BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03130.1
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477561 jgi|Araly1|477561|fgenesh2_kg.3__262__AT3G03130.1 2673 0.0
Ahg488576 jgi|Araly1|488576|fgenesh2_kg.6__1710__AT5G17160.1 202 8e-51
> Ahg477561 jgi|Araly1|477561|fgenesh2_kg.3__262__AT3G03130.1
Length=1737
Score = 2673 bits (1447), Expect = 0.0
Identities = 1647/1743 (94%), Gaps = 15/1743 (1%)
Strand=Plus/Plus
Query 1 ATAGCAGAAACGTCTTGTTTTTCAACTGTCATTTTCTCAACC-AGATCAAACTTTTTGTT 59
|||||||||||||||||||||||||||||||||||||||||| | ||| ||| || ||
Sbjct 1 ATAGCAGAAACGTCTTGTTTTTCAACTGTCATTTTCTCAACCAAAATCCAAC---TT-TT 56
Query 60 TTCATTTTCTCTAATTCGTCGCCATGGATTTCCACAGTCTTCCTCGAAGAGATCTTCAAT 119
|||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 57 TTCATTTTCTCTGATTCGTCGCCATGGATTTCCACTGTCTTCCGAGAAGAGATCTTCAAT 116
Query 120 TTTTCTGTAAGAGGAACAAAATCCCAGCCAATATGACCAATATTGCCATGGCCGATGCTC 179
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 117 TTTTCTGTAAGAGAAACAAAATCCCAGCCAATATGACCAATATCGCCATGGCTGATGCTC 176
Query 180 TCAGAGATCTTGAGATTGTGGAAGGTATGGATGAGTTCATGGATCCATCTCGTGACCAGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TCAGAGATCTTGAGATTGTGGAAGGTATGGATGAGTTCATGGATCCATCTCGTGACCAGT 236
Query 240 CTCCAACCAGTGTTGCAAGAAATTTGCCAAGTGCTGCTCGAACTGCTGCTAGAACAACTC 299
||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 237 CTCCAACCAGTGTAGCTAGAAATTTGCCAAGTGCTGCTCGTACTGCAGCTAGAACAACTC 296
Query 300 GAAGGAAGTCCACCAAGGATGAAACTCAGTCATCAGAATTGGTGACCCGTTCTTGTTATG 359
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAAGGAAGACCACGAAAGATGAAACTCAGTCATCAGAATTGGTGACCCGTTCTTGTTATG 356
Query 360 TGGTGAGCAAGTCCTTAGCTGGAGAAATGGATCAAGAAAACAAGGACATGAATATGCTCC 419
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 357 TGGTGAGCAAGTCCTTAGCTGGAGAAATGGATCAAGAAAACAAAAACATGAATATGCTCC 416
Query 420 AGAATCCATCAGTACCTCAGAGCCGTGCTGTGAAGTTAGATGTCAATGATATCATGCCTG 479
|||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct 417 AGAATCCATCAGTACCTCAGAGCCTTGCTGTGAAGTTAGATGTCACTGATATGATGCCTG 476
Query 480 AAGCCAATGTGAGCAAAACTCCAGCGGCTAGAAGCACAAGAAGGGCTCAGGCCGCTGCGT 539
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 477 AAGCCAATGTGAGCAAAACTCCAGCGGCGAGAAGCACAAGAAGGGCTCAGGCAGCTGCAT 536
Query 540 CTTCCAAGAAGGATGAGTCGGTTCAGCGGGTTTACAGTACCAGAAGGTCTGTCAGATTGT 599
| |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 537 CCTCCAAGAAGGATGAGTCGGTTCAGAGGGTATACAGCACCAGAAGGTCTGTCAGATTGT 596
Query 600 TAGAAGAATCCATGGCTGACCTGAGTTTGAAAACCAATGTACCTGTAAAGAAGCACGAAG 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 597 TAGAAGAATCCATGGCTGACCTGAGTTTGAAAACCAATGTACCTGCAAAGAAGCACGAAG 656
Query 660 ATTCTCCAGCAGGTTCCAAATTCCAGGCAAAGTCAGATGAGAACTCAGAAAATACTGACA 719
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 657 ATTCTCCAGCAGGTTCCAAATTCCAGGAAAAGTCAGATGAAAACTCAGAAAATACTGACA 716
Query 720 AGGGTGGAGTAATGTCAGGGAGAGATTTAAATGATTCCTTGGAGAAGGAATGGGATGGCT 779
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
Sbjct 717 AGGGTGGAGTAATGTCAGTGAGAGATTTAAATGATTCGTTGGAGAAGGAATGGGATGGTT 776
Query 780 CAAAGAATGATCCAGATCTTGATATATTATATGGTGATCTTGGTGATATCACTTTCTTTG 839
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 777 CAAAGAATGATCCAGATCTTGATATATTATATGGTGATCTTGGAGATATCACTTTCTTTG 836
Query 840 ATGCATCCACCAGTAAGGAACATCTGAATAGAACAGATTCCAGCACGGTTTCAGCTTCAG 899
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct 837 ATGCATCCACCAGTAAGGAACAGATGAATGGAACAGATTCCAGCACGGTTTCAGCTTCCG 896
Query 900 ATAGTTTTGTTCTAGTCAATGAACATGAAACTTCGCAGGAGGATGGTTTTGTTGTTGTAG 959
||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct 897 ATAGTTTTGTTCTAGTCAATGAACAAGAAACTTCGAAGGAGGATGATTTTGTTGTTGTAG 956
Query 960 ACCATGCTACTTCTACTACCACCACAAACACTTTGGCCTGCAACAAAGAATCAGAGCCTG 1019
|||||||| ||||||||||||||||||||||||| || ||| |||||||| ||||| |||
Sbjct 957 ACCATGCTGCTTCTACTACCACCACAAACACTTTAGCTTGCTACAAAGAAGCAGAGTCTG 1016
Query 1020 AGCAAATGAAGATTGATTCTGAATCTGAATCAGAGGAAACAGAATATGAGACTGATCCAT 1079
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1017 AGCAAATGAGGATTGATTCTGAATCTGAATCAGAGGAAACAGAATATGAAACTGATCCAT 1076
Query 1080 GGGAGGGTGATGATTTTGGTGTTGCTGTTCACACAAACCAAGAGGCATTTGAGTCTAAAG 1139
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1077 GGGAGGGTGATGATTTTGGTGTTGCTGTTGACACAAACCAAGAGGCATTTGCGTCTAAAG 1136
Query 1140 TCTCA-GCTAGTGATAATGTGAGTAAGGTTGACTCAGTGGCAACTGTTCTGATAGCTGAT 1198
|| | |||||||||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct 1137 TC-CGTGCTAGTGATAATGTGAGTAAAGTTGACTCAGTCACAACAGTTCTGATAGCTGAT 1195
Query 1199 GAATCGAAAGAACTCGATTTTTCTTCTTCACCTCTTGCTGTGGAGGAACTCGAAGAAGAC 1258
|||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||| ||||
Sbjct 1196 GAATCGAAAGAACTTGATTTCTCTCCTTCACCTCTTGCTGAGGAGGAACTCGAAGTAGAC 1255
Query 1259 AGCGATGAATGGTCTGATTATGAGATAGGCGAGGTCGAGTTGGAGGAAAACAGCTGCGGG 1318
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||
Sbjct 1256 AGCGATGAATGGTCTGATTACGAGATAGGCGAGGTTGAGTTAGAGGAAAACAGTTGCGCA 1315
Query 1319 TCTGAAGAATCCATTGAAATTGAATCAGAAGAGGCTCCTG-TTTCAGATAAGAAGACTCC 1377
||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1316 TCTGAAGAATCGATTGATATTGAATCAGAAGAGGCTCCTGGTTT-AGATAAGAAGACTCC 1374
Query 1378 AGCTTCTTCCTCTTCATCAAGTCTTGCTGGTAATGAGACAAGAACTTCGTTGTCTCCATT 1437
||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1375 AGCTTCTTCTTCTTCCTCAAGTCTTGCTGGTAATGAGACAAAAACTTCGTTGTCTCCATT 1434
Query 1438 TGAAGCAGAATCAATCTTAGAGAGCGAGGAGGACAAGGAGATGGCTGTTAACAACAATGG 1497
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1435 TGAAGCAGAATCAATCTTAGAGAGCGAGAAGGACAAGGAGATGGCTGTTAACAACAATGG 1494
Query 1498 AGAGGGGAAAGCTGAGGCCGAGGTTAAGAAGACAAAGAAGAAGAAGA---CGATTGATGA 1554
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1495 AGAGGGGAAAGCTGAGGCCGAGGTTAAGAAGACAAAGAAGAAGAAGAAGACGATTGATGA 1554
Query 1555 AGAGCTCAAAGATGTGAGCATGAGGCAACTAACGAAGATGGTGAAAGAACTTGCTATCAA 1614
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1555 AGAGCTCAGAGATGTGAGCATGAGGCAACTAACGAAGATGGTGAAAGAACTTGCTATTAA 1614
Query 1615 GAGTAAGCAACAACACAAGGGTCCTGAGTAATGAAGAAAAACTGTTTTAGCCTTTTTGAA 1674
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1615 GAGTAAGCAACAACACAAGGGTCCCGAGTAATGAAGAAAAACCCTTTTAGCCTTTTTGAA 1674
Query 1675 ATCATTTCCTT-CTCTCTTGGAAAAAtgttgatgtttctttt--gtttcctttagggtgt 1731
||||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||||||
Sbjct 1675 ATCATTTCCTTTCTCTCTTGGAAAAATATTGATGTTTTTTTTTCGTTTCCTTTAGGGTGT 1734
Query 1732 tgt 1734
|||
Sbjct 1735 TGT 1737
> Ahg488576 jgi|Araly1|488576|fgenesh2_kg.6__1710__AT5G17160.1
Length=1951
Score = 202 bits (109), Expect = 8e-51
Identities = 262/333 (79%), Gaps = 22/333 (7%)
Strand=Plus/Plus
Query 83 ATGGATTTCCACAGTCTTCCT-CGAAGAGATCTTCAATTTTTCTGTAAGAGGAACAAAAT 141
|||||||||||||| ||| | ||||||||||||||||| |||| ||||||||||||||
Sbjct 78 ATGGATTTCCACAGCCTT-TTGAGAAGAGATCTTCAATTTCTCTGCAAGAGGAACAAAAT 136
Query 142 CCCAGCCAATATGACCAATATTGCCATGGCCGATGCTCTCAGAGATCTTGAGATTGTGGA 201
|||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||
Sbjct 137 CCCAGCCAATATGACCAACCTTGCCATGGCCGATGCTCTCAAATCTCTTGAGATTGTTGA 196
Query 202 AGGTATGGATGAGTTCATGGATCCATCTCGTGA-CCAGT-CTCCAACCAGTGTTGCAAGA 259
||| | ||||| | |||| ||| ||| || | ||| | ||| | | ||| | |||
Sbjct 197 TGGTCTTGATGAATACATGAATCAATC-CGA-ATCCAATGCTC-AGC-AGTCTC-CAACC 251
Query 260 AATTT-GCCAAG-TGCTGCTCGAA--CTGCTGCTAGAACAACTCGAAGGAAGTCCAC--C 313
| | | || ||| ||| | | || |||| ||||||||||||||||| ||| |||| |
Sbjct 252 AGTGTAGCAAAGCTGCCAC-CAAATACTGCAGCTAGAACAACTCGAAGAAAGACCACAAC 310
Query 314 AAG-GATGAAACTCAGTCATCAGA--A-TTGGTGACCCGTTCTTGTTATGTGGTGAGCAA 369
|| | ||| ||||||||||| | |||||| ||||||||||| || | ||||||
Sbjct 311 AAAAGCTGAGCCTCAGTCATCATCTCAGTTGGTGTCCCGTTCTTGTCGTGCGACGAGCAA 370
Query 370 GTC-CTTAGCTGGAGAAATGGATCAAGAAAACA 401
||| ||| |||||||||||||| || || ||||
Sbjct 371 GTCTCTT-GCTGGAGAAATGGACCAGGATAACA 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5