BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03120.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477560 jgi|Araly1|477560|fgenesh2_kg.3__261__AT3G03120.1 1714 0.0
Ahg488569 jgi|Araly1|488569|fgenesh2_kg.6__1703__AT5G17060.1 697 0.0
> Ahg477560 jgi|Araly1|477560|fgenesh2_kg.3__261__AT3G03120.1
Length=1135
Score = 1714 bits (928), Expect = 0.0
Identities = 1096/1170 (94%), Gaps = 40/1170 (3%)
Strand=Plus/Plus
Query 5 GAATCCATTGTACCGAAAACGCAACCTTTGCTTTCTTGGGAAACTCTCTGCAATTCCT-G 63
||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||| |
Sbjct 2 GAACCCATTGTACCGAAAACGCAACCTTTGCTTTCTCGGGAAACTCT-T-CAATTCCTGG 59
Query 64 GAGAAATCGACCATCATCATCTTAGCTT-TGATTCTCTCTGTGTTTCTTCACTTTCAATT 122
||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct 60 GAGAAATCG------ATCATCTTAGCTTCTGATTCTCTCTGT-TTTCTTCAGTTTCAATT 112
Query 123 TC-TGTTTTGGTTTATCGATAAGAGAAAGTAAAATTCGTC-TGTGGGGGTTTAAGCTTTT 180
|| | ||||||||| |||||||||||||||||||| | || |||| ||||||||||||||
Sbjct 113 TCTTATTTTGGTTTGTCGATAAGAGAAAGTAAAATACTTCTTGTGAGGGTTTAAGCTTTT 172
Query 181 TTGGGGTGAGAGATGGGTCAAACTTTTCGCAAGCTTTTCGATACCTTCTTCGGCAACCAG 240
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 173 TTTGGGTGAGAGATGGGTCAAACTTTTCGCAAGCTTTTCGATACTTTCTTCGGCAACCAG 232
Query 241 GAGATGAGGGTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACGATACTATACAAG 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 233 GAGATGAGGGTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACCATACTGTACAAG 292
Query 301 CTCCACATAGGAGAAGTTCTGTCTACTGTTCCCACAATCGGTTTCAATGTTGAGAAAGTT 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 293 CTCCACATAGGAGAAGTTCTGTCAACTGTTCCCACAATCGGTTTCAATGTTGAGAAAGTT 352
Query 361 CAGTACAAGAATGTCATCTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCCC 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CAGTACAAGAATGTCATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCCC 412
Query 421 TTGTGGAGGCATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TTGTGGAGGCATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGAC 472
Query 481 CGAGAGAGGATTGGTAAAGCGAAGCAAGAATTTCAGGATATCATAAGGGACCCATTCATG 540
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 473 CGAGAGAGGATTGGTAAAGCCAAACAAGAATTTCAGGATATCATAAGAGACCCATTCATG 532
Query 541 CTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCT 592
Query 601 CGAGAAGTATGTGAAGGGCTTGGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CGAGAAGTATGTGAAGGGCTTGGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAA 652
Query 661 GGCACATGTGCTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GGCACATGTGCTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACA 712
Query 721 CTCAAAGAGGTTAAAGCCGCTGGTTACTCATCAGTTGGTCCCTCGTTTTAGCACCCCTAC 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 713 CTCAAAGAGGTTAAAGCCGCTGGTTACTCATCAGTTGGTCCCTCGTTTTAGCTCTC-T-C 770
Query 781 CATTTGCAAAGaaaaaaaTCCCTGACTAGCTAAATTGACATACGAAAGTACCAAATCAAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CATTTGCAAAGAAAAAAATCCCTGACTAGCTAAATTGACATACGAAAGTACCAAATCAAG 830
Query 841 CTCATGGTGTCTCCTGTCTACTCACCATTATATACTTTACATCCATGGCCACACCCTTCT 900
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 831 CTCATGGTGTCTCCTGTCTACTCACCATTATATACTTTAGATCCATGGCCACACTCTTCT 890
Query 901 TCGTGGCCACTGATATGGTAATATCACAAAACTAATGAAAATCTCTCAAGACTTTTGTAA 960
|| ||||| | | ||||||||||||| | ||||||||||||| ||||||||||
Sbjct 891 TCTTGGCC---G----G-TAATATCACAAAA-T---GAAAATCTCTCAAAACTTTTGTAA 938
Query 961 TGGAAGTGTTTTTGTTTTTCTTTCGTCTTCACATGGCTCTGCTTCTTAAAGCTAATGTTA 1020
||||| ||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 939 TGGAATTGTTTTTCTTTTTCTTTTGTCTTCACATGGCTTTGCTTCTGAAAGCTAATGTTA 998
Query 1021 GTATCAATTAGGCTCCTTTTTGCATAATATGACTTTGGAGCTTTATTGTAAATTCTGATG 1080
||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 999 GTATCAACTAGGCTCCTTTTTGCATAATATGACTTTGGAGCTTCACTGTAAATTCTGATG 1058
Query 1081 GATACAAAATGTATAAATCTGACAAAAATTGCAAAATTCTCATGAGATTATTAAAGTCTC 1140
|||| || |||||||||||| ||||| || | | | |||||||| ||||||| ||
Sbjct 1059 GATA-AA--TGTATAAATCTG-CAAAA-TT-C----T-C--ATGAGATTGTTAAAGTGTC 1105
Query 1141 CCTTATAGCTATGATAGATGATTGATCTTT 1170
|||||||||||| |||||||||||||||||
Sbjct 1106 CCTTATAGCTATAATAGATGATTGATCTTT 1135
> Ahg488569 jgi|Araly1|488569|fgenesh2_kg.6__1703__AT5G17060.1
Length=841
Score = 697 bits (377), Expect = 0.0
Identities = 514/581 (88%), Gaps = 6/581 (1%)
Strand=Plus/Plus
Query 193 ATGGGTCAAACTTTTCGCAAGCTTTTCGATACCTTCTTCGGCAACCAGGAGATGAGGGTC 252
||||||||| ||||||| ||||| |||||||| |||||||| || || || |||||||||
Sbjct 211 ATGGGTCAAGCTTTTCGTAAGCTATTCGATACTTTCTTCGGAAATCAAGAAATGAGGGTC 270
Query 253 GTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACGATACTATACAAGCTCCACATAGGA 312
||||||||||| |||||||| |||||||||||||| || || |||||||| || || |||
Sbjct 271 GTTATGCTGGGGCTGGATGCTGCTGGCAAAACAACTATTCTCTACAAGCTTCATATTGGA 330
Query 313 GAAGTTCTGTCTACTGTTCCCACAATCGG-TTTCAATGTTGAGAAAGTTCAGTACAAGAA 371
|||||| |||||||||||||||| || || ||| ||||||||||||||||||||||||||
Sbjct 331 GAAGTTTTGTCTACTGTTCCCACCATTGGATTT-AATGTTGAGAAAGTTCAGTACAAGAA 389
Query 372 TGTCATCTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCC-CTTGTGGAGGC 430
||| || |||||||||||||||||||||||||||||||| ||||| || ||| |||||||
Sbjct 390 TGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAACTGAGACCTCTT-TGGAGGC 448
Query 431 ATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGACCGAGAGAGGA 490
| |||||||||||||| ||||||||||| |||||||| || ||||| || ||||||||||
Sbjct 449 ACTACTTCAATAATACTGATGGACTTATTTACGTGGTGGATTCCTTAGATCGAGAGAGGA 508
Query 491 TTGGTAAAGCGAAGCAAGAATTTCAGGATATCATAAGGGACCCATTCATGCTCAACAGTG 550
| || ||||| || |||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 509 TCGGGAAAGCAAAACAAGAATTTCAGGAGATCATAAAAGACCCATTCATGCTAAACAGTA 568
Query 551 TCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCTCGAGAAGTAT 610
||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 569 TCATTCTGGTGTTTGCAAACAAACAGGACATGAGAGGAGCCATGTCACCGAGAGAAGTAT 628
Query 611 GTGAAGGGCTTGGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAAGGCACATGTG 670
|||||||||| |||||| ||||||||||||||||||||||||| |||||||| || ||||
Sbjct 629 GTGAAGGGCTAGGCTTATTTGATCTCAAGAACAGGAAATGGCACATACAAGGTACCTGTG 688
Query 671 CTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACACTCAAAGAGG 730
|||||| ||||||||||| ||||||||||| ||||||||||| |||| || ||||| |
Sbjct 689 CTCTTCGTGGAGATGGGCTTTATGAAGGCTTGGACTGGTTATCATCTACTCTTAAAGATG 748
Query 731 TTAAAGCCGCTGG-TTACTCATCAGTTGGTCCCTCGTTTTA 770
||||||||||||| || | |||| ||||| |||||||||||
Sbjct 749 TTAAAGCCGCTGGATT-CACATCGGTTGGCCCCTCGTTTTA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5