACAGATGTTGAGTAAGCTAAGCAAACAGTTGAGCGGGGAGGAA 1506
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1441 CATGAAGATACCGAAAAACAGATGTTGAGTAAGCTAAGCAAACAGTTGAGTGGAGAGGAA 1500
Query 1507 TGGGCATGGAACAATCTAAACACTTTATGCTGGGCTATTGGGTCTATTTCTGGGTCCATG 1566
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1501 TGGGCATGGAACAATCTGAACACTTTATGCTGGGCGATTGGGTCTATTTCTGGGTCCATG 1560
Query 1567 GTAGTAGAACAGGAAAACAGATTTCTCGTGATGGTTATCCGTGATTTGTTAAGTTTATGT 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GTAGTAGAACAGGAAAACAGATTTCTCGTGATGGTTATCCGTGATTTGTTAAGTTTATGT 1620
Query 1627 GAAGTCGTCAAGGGAAAAGACAATAAAGCTGTTATTGCGAGCAACATCATGTACGTTGTT 1686
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1621 GAAGTCGTCAAGGGAAAAGACAATAAAGCTGTTATTGCGAGCAACATCATGTATGTTGTT 1680
Query 1687 GGACAATATTCAAGATTCTTAAGAGCCCATTGGAAGTTTTTGAAGACAGTTGTCCATAAG 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GGACAATATTCAAGATTCTTAAGAGCCCATTGGAAGTTTTTGAAGACAGTTGTCCATAAG 1740
Query 1747 CTGTTTGAATTTATGCATGAGACGCATCCTGGTGTTCAGGACATGGCTTGCGACACATTC 1806
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1741 TTGTTTGAGTTTATGCATGAGACGCATCCTGGTGTTCAGGACATGGCTTGTGACACATTC 1800
Query 1807 TTAAAAATTGTTCAGAAGTGTAAGCGAAAATTTGTTATTGTTCAGGTTGGAGAAAGTGAG 1866
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1801 TTAAAAATTGTTCAGAAGTGTAAGCGAAAATTCGTTATTGTTCAGGTTGGAGAAAGTGAG 1860
Query 1867 CCATTTGTGTCTGAACTTCTATCAGGCCTTGCTACAATCGTCGGAGATCTTCAACCTCAT 1926
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 CCATTTGTATCTGAACTTCTATCAGGCCTTGCTACAATCGTCGGAGATCTTCAACCTCAT 1920
Query 1927 CAGATTCATACATTTTATGAATCTGTTGGTAGTATGATCCAGGCAGAATCAGATCCTCAG 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 CAGATTCATACATTTTATGAATCTGTTGGTAGTATGATCCAGGCAGAATCAGATCCTCAG 1980
Query 1987 AAGAGGGGGGAATACCTCCAGAGGTTGATGGCTCTCCCGAATCAGAAATGGGCAGAAATT 2046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 AAGAGGGGGGAATACCTCCAGAGGTTGATGGCTCTCCCGAATCAGAAATGGGCAGAAATT 2040
Query 2047 ATAGGACAAGCACGTCAAAGTGCAGATATCCTCAAGGAACCAGATGTGATACGTACTGTG 2106
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2041 ATAGGACAAGCACGTCAAAGTGCAGATATCCTCAAGGACCCAGATGTGATACGTACTGTG 2100
Query 2107 CTTAATATCCTCCAGACAAATACGCGCGTTGCAACTTCACTAGGAACATTCTTCCTGTCT 2166
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 2101 CTTAATATTCTCCAGACAAATACGCGCGTTGCAACTTCATTAGGAACATTCTTCCTCTCT 2160
Query 2167 CAAATTTCGTTGATCTTCTTGGATATGCTGAATGTTTACAGAATGTATAGTGAACTCGTT 2226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 CAAATTTCGTTGATCTTCTTGGATATGCTGAATGTTTACAGAATGTATAGTGAACTCGTT 2220
Query 2227 TCAAGCAGCATTGCTAATGGTGGCCCATACGCTTCGAGAACATCTCTTGTTAAACTTTTA 2286
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 TCAAGCAGCATCGCTAATGGTGGCCCATACGCTTCGAGAACATCTCTTGTTAAACTTTTA 2280
Query 2287 AGGTCTGTTAAGAGGGAAATTCTTAAGCTGATAGAGACGTTTTTAGATAAAGCTGAAAAC 2346
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2281 AGGTCTGTTAAGAGGGAAATCCTTAAGCTGATAGAGACGTTTTTAGACAAAGCTGAAAAC 2340
Query 2347 CAGCCACACATTGGAAAACAGTTTGTTCCACCAATGATGGATCAAGTACTTGGCGACTAT 2406
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2341 CAGCCACACATTGGAAAACAGTTTGTCCCACCAATGATGGATCAAGTACTTGGCGACTAT 2400
Query 2407 GCAAGAAATGTTCCTGATGCAAGAGAATCAGAAGTCTTGTCACTCTTTGCGACAATAATC 2466
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2401 GCAAGAAATGTTCCTGATGCAAGAGAATCAGAAGTCTTATCACTCTTTGCGACAATAATA 2460
Query 2467 AACAAATACAAGGTTGTAATGCGAGATGAAGTTCCCCTCATATTTGAAGCTGTTTTCCAG 2526
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 AACAAGTACAAGGTTGTAATGCGAGATGAAGTTCCCCTCATATTTGAAGCTGTTTTCCAG 2520
Query 2527 TGCACATTGGAGATGATTACTAAGAATTTTGAAGATTACCCAGAGCACCGTCTCAAGTTT 2586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2521 TGCACATTGGAGATGATTACTAAGAATTTTGAAGATTACCCAGAGCACCGTCTCAAGTTT 2580
Query 2587 TTCTCGTTACTTCGTGCTATTGCTACATTTTGTTTCCGTGCGTTGATACAGTTGTCAAGT 2646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2581 TTCTCGTTACTTCGTGCTATTGCTACATTTTGTTTCCGTGCGTTGATACAGTTGTCAAGT 2640
Query 2647 GAGCAACTGAAGCTAGTGATGGATTCAGTTATCTGGGCATTTAGGCATACTGAAAGAAAT 2706
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2641 GAGCAACTGAAGCTAGTGATGGATTCAGTTATCTGGGCATTTAGGCATACCGAAAGAAAT 2700
Query 2707 ATCGCTGAAACTGGGCTCAATCTCTTGCTCGAGATGCTGAAAAACTTTCAGAAATCTGAC 2766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2701 ATCGCTGAAACTGGGCTCAATCTCTTGCTCGAGATGCTGAAAAACTTTCAGAAATCTGAC 2760
Query 2767 TTTTGTAACAAATTCTACCAAACATACTTTCTGCAAATTGAGCAAGAAGTATTTGCTGTC 2826
|| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 2761 TTCTGTAACAAATTCTACCAAGCATACTTTCTACAAATTGAGCAAGAAGTATTTGCTGTT 2820
Query 2827 TTGACCGATACCTTCCACAAGCCTGGGTTCAAGTTGCATGTGTTGGTGTTGCAGCACTTA 2886
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 2821 TTGACCGATACCTTCCATAAGCCTGGGTTCAAGTTGCATGTGTTGGTGCTGCAGCACTTA 2880
Query 2887 TTTAGCCTGGTTGAGAGCGGATCATTGGCAGAACCATTGTGGGATGCTGCAACGGTA-CC 2945
||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||| ||
Sbjct 2881 TTTAGCCTGGTTGAGAGTGGATCATTGACAGAACCATTGTGGGATGATGCAACGGTAACC 2940
Query 2946 GCATCCTTATTCAAATAATGTCGCCTTTGTGCTTGAGTACACCACCAAGCTTCTAAGCTC 3005
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2941 -CATCCTTATCCAAATAATGTCGCCTTTGTACTTGAGTACACCACCAAGCTTCTAAGCTC 2999
Query 3006 ATCATTCCCCAACATGACTACAACAGAGGTGACACAGTTTGTGAATGGACTTTACGAGTC 3065
||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 3000 ATCATTCCCTAACATGACTACAACAGAGGTGACACAATTTGTGAATCGACTTTACGAGTC 3059
Query 3066 GAGAAACGATGTTGGCAGATTTAAGGATAACATACGCGACTTCCTTATACAGTCCAAGGA 3125
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3060 GAGAAACGATGTTGGCAGATTTAAGGATAACATACGCGACTTCCTTGTACAGTCCAAGGA 3119
Query 3126 ATTTTCTGCTCAGGATAACAAAGATTTATATGCTGAGGAAGCTGCTGCCCAAATGgagag 3185
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3120 ATTTTCTGCTCAGGATAACAAAGATTTATATGCTGAGGAAGCTGCTGCACAAATGGAGAG 3179
Query 3186 agagagaCAAAGAATGCTTTCGATTCCTGGACTTATAGCTCCCAGCGAAATTCAAGACGA 3245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3180 AGAGAGACAAAGAATGCTTTCGATTCCTGGACTTATAGCTCCCAGCGAAATTCAAGACGA 3239
Query 3246 CATGGCCGATTCTTAAGTCTTGTT 3269
|||||| |||||||||||||||||
Sbjct 3240 CATGGCTGATTCTTAAGTCTTGTT 3263
> Ahg941202 jgi|Araly1|941202|scaffold_601746.1
Length=3278
Score = 3254 bits (1762), Expect = 0.0
Identities = 2775/3264 (85%), Gaps = 70/3264 (2%)
Strand=Plus/Plus
Query 22 CTCTCCGCCATGGCTGCCGAGAAGTTAAGAGACTTGAGTCAGCCGATTGACGTCGTTTTA 81
||||| |||||||| || ||||||||||| |||||||| |||||||||||||||| | |
Sbjct 18 CTCTCTGCCATGGCGGCTGAGAAGTTAAGGGACTTGAGCCAGCCGATTGACGTCGGTGTG 77
Query 82 CTCGATGCCACTGTTGAGGCCTT-TTACTCTACCGGATCTAAGGAAGAAAGAGCTTCTGC 140
|||||||||||||||| |||||| || | |||||||||||| ||||| |||||| ||||
Sbjct 78 CTCGATGCCACTGTTGCGGCCTTCTTTGT-TACCGGATCTAAAGAAGAGAGAGCTGCTGC 136
Query 141 GGATAATATCTTGCGGGATTTGAAAGCTAATCCTGATACT-TGGCTTCAAGTTGTTCACA 199
||| | || |||||||||||| | |||||||| |||| | |||||||||||||| ||||
Sbjct 137 GGACCAGATTTTGCGGGATTTGCAGGCTAATCCAGATA-TGTGGCTTCAAGTTGTCCACA 195
Query 200 TTCTACAGAACAC-CAGTAGTACGCATACCAAATTTTTTGCCCTTCAGGTGCTGGAAGGT 258
||||||| ||||| || || | | ||||||| || ||||| |||||||| || ||||||
Sbjct 196 TTCTACAAAACACAAAG-AGCATGGATACCAAGTTCTTTGCTCTTCAGGTTCTAGAAGGT 254
Query 259 GTTATAAAATATAGGTGGAATGCATTACCCGTTGAACAACGTGATGGAATGAAAAATTAC 318
|||||||| ||||| ||||||||| | || ||||||||||| ||||||||||||||||||
Sbjct 255 GTTATAAAGTATAGATGGAATGCACTGCCTGTTGAACAACGAGATGGAATGAAAAATTAC 314
Query 319 ATCTCTGATGTCATTGTGCAGCTGTCAAGGGATGAAGCATCTTTCAGAACGGAAAGGCTT 378
||||| || |||||||| ||||| || || ||||||||||||||||| | ||||||||
Sbjct 315 ATCTCAGAGGTCATTGTACAGCTCTCGAGTAATGAAGCATCTTTCAGATCAGAAAGGCTC 374
Query 379 TATGTCAACAAGTTAAATATCATCCTGGTTCAGATCGTGAAACAGGAGTGGCCGGCAAAG 438
|||||||||||| ||||| |||| |||| ||||| |||||||| || ||||||||||||
Sbjct 375 TATGTCAACAAGCTAAATGTCATTTTGGTCCAGATAGTGAAACATGATTGGCCGGCAAAG 434
Query 439 TGGAAAAGCTTTATTCCTGATTTAGTTATAGCTGCTAAGACTAGTGAAACTATCTGTGAG 498
|||| |||||| ||||||||| ||||| |||||||| ||||| ||||||||||| ||
Sbjct 435 TGGACAAGCTTCATTCCTGATCTAGTTGCGGCTGCTAAAACTAGCGAAACTATCTGCGAA 494
Query 499 AATTGCATGGCTATTTTGAAACTCCTAAGTGAAGAGGTCTTTGATTTCTCAAAAGGAGAG 558
||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct 495 AATTGCATGGCCATTTTGAAACTCCTAAGCGAAGAGGTTTTTGATTTCTCAAGAGGAGAA 554
Query 559 ATGACTCAGCAAAAGATAAAAGAACTGAAACAGTCTCTAAACAGCGAGTTTCAACTCATT 618
||||||| ||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 555 ATGACTCTGCAGAAGATTAAAGAGCTGAAACAATCTCTAAACAGCGAGTTTAAACTCATT 614
Query 619 CACGAGTTATGCCTATATGTCCTCTCAGCTTCCCAAAGACAAGAGCTTATACGTGCTACA 678
|| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct 615 CATGAGTTATGCCTATATGTCCTCTCAGCTTCTCAAAGACAGGATCTTATACGTGCAACA 674
Query 679 CTCTCTGCATTGCATGCCTATCTTTCTTGGATTCCGTTGGGATACATATTTGAGTCCCCT 738
|| ||||| ||||||||||||||||| |||||||| ||||| || || |||||||| |||
Sbjct 675 CTGTCTGCGTTGCATGCCTATCTTTCCTGGATTCCATTGGGTTATATTTTTGAGTCTCCT 734
Query 739 TTGCTGGAGATCCTACTTAAATTCTTCCCTGTTCCAGCATATAGGAATCTCACACTTCAA 798
||||| |||| ||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 735 TTGCTTGAGACCCTCCTTAAATTCTTCCCTGTGCCAGCATATAGGAACCTCACTCTTCAA 794
Query 799 TGTTTGTCAGAGGTTGCATCTCTTAATTTTGGGGACTTCTACGATATGCAATATGTCAAG 858
||| || | ||||||||| |||||||||| |||||||||||| || | |||||||||||
Sbjct 795 TGTCTGACCGAGGTTGCAGCTCTTAATTTCGGGGACTTCTACAATGTCCAATATGTCAAC 854
Query 859 ATGTACAGCAT-TTTCATGA-ATCAGTTGCAGGCAATTCTCCCTTTAAATTTAAATATCC 916
||||||| ||| ||| || | ||| ||| |||||||||||| | | ||||||||
Sbjct 855 ATGTACACCATATTT-AT-AGGGCAGCTGCGGGCAATTCTCCCACCGAGTACAAATATCC 912
Query 917 CTGAGGCATATTCAACTGGAAGTAGTGAAGAACAGGCTTTTATCCAGAACTTGGCACTGT 976
||||||||||||||| ||||||| |||||||||| || |||||||||||| |||||||||
Sbjct 913 CTGAGGCATATTCAAGTGGAAGTGGTGAAGAACAAGCATTTATCCAGAACCTGGCACTGT 972
Query 977 TTTTCACTTCGTTTTTCAAGTTACATATAAAAATCCTAGAATCTGCACCCGAAAATATTT 1036
|||||||||| ||||||||||| ||||| | |||||||||| || || ||| | ||
Sbjct 973 TTTTCACTTCCTTTTTCAAGTTTCATATTCGAGTCCTAGAATCAGCGCCAGAAGTTGTTG 1032
Query 1037 CTCTATTACTTGCGGGTCTGGGATATCTCATTAGCATATCGTATGTTGATGACACTGAAG 1096
|| | |||||||| ||||| | ||||||||||| ||||| |||||||||||||||||||
Sbjct 1033 CTTTGTTACTTGCTGGTCTCGAATATCTCATTAATATATCATATGTTGATGACACTGAAG 1092
Query 1097 TATTCAAGGTTTGTTTGGACTATTGGAATTCATTAGTGTTGGAGTTGTTTGGGACGCGAC 1156
|||| |||||||||||||| |||||||| || || || |||||| ||||| || || ||
Sbjct 1093 TATTTAAGGTTTGTTTGGATTATTGGAACTCGTTGGTTTTGGAGCTGTTT--GATGC-AC 1149
Query 1157 ATC---ATGCGTG-TCACCCTGCACTAACTCCAAGTCTGTTTGGATTGCAAATGGCTTTC 1212
||| || | || | |||||||| ||| | |||| ||| | |||||||| ||| |||||
Sbjct 1150 ATCATAATTC-TGATAACCCTGCAGTAAGTGCAAGCCTGATGGGATTGCAGATGCCTTTC 1208
Query 1213 CTTCCTAGTACAGTTGATGGTGTTAAATCTGAAGTCACTG-AGCGGCAAAAACTTTATTC 1271
|||||| ||| |||||||| || ||| |||||| || |||||| ||||||||||
Sbjct 1209 CTTCCTGGTATGGTTGATGGCCTTGGTTCTCAAGTCA-TGCAGCGGCGTCAACTTTATTC 1267
Query 1272 -AGATCCAATGTCAAAATTAAG-GGGACTCATGATTAGTCGCACGGCTAAGCCTGAAGAA 1329
| | |||||||| |||||||| ||| | ||||||| |||| ||| ||||||||||||
Sbjct 1268 TA-ACCCAATGTCCAAATTAAGAGGG-TTAATGATTAACCGCATGGCGAAGCCTGAAGAA 1325
Query 1330 GTG-TTAATTGTTGAGGACGAAAATGGGAACATTGTTCGTGAAACTATGAAGGATAATGA 1388
||| || |||||||| || |||||||||||||| || |||||||| |||||||| |||||
Sbjct 1326 GTGCTT-ATTGTTGAAGATGAAAATGGGAACATCGTCCGTGAAACCATGAAGGACAATGA 1384
Query 1389 TGTTCTTGTCCAGTATAAGATAATGCGGGAGACATTAATCTACCTCTCACACCTTGATCA 1448
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1385 TGTTCTTGTCCAGTATAAGATTATGCGGGAGACATTAATCTACCTCTCACACCTTGACCA 1444
Query 1449 TGAAGATACCGAAAAACAGATGTTGAGTAAGCTAAGCAAACAGTTGAGCGGGGAGGAATG 1508
||| |||||||| || ||||||||||| ||||||| |||||| || || |||||||||||
Sbjct 1445 TGATGATACCGAGAAGCAGATGTTGAGGAAGCTAAACAAACAATTAAGTGGGGAGGAATG 1504
Query 1509 GGCATGGAACAATCTA-AACACTTTATGCTGGGCTATTGGGTCTATTTCTGGGTCCATGG 1567
|||||||||||| || |||||||| |||||||||||||| ||||||||||| || ||||
Sbjct 1505 GGCATGGAACAA-CTTGAACACTTTGTGCTGGGCTATTGGATCTATTTCTGGATCTATGG 1563
Query 1568 TAGTAGAACAGGAAAACAGATTTCTCGTGATGGTTATCCGTGATTTGTT-AAGTTTATGT 1626
|| ||| ||||||||||| ||| | |||||||| || ||||||||||| || |||||||
Sbjct 1564 CAGAAGATCAGGAAAACAGGTTTTTGGTGATGGTCATTCGTGATTTGTTGAA-TTTATGT 1622
Query 1627 GAAGT--CGTCAAGGGAAAAGACAATAAAGCTGTTATTGCGAGCAACATCATGTACGTTG 1684
||| | | | |||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 1623 GAAATTAC-T-AAGGGAAAAGACAATAAAGCCGTTATTGCGAGCAACATCATGTATGTCG 1680
Query 1685 TTGGACAATATTCAAGATTCTTAAGAGCCCATTGGAAGTTTTTGAAGACAGTTGTCCATA 1744
|||| || || | ||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 1681 TTGGCCAGTACCCGAGATTCTTAAGGGCCCATTGGAAGTTTTTGAAGACAGTTGTGAACA 1740
Query 1745 AGCTGTTTGAATTTATGCATGAGACGCATCCTGGTGTTCAGGACATGGCTTGCGACACAT 1804
|| |||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1741 AGTTGTTTGAATTCATGCATGAGACACATCCTGGTGTTCAGGACATGGCATGTGACACAT 1800
Query 1805 TCTTAAAAATTGTTCAGAAGTGTAAGCGAAAATTTGTTATTGTTCAGGTTGGAGA-AAGT 1863
|||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||| || |
Sbjct 1801 TCTTGAAAATAGTTCAAAAGTGCAAGCGAAAATTTGTTATTGTACAGGTTGGAGAGAA-T 1859
Query 1864 GAGCCATTTGTGTCTGAACTTCTATCAGGCCTTGCTACAA-TCGT-CGGAGATCTTCAAC 1921
|| |||||||| ||||||||||||||||||||||| |||| | || | ||||||| | |
Sbjct 1860 GAACCATTTGTATCTGAACTTCTATCAGGCCTTGCAACAACT-GTTCA-AGATCTTGAGC 1917
Query 1922 CTCATCAGATTCA-TACATTTTATGAATCTGTTGGTAGTATGATCCAGGCAGAATCAGAT 1980
||||||| || || | ||||||||||||| ||||||| ||||||||| |||||| |||||
Sbjct 1918 CTCATCAAATACACT-CATTTTATGAATCAGTTGGTAATATGATCCAAGCAGAACCAGAT 1976
Query 1981 CCTCAGAAGAGGGGGGAATACCTCCAGAGGTTGATGGCTCTCCCGAATCAGAAATGGGCA 2040
||||||||| | | ||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct 1977 CCTCAGAAGCGAGATGAATATCTCCAGAGGTTGATGGCACTCCCCAACCAGAAATGGGCA 2036
Query 2041 GAAATTATAGGACAAGCACGTCAAAGTGCAGATAT-CCTCAAGGAACCAGATGTGATACG 2099
||||| |||||||| ||||| ||||||| ||| || ||||||||| |||| |||||||||
Sbjct 2037 GAAATCATAGGACAGGCACGCCAAAGTGTAGA-ATTCCTCAAGGATCCAGGTGTGATACG 2095
Query 2100 TACTGTGCTTAATATCCTCCAGACAAATACGCGCGTTGCAACTTCACTAGGAACATTCTT 2159
|| |||||||| ||||| ||||| ||||| | | ||| |||||||| ||||| | |||
Sbjct 2096 AACAGTGCTTAACATCCTACAGACTAATACTAGTGCTGCTACTTCACTGGGAACCTACTT 2155
Query 2160 CCTGTCTCAAATTTCGTTGATCTTCTTGGATATGCTGAATGTTTACAGAATGTATAGTGA 2219
| | || |||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2156 CTTATCCCAAATTTCCTTGATCTTCTTGGATATGCTGAATGTATACAGAATGTACAGTGA 2215
Query 2220 ACTCGTTTCAAGCAGCATTGCTAATGGTGGCCCATACGCTTCGA-GAACATCTCTTGTTA 2278
|| || |||| || |||| || | || || ||||| ||||| | || ||||| |||| |
Sbjct 2216 GCTTGTGTCAACCAACATTACTGAGGGAGGACCATATGCTTCCAAGA-CATCTTTTGTAA 2274
Query 2279 AACTTTTAAGGTCTGTTAAGAGGGAAATTCTTAAGCTGATAGAGACGTTTTTAGATAAAG 2338
|||| ||||| |||||||||||||||| |||||||||||||| || || ||||| ||||
Sbjct 2275 AACTCTTAAGATCTGTTAAGAGGGAAACCCTTAAGCTGATAGAAACCTTCTTAGACAAAG 2334
Query 2339 CTGAAAACCAGCCACACATTGGAAAACAGTTTGTTCCACCAATGATGGA-TCAAGTACTT 2397
|||| |||| |||||||| || ||||| ||||| || ||||||||||| ||| ||||||
Sbjct 2335 CTGAGGACCAACCACACATAGGGAAACAATTTGTGCCGCCAATGATGGAATCA-GTACTT 2393
Query 2398 GGCGACTATGCAAGAAATGTTCCTGATGCAAGAGAATCAGAAGT-CTTGTCACTCTTTGC 2456
|| |||||||| || ||||| |||||||| || ||||| ||||| ||| |||||||||||
Sbjct 2394 GGTGACTATGCGAGGAATGTGCCTGATGCTAGGGAATCCGAAGTTCTT-TCACTCTTTGC 2452
Query 2457 GACAATAATCAACAAATACAAGGTTGT-AATGCGAGATGAAGTTCCCCTCATATTTGAAG 2515
|| || || ||||| ||||||| | |||| ||| || || || | |||||||||||
Sbjct 2453 AACGATTATAAACAAGTACAAGGC-GACAATGTTAGAAGACGTGCCTCACATATTTGAAG 2511
Query 2516 CTGTTTTCCAGTGCACATTGGAGATGATTACTAAGAATTTTGAAGATTACCCAGAGCACC 2575
|||| |||||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||
Sbjct 2512 CTGTATTCCAGTGTACATTGGAGATGATAACTAAGAACTTTGAAGATTATCCAGAACACC 2571
Query 2576 GTCTCAAGTTTTTCTCGTTACTTCGTGCTATTGCTACATTTTGTTTCCGTGCGTTGATAC 2635
| |||||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 2572 GCCTCAAGTTTTTCTCATTACTCCGTGCTATTGCTACATTTTGTTTCCCTGCCTTGATAA 2631
Query 2636 AGTTGTCAAGTGAGCAACTGAAGCTAGTGATGGATTCAGTTATCTGGGCATTTAGGCATA 2695
|||| |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 2632 AGTTATCAAGTCCGCAACTGAAGCTAGTGATGGATTCAATTATCTGGGCATTTAGACATA 2691
Query 2696 CTGAAAGAAATATCGCTGAAACTGGGCTCAATCTCTTGCTCGAGATGCTGAAAAACTTTC 2755
|||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||
Sbjct 2692 CTGAGAGAAATATCGCTGAAACCGGGCTTAATCTTTTGCTTGAGATGCTGAAAAACTTTC 2751
Query 2756 AGAAATCTGACTTTTGTAA-CAAATTCTACCAAACATACTTTCTGCAAATTGAGCAAGAA 2814
|| ||||||| |||||||| ||| |||||||| ||||||||| ||||||| |||||||||
Sbjct 2752 AGCAATCTGAGTTTTGTAATCAA-TTCTACCAGACATACTTTATGCAAATCGAGCAAGAA 2810
Query 2815 GTATTTGCTGTCTTGACCGATACCTTCCACAAGCCTGGGTTCAAGTTGCATGTGTTGGTG 2874
||||||| || ||||| ||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 2811 ATATTTGCCGTTTTGACTGATACCTTCCATAAGCCTGGCTTCAAGCTGCATGTGTTGGTG 2870
Query 2875 TTGCAGCA-CT-TATTTAGCCTGGTTGAGAGCGGAT-CATTGGCAGAACCATTGTGGGAT 2931
||||||| || | ||| | ||| ||||||||| | | ||| ||||||| |||||||||
Sbjct 2871 CTGCAGCATCTGT-TTT-GTCTGCCTGAGAGCGG-TGCTTTGACAGAACCTTTGTGGGAT 2927
Query 2932 GCTGCAACGGTACCGCATCCTTATTCAAATAATG-TCGCCTTTGTGCTTGAGTACACCAC 2990
|| |||| || || | || ||| | || |||| | || ||||| | ||| |||||||
Sbjct 2928 GCCACAACTGTTCCTTACCCGTATCCGAACAATGCT-GCATTTGTTCGTGAATACACCAT 2986
Query 2991 CAAGCTTCTAAGCTCATCATTCCCCAACATGACTACAACAGAGGTGACACAGTTTGTGAA 3050
||||| || ||||| |||||||||||||||||| || ||||||| ||||| |||||| |
Sbjct 2987 TAAGCTACTGAGCTCTTCATTCCCCAACATGACTGCAGCAGAGGTCACACAATTTGTGGA 3046
Query 3051 TGGACTTTACGAGTCGAGAAACGAT--GT-TGGCAGATTTAAGGATAACATACGCGACTT 3107
||||||||||||||| ||||| || || ||| | |||||| ||||||| || |||||
Sbjct 3047 TGGACTTTACGAGTCTAGAAATGACCCGTCTGG-A--TTTAAGAATAACATTCGTGACTT 3103
Query 3108 CCTTATACAGTCCAAGGAATTTTCTGCTCAGGATAACAAAGATTTATATGCTGAGGAAGC 3167
|||| ||||||| ||||| ||||| |||||||||||||||||| | ||||||||||||||
Sbjct 3104 CCTTGTACAGTCTAAGGAGTTTTCCGCTCAGGATAACAAAGATCTCTATGCTGAGGAAGC 3163
Query 3168 TGCTGCCCAAATG-gagagagagagaCAAAGAATGCTTTCGATTCCTGGACTTATAGCTC 3226
||||| || | | ||||||||| | ||||||||||||||||||||||| ||||| ||||
Sbjct 3164 AGCTGCACAGA-GAGAGAGAGAGCGTCAAAGAATGCTTTCGATTCCTGGGCTTATTGCTC 3222
Query 3227 CCAGCGAAATTCAAGACGACATGG 3250
| | || ||||||||||| ||||
Sbjct 3223 CTAATGAGATTCAAGACGAGATGG 3246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131222511704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5