BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03190.1
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477565 jgi|Araly1|477565|fgenesh2_kg.3__266__AT3G03190.1 1048 0.0
> Ahg477565 jgi|Araly1|477565|fgenesh2_kg.3__266__AT3G03190.1
Length=759
Score = 1048 bits (567), Expect = 0.0
Identities = 677/726 (93%), Gaps = 24/726 (3%)
Strand=Plus/Plus
Query 1 ACAATTTCATATCAATAGTTACGTATAAACATATAATCAGAAAATGGTGGTCAAAGTATA 60
||||||||||||||||||||||| | |||| | | ||||||||||||||||||
Sbjct 1 ACAATTTCATATCAATAGTTACG------C--ATAA--A-ATAATGGTGGTCAAAGTATA 49
Query 61 TGGGCAGATAAAAGCAGCTAATCCACAAAGAGTATTGCTCTGCTTTTTGGAAAAAGACAT 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 50 TGGGCAGATAAAAGCAGCTAATCCACAAAGAGTATTGCTCTGTTTTTTGGAAAAAGACAT 109
Query 121 CGAGTTTGAAGTAATTCATGTCGATCTCGATAAACTTGAACAGAAAAAACCACAACATCT 180
||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||
Sbjct 110 CGAGTTTGAAGTAATTCATGTAGATCTCGACAAACTTGAACAGAAAAAACCAGAACATCT 169
Query 181 TCTTCGTCAGCCGTTTGGTCAAGTTCCAGCTATTGAAGATGGATATCTGAAGCTTTTTGA 240
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 170 TCTTCGTCAGCCGTTTGGTCAAGTTCCAGCTATTGAAGATGGAGATCTAAAGCTTTTTGA 229
Query 241 ATCGCGAGCCATAGCGAGGTACTACGCGACAAAGTATGCGGACCAAGGAACGGACCTATT 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 230 ATCGCGAGCCATAGCGAGGTACTACGCGACAAAGTATGCGGACCAAGGAACTGACCTATT 289
Query 301 GGGCAAGACTTTGGAGGGACGAGCCATTGTGGACCAGTGGGTGGAAGTTGAGAATAACTA 360
||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 GGGGAAGACATTGGAGAAACGAGCCATTGTGGACCAGTGGGTGGAAGTTGAGAATAACTA 349
Query 361 -TTTCTACGCTGTGGCTCTACCCTTAGTTATGAACGTCGTCTTTAAGCCCAAGTCTGGTA 419
||| |||||||||||||||||||||||||| ||| ||||||||||||||| || ||||
Sbjct 350 CTTT-TACGCTGTGGCTCTACCCTTAGTTATTAACATCGTCTTTAAGCCCATGTTTGGTG 408
Query 420 AGCCA-TGCGACGTCGCTTTGGTTGAGGAGCTAAAGGTCAAGTTCGACAAGGTCCTGGAT 478
||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 409 AGCCAAT-CGACGTCGCTTTGGTTGAGGAGCTAAAGGTCAAGTTCGACAAGGTCTTGGAT 467
Query 479 GTGTATGAGAACCGGTTAGCTACGAACCGGTACTTGGGCGGTGATGAATTCACATTAGCT 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 468 GTGTATGAGAACCGGTTAGCTACGAACCGGTACTTGGGCGGTGATGAATTCACATTGGCT 527
Query 539 GATTTGAGTCATATGCCCGGTATGAGATATATCATGAATGAAACCAGTTTGAGTGGTTTG 598
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 528 GATTTGACTCATATGCCCGGTATGAGATATATCATGAATGAAACCAGTTTGAGCGGTTTG 587
Query 599 GTTACGTCTCGAGAGAATCTCAACCGGTGGTGGAATGAGATTTCGGCTAGACCGGCTTGG 658
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 588 GTTACGTCTCGAGAGAATCTTAACCGGTGGTGGAATGAGATTTCCGCTAGACCGGCTTGG 647
Query 659 AAGAAGCTCATGGAATTGGCTGCCTATTAA-TT-T--G--TC-T--AGTAGTTCTTGTAG 709
|||| ||||||||||||||||||||||||| || | | | | ||||||||||||||
Sbjct 648 AAGATGCTCATGGAATTGGCTGCCTATTAAATTATATGGATGGTTTAGTAGTTCTTGTAG 707
Query 710 TCCTCC 715
||||||
Sbjct 708 TCCTCC 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29469014841
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5