BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03180.1
Length=629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927824 jgi|Araly1|927824|scaffold_300281.1 752 0.0
> Ahg927824 jgi|Araly1|927824|scaffold_300281.1
Length=464
Score = 752 bits (407), Expect = 0.0
Identities = 440/456 (96%), Gaps = 1/456 (0%)
Strand=Plus/Plus
Query 123 TTGTGCAATTTTTTCGGTAACAATGGCTTCCTTGGAGATGAATGACCTAAAAAAGATAGG 182
|||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGTCCAA-TTCGTCGGTAACAATGGCTTCCTTGGAGATGAATGACCTAAAAAAGATAGG 59
Query 183 GCTAGGTTTGACTGGATTTGGTGTGTTCTTTACATTCCTGGGAGTGATATTTGTGTTTGA 242
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 GCTAGGTTTGACAGGGTTTGGTGTGTTCTTTACATTCCTAGGAGTGATATTTGTGTTTGA 119
Query 243 CAAGGGACTCATAGCCATGGGGAACATCCTCTTCTTAGCTGGTGTGACTCTAACCATTGG 302
|||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 120 CAAGGGACTCATCGCCATGGGGAATGTTCTCTTCTTAGCTGGTGTGACTCTAACCATTGG 179
Query 303 AATCAACCCAGCAATCCAATTCTTTACTAAACGGCAGAATTTTAAGGGTACTATATCATT 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 AATCAACCCAGCAATCCAATTCTTTACTAAACGGCAGAATTTTAAGGGTACTATATCGTT 239
Query 363 TGGATTGGGTTTCTTGTTGGTTGTGTTTGGATGGCCTATTTTCGGTTTGCTTCTTGAATC 422
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 TGGATTGGGCTTCTTGTTGGTTGTGTTTGGATGGCCTATTTTCGGTTTGCTTCTAGAATC 299
Query 423 ATATGGGTTCCTTGTGCTCTTCAGTGGTTTCTGGCCTACACTTGCCGTCTTCCTTCAAAG 482
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATATGGGTTCCTTGTACTCTTCAGTGGTTTCTGGCCTACACTTGCCGTCTTCCTTCAAAG 359
Query 483 GATACCTCTATTAGGCTGGCTTTTGCAGCAACCATACATCAGATCGTTGCTGGATCGCTA 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATACCTCTATTAGGCTGGCTTTTGCAGCAACCATACATCAGATCGTTGCTGGATCGCTA 419
Query 543 CCGTGGAAGGCGTGTCCCTGTCTAAACCTTCTTTGC 578
|||||||||||||||||||||||||||| |||||||
Sbjct 420 CCGTGGAAGGCGTGTCCCTGTCTAAACCCTCTTTGC 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23026241868
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5