BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03160.1
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477563 jgi|Araly1|477563|fgenesh2_kg.3__264__AT3G03160.1 922 0.0
> Ahg477563 jgi|Araly1|477563|fgenesh2_kg.3__264__AT3G03160.1
Length=660
Score = 922 bits (499), Expect = 0.0
Identities = 615/667 (92%), Gaps = 23/667 (3%)
Strand=Plus/Plus
Query 47 AAAATTCAAGCTGCGATTGCGAGGAAGAGAAGAGACTTCAGATCTAGCTTGATCCGGTGA 106
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1 AAAATTCAAGCTGCGATTGC---G-A-AGAAGAGACTTCAGATCTAGCTTGATCCGGTGA 55
Query 107 TAATGGCGCTCGAGTGGGTGGTTTTAGGTTACGCGGCGGCGGCTGAAGCGATTATGGTGG 166
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 56 TAATGGCTCTCGAATGGGTGGTTTTAGGTTACGCGGCGGCGGCCGAAGCGATTATGGTGG 115
Query 167 TGCTATTGACGATGCCAGGACTCGACGGACTCCGCAAGGGATTAGTCGCCGTCACGCGTA 226
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 116 TGCTATTGACGATGCCGGGACTTGACGGACTCCGCAAGGGATTAGTCGCCGTCACGCGTA 175
Query 227 ATCTCCTCAAACCGTTTCTCTCCATAGTTCCTTTCTGTCTCTTCCTCTTAATGGACATCT 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ATCTCCTCAAACCGTTTCTCTCCATAGTTCCTTTCTGTCTCTTCCTCTTAATGGACATCT 235
Query 287 ACTGGAAATACGAAACTATGCCTTCGTGCGATGGCGATTCCTGCACACCGTCAGAGCATC 346
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 236 ACTGGAAATACGAAACTATGCCTTCGTGCGACGGCGATTCCTGCACACCGTCGGAGCATC 295
Query 347 TTCGTCACCAGAAGTCCATGATGAAATCCCAGCGAAACGCGCTTCTCATTGCGGCTGCAC 406
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 296 TTCGTCACCAGAAATCAATGATGAAATCCCAGCGAAACGCGCTTCTGATTGCGGCTGCAC 355
Query 407 TTGTGTTCTACTGGATCCTTTACTCAGTCACCAATTTGGTTGTCAAGATCGAGCATCTTA 466
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 356 TTGTGTTCTACTGGATCCTTTACTCAGTTACCAATTTGGTTGTCAGGATCGAGCATCTTA 415
Query 467 ACCAGAGGATCGAGAGGCTCAGGAACAAGGATTGATCGTCTCGTCTCAGGT----TCAAT 522
||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 416 ACCAGAGGATCGAGAGGCTCAAGAACAAGGATTGATCGTCTCGTCTAAGGTCCAATCAAT 475
Query 523 TAGTGTAATGCCTTTTTT--GGTT----A---TCTTTCCCATTTGGCTAGGTTTTCTCTT 573
|||||||||||||||||| |||| | |||||| |||| |||||||||||| ||
Sbjct 476 TAGTGTAATGCCTTTTTTTTGGTTTTCGAGGATCTTTCTTATTTCGCTAGGTTTTCTGTT 535
Query 574 TTTCAACGTTTCTGATATGTGTCTTTTATCTTGTGGAGATTGAAGGATTTTATCCTACTT 633
|||||| || |||||| |||| |||| || || |||||||||||||||| | ||||||||
Sbjct 536 TTTCAATGTCTCTGATCTGTGCCTTT-ATGTTCTGGAGATTGAAGGATTAT-TCCTACTT 593
Query 634 TTCTATGTTTGGATTCTTATTTGTAACCAGATTGTGATTGTTTCTT---GTTGAATTTTG 690
||||||| |||||||||||||||| ||||||||| |||||||| || |||||||||||
Sbjct 594 TTCTATGCTTGGATTCTTATTTGTTACCAGATTGAGATTGTTTTTTTTTGTTGAATTTTG 653
Query 691 ATTGACT 697
|||||||
Sbjct 654 ATTGACT 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25732968975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5