BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03210.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477567 jgi|Araly1|477567|fgenesh2_kg.3__268__AT3G03210.1 2255 0.0
Ahg917849 jgi|Araly1|917849|Al_scaffold_0008_2600 375 4e-103
Ahg904293 jgi|Araly1|904293|Al_scaffold_0003_1421 375 4e-103
> Ahg477567 jgi|Araly1|477567|fgenesh2_kg.3__268__AT3G03210.1
Length=1489
Score = 2255 bits (1221), Expect = 0.0
Identities = 1431/1525 (94%), Gaps = 44/1525 (3%)
Strand=Plus/Plus
Query 7 AGAAGAAGCCTACGGTTGTTCTGTTCCTTTCAATCTCACCAAATTTTCATCTTCACCTTC 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AGAAGAAGCCTACGGTTGTTCTGTTCCTTTCAATCTCACCAAATTTTCATCTTCGCCTTC 60
Query 67 AATTTTGATAGATTCTCTTCACCGAACCAAATCCGTAACCCTAGCTTCTTCTTAAATTAT 126
||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 61 AATTTGGATGGATTCTCTTCACCAAACCAAATTCGTAACCCTAGCTTCTTCTTAAATTAT 120
Query 127 AGAGAAAAAGAGTTAATTCGAATCTGGATGAAA--TTGG---T-TTTGTCTAGATGGAAA 180
|| | ||| ||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 121 --AG-ACAAG-TTTAATTCGAATCTGGATGAAATTTTGGTTTTGTTTGTCTAGATGGAAT 176
Query 181 TCTAGATGTGTCTGATTCCGAAATCTGAGTCTGAGAGATGCTAGGAGCGATTCATTTGGG 240
||||||||||||||||||||||| | |||||||||||| |||||||||||||| ||
Sbjct 177 TCTAGATGTGTCTGATTCCGAAA-C-----CTGAGAGATGCTGGGAGCGATTCATTTCGG 230
Query 241 AGTATTAGCAGCTTGTTTCGTCCTCTTCGTTCCCATGGCAATGGCTGGTTGGCATCTGAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 AGTATTAGCAGCTTGTTTCGTCCTCTTCGTTCCCATGGCAATGGCTGGTTGGCATCTGAG 290
Query 301 CAGGAACAAGATGCTCTTCTTTAGTGGCGCTTTGTTTATTTCTCTCGCGGTTTGTGTTCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CAGGAACAAGATGCTCTTCTTTAGTGGCGCTTTGTTTATTTCTCTCGCGGTTTGTGTTCA 350
Query 361 TCTCACGCCTTATTTCCCTTCCGTTTCCGACATCGTTGCCTCTGTTTCCTCTGTTGTTGT 420
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 351 CCTCACGCCTTATTTCCCTTCCGTTTCCGACATCGTTGCCTCTGTTTCGTCTGTTGTTGT 410
Query 421 CTACGATCATCGTATCTCTTGTATCAACGAGGTTAATCAGATTGTCTGGGATGTTAAACC 480
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 411 CTACGATCATCGTATCTCTTGTATTAACGAGGTGAATCAGATTGTCTGGGATGTTAAACC 470
Query 481 GGTAC-CGAATCCGGAGTCTGTTCGTAGGAACAATGGCTCAACAAAGCTTGATTATTTCG 539
||| | |||||||||| ||||||||||| || |||||||| |||||||||||||||||||
Sbjct 471 GGT-CACGAATCCGGAATCTGTTCGTAGAAATAATGGCTCGACAAAGCTTGATTATTTCG 529
Query 540 TGAAGAACTGGGATTGGATGAAATCGAGGAAAGTTTTGAGTTGTGAGTTTCAGAAATTGG 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 ACAAGAATTGGGATTGGATGAAATCGAGGAAAGTTTTGAGTTGTGAGTTTCAGAAATTGG 589
Query 600 ATAAGTTCGATGTTTCGGATTTGTTGAATGGATCGTGGGTTGTTGTTGCTGGTGATTCTC 659
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 ATAAGTTTGATGTTTCGGATTTGTTGAATGGATCGTGGGTTGTTGTTGCTGGTGATTCTC 649
Query 660 AGGCGAGATTCGTGGCTTTGTCTTTGTTGAATCTTGTTTTGGGTTCGGATTCCAAGGCTA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AGGCGAGATTCGTGGCTTTGTCTTTGTTGAATCTTGTTTTGGGTTCGGATTCCAAGGCTA 709
Query 720 TGGATTCGGTTAGAGGGGATTTGTTTAGGAGACATAGTGATTACAGCATTGTGGTTAAGG 779
|||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 710 TGGATTCGGTTAGAGGTGATCTGTTTAAGAGACATAGTGATTACAGCATTGTGGTTAAAG 769
Query 780 AGATTGGGATGAAGCTTGATTTTGTTTGGGCTCCTTATGAGAAAGATTTGGATGATCTTG 839
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 770 AGATTGGGATGAAGCTAGATTTTGTGTGGGCTCCTTATGAGAAAGATTTGGATGATCTTG 829
Query 840 TGGTATCTTATAAGAAGATGAAAAAGTATCCTGATGTTGTGATCATGGGAACTGGGTTAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGGTATCTTATAAGAAGATGAAAAAGTATCCTGATGTTGTGATCATGGGAACTGGGTTAT 889
Query 900 GGCATATGCTTCATGTGAACAATGCTTCAGATTTTGGTTTTAGGTTGA-GGCAATTGAGT 958
|||||||||||||||||||||||||||| ||||| |||||| |||||| || ||||||||
Sbjct 890 GGCATATGCTTCATGTGAACAATGCTTCGGATTTCGGTTTTCGGTTGAAGG-AATTGAGT 948
Query 959 AGTCATGTGGAGTCTCTAGTGCCCCTTACGCCAAAGGAGCAAGAAGGAGGTGGGTCGGTC 1018
|||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 949 AGTCATGTGGAGTCTCTAGTGCCCTTTACGCCAAAGGAGCAAGAAGGAGGCGGATCGGTT 1008
Query 1019 TCCGGTAGATCTGTGCATCTGTTCTGGATTGGGATGCCGGTTTTGATCAACGGGATGTTG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TCCGGTAGATCTGTGCATCTGTTCTGGATTGGGATGCCGGTTTTGATCAACGGGATGTTG 1068
Query 1079 AATACGGATGAGAAGAAGGAGAAGATGAGTGATACGGTGTGGCATGAGTATGATAGATCA 1138
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1069 AATACAGATGAGAAGAAGGAGAAGATGAGTGATACCGTGTGGCATGATTATGATAGATCG 1128
Query 1139 CTCGGGGAGAGTAAGATCTTACGTCAAATGGGTGGTCCTCTTATCTTGCTTGATATCCAG 1198
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1129 CTCGGGGAGAGTAAGATCTTGCGCCAAATGGGCGGTCCTCTTATCTTGCTTGATATCCAG 1188
Query 1199 TCGTTTACCTGGAACTGTGGACCGCAATGTACACTTGACGGGATGCATTATGACTCTGCG 1258
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TCCTTCACATGGAACTGTGGACCGCAATGTACACTTGACGGGATGCATTATGACTCTGCG 1248
Query 1259 GTCTATGATGCCGCTGTCCATGTCATGCTCAATGCGTTGCTTATTGAATCTCATCAATCT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1249 GTCTATGATGCCGCTGTCCATGTCATGCTCAATGCGTTGCTTATTGAATCTCATCAAACT 1308
Query 1319 TTATGAGTTCTTGACACGttttttttttgttttttttccttttattttgtttGGGGTTCT 1378
|||||||||||||||||| ||||||| ||| | | ||| ||||
Sbjct 1309 TTATGAGTTCTTGACACGGTTTTTTT--GTT------------A----G---GGG-TTCT 1346
Query 1379 CTTGTAGAGTTTTAAGAGAAGTGGGATGTTCATAGGAATTTTACAACACACGGTGATCCT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1347 CTTGTAGAGTTTTAAGAGAAGTGGGATGTTCATAGGAATTTTACAACACACGGTGTTCCT 1406
Query 1439 TTTGGCCTGAGTGATCTTCACATTGGAGAAGTAAGTGAACTTACATTCATGGCTATAATA 1498
||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||||||
Sbjct 1407 TTTGGCCTGAGTGATCTTCACATTGGA-A-GTAAGTGAACTTGCATTCTTGGCTATAATA 1464
Query 1499 GGTTTAATATCTTTTGACTTTGAGA 1523
|||||||||||||||||||||||||
Sbjct 1465 GGTTTAATATCTTTTGACTTTGAGA 1489
> Ahg917849 jgi|Araly1|917849|Al_scaffold_0008_2600
Length=288
Score = 375 bits (203), Expect = 4e-103
Identities = 261/289 (90%), Gaps = 3/289 (1%)
Strand=Plus/Plus
Query 275 ATGGCAATGGCTGGTTGGCATCTGAGCAGGAACAAGATGCTCTTCTTTAGTGGCGCTTTG 334
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGGCAATGGCGGGTTGGCATCTGAGCAGGAACAAGATGCTCTTCTTTAGTGGCGATGTG 60
Query 335 TTTATTTCTCTCGCGGTTTGTGTTCATCTCACGCCTTATTTCCCTTCCGTTTCCGACATC 394
|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TTTACTTCTCTCGCTGTTTGTGTTCATCTCACACCTTATTTCCCTTCCGTTTCCGACATG 120
Query 395 GTTGCCTCTGTTTCCTCTGTTGTTGTCTACGATCATCGTATCTCTTGTATCAACGAGGTT 454
|| ||||||||||| ||||||||| ||||| ||||| ||||||| ||||| ||||| ||
Sbjct 121 GTAGCCTCTGTTTCGTCTGTTGTTATCTACTATCATTGTATCTCCTGTATTAACGAAGTG 180
Query 455 AATCAGATTGTCTGGGATGTTAAACCGGTACCGAATCCGGAGTCTGTTCGTAGGAACAAT 514
||||||||||||||| |||||| ||||||||||||||||| | ||||| |||||| |||
Sbjct 181 GATCAGATTGTCTGGGGTGTTAAGCCGGTACCGAATCCGGAATTTGTTCATAGGAATAAT 240
Query 515 GGCTCAACAAAGCTTGATTATTTCGTGAAGAACTGGGATTGGATGAAAT 563
||||| ||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 241 GGCTC--CAA-GCTTAATTATTTCGAGAAGAACTGGGATTGGATGAAAT 286
> Ahg904293 jgi|Araly1|904293|Al_scaffold_0003_1421
Length=288
Score = 375 bits (203), Expect = 4e-103
Identities = 261/289 (90%), Gaps = 3/289 (1%)
Strand=Plus/Plus
Query 275 ATGGCAATGGCTGGTTGGCATCTGAGCAGGAACAAGATGCTCTTCTTTAGTGGCGCTTTG 334
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGGCAATGGCGGGTTGGCATCTGAGCAGGAACAAGATGCTCTTCTTTAGTGGCGATGTG 60
Query 335 TTTATTTCTCTCGCGGTTTGTGTTCATCTCACGCCTTATTTCCCTTCCGTTTCCGACATC 394
|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TTTACTTCTCTCGCTGTTTGTGTTCATCTCACACCTTATTTCCCTTCCGTTTCCGACATG 120
Query 395 GTTGCCTCTGTTTCCTCTGTTGTTGTCTACGATCATCGTATCTCTTGTATCAACGAGGTT 454
|| ||||||||||| ||||||||| ||||| ||||| ||||||| ||||| ||||| ||
Sbjct 121 GTAGCCTCTGTTTCGTCTGTTGTTATCTACTATCATTGTATCTCCTGTATTAACGAAGTG 180
Query 455 AATCAGATTGTCTGGGATGTTAAACCGGTACCGAATCCGGAGTCTGTTCGTAGGAACAAT 514
||||||||||||||| |||||| ||||||||||||||||| | ||||| |||||| |||
Sbjct 181 GATCAGATTGTCTGGGGTGTTAAGCCGGTACCGAATCCGGAATTTGTTCATAGGAATAAT 240
Query 515 GGCTCAACAAAGCTTGATTATTTCGTGAAGAACTGGGATTGGATGAAAT 563
||||| ||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 241 GGCTC--CAA-GCTTAATTATTTCGAGAAGAACTGGGATTGGATGAAAT 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5