BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G03150.1

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927821 jgi|Araly1|927821|scaffold_300278.1                        560    4e-159


> Ahg927821 jgi|Araly1|927821|scaffold_300278.1
Length=403

 Score =  560 bits (303),  Expect = 4e-159
 Identities = 372/405 (92%), Gaps = 6/405 (1%)
 Strand=Plus/Plus

Query  128  CGACGAAGAAACACAGTTTTATGGCAACCACCAGATCGAAGAGCTTTCAGTTGATCACCA  187
            |||||||| |||| ||||||||||| |  |||||||||||||||||||||||||||||| 
Sbjct  1    CGACGAAGCAACAGAGTTTTATGGC-A--ACCAGATCGAAGAGCTTTCAGTTGATCACCG  57

Query  188  GCTTAAGGAAACACCTAGTTAACACACGCGCTTC-CACACGCGCCACCGCCTCTGCTCTC  246
            |||||| |||||| || || ||| |||||||||| | |||||||||||||||||||||||
Sbjct  58   GCTTAAAGAAACATCTGGTAAACCCACGCGCTTCTC-CACGCGCCACCGCCTCTGCTCTC  116

Query  247  TTCCCTTCACGTCGGAGTGGACATTCCTCGGCGTATGACAAGAACGTGGAGGATGAATTG  306
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  117  TTCCCTTCACGTCGGAGTGGTCATTCCTCGGCGTATGACAAGAACGTGGAGGATGAACTG  176

Query  307  CATGCAAGTGCAGTACCTGACGAAGTTATAAAGCCAGATTCTGATAAATATTGGTCTCCT  366
            |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| 
Sbjct  177  CATGCAAGTGCAGTACCTGACGAAATCATAAAGCCAGATTCTGATAAATATTGGTCTCCA  236

Query  367  CACCCCAAAACAGGAGTCTTCGGTCCCTCTACGACTGAGCACAGCGCCACCGCCGAGGGT  426
            || |||||||| ||||| |||||||||||  ||||||||||||||||| |||| ||||||
Sbjct  237  CATCCCAAAACTGGAGTTTTCGGTCCCTCCCCGACTGAGCACAGCGCCGCCGCTGAGGGT  296

Query  427  GCACACCAGGACACAGCAGTGCTGGAGGAGACCGCCTGGTTTCGCCCAACAAGTCTCGAG  486
            |||| |||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct  297  GCACGCCAGGACACAGCGGTGCTGGAGGAGACTGCTTGGTTTCGCCCAACAAGTCTCGAG  356

Query  487  GATTCGGACAAGACTCACCATGTTTGAGT-CTCTCTTTCTCTCTG  530
            || |||||||||||||||||||||| | | |||||||||||||||
Sbjct  357  GACTCGGACAAGACTCACCATGTTTAAATTCTCTCTTTCTCTCTG  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25427985639


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5