BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03200.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903132 jgi|Araly1|903132|Al_scaffold_0003_260 2217 0.0
Ahg488590 jgi|Araly1|488590|fgenesh2_kg.6__1724__AT5G17260.1 518 6e-146
> Ahg903132 jgi|Araly1|903132|Al_scaffold_0003_260
Length=1446
Score = 2217 bits (1200), Expect = 0.0
Identities = 1367/1448 (94%), Gaps = 10/1448 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCCTGTCTCGTTACCTCCAGGTTTCCGATTCCATCCAACAGACGAGGAACTAATT 60
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1 ATGGCTCCTGTCTCGTTACCTCCAGGTTTCAGATTCCATCCAACGGACGAGGAACTAATT 60
Query 61 ACTTACTATCTAAAAAGAAAGATCAACGGTCTAGAAATCGAACTTGAAGTTATCGCTGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTTACTATCTAAAAAGAAAGATCAACGGTCTAGAAATCGAACTTGAAGTTATCGCTGAA 120
Query 121 GTTGATCTTTACAAGTGTGAGCCATGGGACTTACCAGGGAAGTCCTTGCTTCCGAGCAAA 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GTTGATCTTTACAAGTGTGAGCCATGGGACTTGCCAGGGAAGTCCTTGCTTCCGAGCAAA 180
Query 181 GACCAAGAATGGTACTTCTTCAGCCCACGAGACCGGAAGTATCCCAACGGCTCAAGGACA 240
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 181 GACCAAGAATGGTACTTCTTCAGCCCACGGGACCGGAAGTATCCCAACGGTTCAAGGACG 240
Query 241 AACCGGGCAACTAAAGGCGGTTATTGGAAGGCTACAGGTAAAGACCGCCGAGTTAGTTGG 300
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 241 AACCGAGCAACCAAAGGCGGTTATTGGAAGGCTACGGGTAAAGACCGCCGAGTGAGTTGG 300
Query 301 AGAGACCGAGCCATAGGAACCAAGAAGACATTGGTTTACTACCGTGGGCGCGCGCCACAT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 AGAGACCGAGCCATTGGAACCAAGAAGACATTGGTTTACTACCGTGGGCGCGCACCACAC 360
Query 361 GGCATAAGAACTGGTTGGGTCATGCACGAATATCGACTTGATGAAACAGAATGTGAGCCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGCATAAGAACTGGTTGGGTCATGCACGAATATCGACTTGATGAAACAGAATGTGAGCCT 420
Query 421 TCTGCATACGGCATGCAGGACGCATATGCACTTTGTCGTGTGTTCAAAAAGATTGTTATT 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTGCTTACGGCATGCAGGACGCATATGCACTTTGTCGTGTGTTCAAAAAGATTGTTATT 480
Query 481 GAAGCTAAGCCAAGAGATCAACATCGGTCATATGTCCACGCGATGTCGAATGTGAGTGGT 540
|||||||||||||||||||| || ||||||||||| ||||||||||| ||||||| ||||
Sbjct 481 GAAGCTAAGCCAAGAGATCAGCACCGGTCATATGTACACGCGATGTCCAATGTGATTGGT 540
Query 541 AATTGCTCATCGAGTTTTGACACTTGTTCGGATCTCGAAATCAGTTCAACTACTCATCAA 600
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATTGCTCATCGCGTTTTGACGCTTGTTCGGATCTCGAAATCAGTTCAACTACTCATCAA 600
Query 601 GTTCAAAACACATTCCAACCGCGATTTGGCAACGAGCGATTTAACTCCAACGCAATCAGC 660
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 601 GTTCAAAACACATTCCAACCGCGATTTGGCAACGAGCGTTTTAACTCTAACGCAATCAGC 660
Query 661 AACGAGGATTGGTCACAATACTACGGTTCTTCTTATAGACCGTTCCCTACTCCATATAAG 720
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AACGAGGACTGGTCACAATACTACGGTTCTTCTTATAGACCGTTCCCTACTCCATATAAG 720
Query 721 GTTAACACAGAGATCGAATGTTCAATGTTACAACACAATATATATCTACCACCGTTGCGT 780
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 GTTAATACAGAGATCGAATGTTCAATGTTACAACACAATATATCTCTACCACCGTTGCGT 780
Query 781 GTAGAGAACTCTGCGTTTAGTGATTCCGATTTCTTCACGAGTATGACTCACAACAACGAC 840
|||||||||||| || ||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 781 GTAGAGAACTCTTCGGTTAGTGATTGCGATTTCTTCAAGAGTATGACTCACAACAACGAT 840
Query 841 CATGGCGTTTTCGATGACTTTACTTTTGCTGCAAGTAACTCCAACCACAATAATAGCGTT 900
|||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 841 AATGGCGTTTTTGATGACTTTACTTTCGCTGCAAGTAACTCCAACCACTATAATAGCGTT 900
Query 901 GGTGATCAAGTGATCCACGTTGGCAATTATGATGAACAA---TTAATAACATCTAACCGT 957
||||||||||||||||||||||||||||||||||||||| |||||||| || || | |
Sbjct 901 GGTGATCAAGTGATCCACGTTGGCAATTATGATGAACAACAATTAATAACGTCAAATCAT 960
Query 958 CATATGAACCAGACTGGTTATATAAAAGAGCAGAAGATCAGATCGAGTTTGGATAATACT 1017
|||||||||||| | ||||||||| |||| |||||||||| ||||||||| ||| ||||
Sbjct 961 CATATGAACCAGGCCGGTTATATAGAAGATCAGAAGATCATATCGAGTTTTGATGATACA 1020
Query 1018 GACGAAGATCCAGGATTTCATGGTAACAATACCAATGACAACATAGATATCGATGATTTT 1077
||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 GACCAAGATCTTGGATTTCATGGGAACAATACCAATGACAACATAGATATCGATGATTTT 1080
Query 1078 CTCTCGTTTGATATATATAACGAGGACAACGTGAATCAA-ATAGAAGATAATGAAGACGT 1136
|||||||||||| ||||||||||| ||||| || || |||||||| |||||||||||
Sbjct 1081 TTCTCGTTTGATACGTATAACGAGGAAAACGTAAA-CAGGATAGAAGACAATGAAGACGT 1139
Query 1137 GAATACAAATGAAACCCTTGATTCATCGGGATTCGAGGTGGTTGAAGAAGAAACTAGATT 1196
|||| ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||
Sbjct 1140 AAATAAAAATGAAACCCTTGATTCATCGGAATTCGATGTGGTTGAAGAGGAAACTAGATT 1199
Query 1197 TAACAACCAAATGCTCATCTCGACATATCAAACGACAAAGATTCTATATCACCAAGTCGT 1256
|||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 1200 TAACAACCAAATGCTCATCTCGACATCTCAAACAACGAAGATTCTATATCACCAAGTCGT 1259
Query 1257 ACCTTGTCACACG-TTGAAAGTTCACGTCAATCCTATTAGTCACAATGTGGAAGAGAGAA 1315
||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1260 ACCTTCTCACACGGTT-AAAGTTCACGTCAATCCTATTAATCACAATGTGGAAGAGAGAA 1318
Query 1316 CATTGTTCATTGAAGAGGACAAAGATTCTTGGTTACAAAGAGCTGAGAAGATCACGAAGA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CATTGTTCATTGAAGAGGACAAAGATTCTTGGTTACAAAGAGCTGAGAAGATCACGAAGA 1378
Query 1376 CAAAACTAACACTTTTTAGTTTAATGGCTCAGCAATACTACAAATGTC-T-T-GCTAttt 1432
| ||||||||||||||||||||| |||||||||||||||||||||||| | | || ||||
Sbjct 1379 CTAAACTAACACTTTTTAGTTTAGTGGCTCAGCAATACTACAAATGTCGTCTTGCCATTT 1438
Query 1433 ttttCTGA 1440
||||||||
Sbjct 1439 TTTTCTGA 1446
> Ahg488590 jgi|Araly1|488590|fgenesh2_kg.6__1724__AT5G17260.1
Length=1430
Score = 518 bits (280), Expect = 6e-146
Identities = 431/506 (85%), Gaps = 2/506 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCTGTCTCGTTACCTCCAGGTTTCCGATTCCATCCAACAGACGAGGAACTAATT 60
|||||||| ||||| || ||||||||||| | ||||||||||| ||||| ||||||||
Sbjct 1 ATGGCTCCGGTCTCATTGCCTCCAGGTTTTAGGTTCCATCCAACGGACGAAGAACTAATC 60
Query 61 ACTTACTATCTAAAAAGAAAGATCAACGGTCTAGAAATCGAACTTGAAGTTATCGCTGAA 120
||||||||||| || |||||||||||||||| ||| ||||| || ||| ||||| |||||
Sbjct 61 ACTTACTATCTCAAGAGAAAGATCAACGGTCAAGAGATCGAGCTAGAAATTATCCCTGAA 120
Query 121 GTTGATCTTTACAAGTGTGAGCCATGGGACTTACCAGGGAAGTCCTTGCTTCCGAGCAAA 180
|| || || |||||||| || ||||| | || |||||||||| |||||||| ||||||
Sbjct 121 GTAGACCTCTACAAGTGCGAACCATGTAAATTGGCAGGGAAGTCATTGCTTCCTAGCAAA 180
Query 181 GACCAAGAATGGTACTTCTTCAGCCCACGAGACCGGAAGTATCCCAACGGCTCAAGGACA 240
||||||||||||||||||||||||||||| ||| | || || ||||| || ||||||||
Sbjct 181 GACCAAGAATGGTACTTCTTCAGCCCACGGGACAGAAAATACCCCAATGGTTCAAGGACG 240
Query 241 AACCGGGCAACTAAAGGCGGTTATTGGAAGGCTACAGGTAAAGACCGCCGAGTTAGTTGG 300
||||||||||| ||||||||||| ||||| || || || |||||||| || || ||||||
Sbjct 241 AACCGGGCAACAAAAGGCGGTTACTGGAAAGCCACGGGCAAAGACCGGCGTGTGAGTTGG 300
Query 301 AGAGACCGAGCCATAGGAACCAAGAAGACATTGGTTTACTACCGTGGGCGCGCGCCACAT 360
||||| |||||||| || |||||||| ||||| |||||||||||||| || || ||||||
Sbjct 301 AGAGATCGAGCCATTGGGACCAAGAAAACATTAGTTTACTACCGTGGACGTGCCCCACAT 360
Query 361 GGCATAAGAACTGGTTGGGTCATGCACGAATATCGACTTGATGAAACAGAATGTGAGCCT 420
|| || |||||||||||||||||||| |||||||| || |||||||| ||||| | ||||
Sbjct 361 GGTATTAGAACTGGTTGGGTCATGCATGAATATCGCCTCGATGAAACTGAATGCGTGCCT 420
Query 421 TCTGCATACGGCATGCAGGACGCATATGCACTTTGTCGTGTGTTCAA-AAAGATTGTTAT 479
||||||| || |||||||||||||||||||||||||| ||||| || ||| || || ||
Sbjct 421 TCTGCATTTGGAATGCAGGACGCATATGCACTTTGTCGCGTGTTTAAGAAA-ATAGTGAT 479
Query 480 TGAAGCTAAGCCAAGAGATCAACATC 505
||| || || ||||| ||||||||||
Sbjct 480 TGAGGCGAAACCAAGGGATCAACATC 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5