BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03220.1
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477568 jgi|Araly1|477568|fgenesh2_kg.3__269__AT3G03220.1 1783 0.0
> Ahg477568 jgi|Araly1|477568|fgenesh2_kg.3__269__AT3G03220.1
Length=1113
Score = 1783 bits (965), Expect = 0.0
Identities = 1071/1120 (96%), Gaps = 16/1120 (1%)
Strand=Plus/Plus
Query 24 atcaaaatctctaaaatcaaaaatTCGCA--TT-T-TCTC----TCTCGCCGGAGAGATG 75
|||||||||||||||||| |||||| ||| || | |||| ||||||||||||||||
Sbjct 1 ATCAAAATCTCTAAAATC-AAAATTGGCATTTTCTCTCTCGAATTCTCGCCGGAGAGATG 59
Query 76 CAACGGTTTCTTCTACCTTTACTCTTCCTTGCACTATCGCCGCCGGCGATTTGTCATTAC 135
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 60 CAACGGTTTCTTCTACCTTTACTCTTCCTTACACTATCGCCGCCGGCGATTTCTCATTAC 119
Query 136 TCTTCCTCAACCTCTTCACCTTCTTCGTCCTCCGTTTCTTCCGACGCCTCAGAATGGCGT 195
||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct 120 TCTTCCTCAACCTCTTCTCCTTCTTCTTCATCCGTCTCTTCCGACGCCTCAGAATGGCGT 179
Query 196 CCAGCTCGAGCCACCTACTACGCCGCTACGAATCCTCGAGACGCGGTGGGCGGTGCGTGT 255
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 180 CCAGCTCGAGCCACCTACTACGCCGCTTCTAATCCTCGAGACGCGGTGGGCGGTGCGTGT 239
Query 256 GGATACGGAGATCTCGTCAAATCTGGGTACGGTATGGCTACTGTTGGTCTAAGCGAGACT 315
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 GGATACGGAGATCTCGTCAAATCTGGGTACGGTATGGCTACGGTTGGTCTAAGCGAGACT 299
Query 316 CTGTTTGAGCGTGGTCAGATCTGTGGTGCTTGTTTCGAGCTCAGATGTGTTGATGATCTC 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTGTTTGAGCGTGGTCAGATCTGTGGTGCTTGTTTCGAGCTCAGATGTGTTGATGATCTC 359
Query 376 CGTTGGTGTATCCCTGGAACTTCAATTATACTCACCGCTACGAATTTCTGTGCTCCTAAT 435
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 360 CGTTGGTGTATCCCTGGAACTTCAATTATTGTCACTGCTACGAATTTCTGTGCTCCTAAT 419
Query 436 TACGGATTTGATCCCGACGGTGGTGGTCATTGTAATCCACCTAACAAACATTTCGTGCTT 495
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 TACGGATTTGATCCAGATGGTGGTGGTCATTGTAATCCACCGAACAAACATTTCGTGCTT 479
Query 496 CCGATCGAAGCGTTTGAGAAGATCGCTATTTGGAAAGCTGGGAACATGCCGGTGCAGTAT 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCGATCGAAGCGTTTGAGAAGATCGCTATTTGGAAAGCTGGGAACATGCCGGTGCAGTAT 539
Query 556 CGAAGGATCAACTGTAGAAAGGAAGGGAGCATGCGGTTTACAGTCGATGGTGGAGGCATT 615
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGAAGGATCAACTGTAGAAGGGAAGGGAGCATGCGGTTTACAGTCGATGGTGGAGGCATT 599
Query 616 TTCATTTCGGTTTTGATCACCAATGTTGCAGGGTCCGGTGATATAGCTGCTGTGAAGATC 675
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 TTCATTTCGGTTCTGATCACCAATGTTGCAGGGTCCGGTGATGTAGCTGCTGTGAAGATC 659
Query 676 AAAGGGTCGAGAACCGGGTGGTTACCTATGGGTCGTAATTGGGGACAAAATTGGCATATT 735
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 AAAGGATCGAGAACCGGGTGGTTACCTATGGGTCGTAATTGGGGACAGAATTGGCATATC 719
Query 736 AATGCTGATCTCAGGAACCAAGCTCTCTCATTTGAAGTAACTTCTAGTGACAGGTCAACC 795
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AATGCTGATCTCAAGAACCAAGCTCTCTCATTTGAAGTAACTTCTAGTGACAGGTCAACC 779
Query 796 GTGACATCTTACAATGTCTCCCCGAAAAACTGGAATTATGGACAGACCTTCGAAGGGAAA 855
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 780 GTGACATCTTACAACGTCTCCCCTAGAAACTGGAATTATGGACAGACCTTCGAAGGGAAA 839
Query 856 CAATTCGAGACTCCGTGAGACAGAGACGGACACATTGAGATACAATCCCATGATTCtttt 915
||||||||||||||||||||||||||||| |||||||||| || ||||||||||||
Sbjct 840 CAATTCGAGACTCCGTGAGACAGAGACGGGTGCATTGAGATA---TCTCATGATTCTTTT 896
Query 916 tttCCGGGTCAGAATTTTTTGATGGCAAGTATATCGATCTTGGTCTAAGGTTATCTTTAG 975
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 897 TT-CCGGGTCAGAATTTTTTGATGGCAAGCATATCGATCTTGGTCTAAGGTTATCTTTAG 955
Query 976 GGTT-GAAAAGGAAAGAACTTGGGTCAGACTTTTGCATTTCATAGTTCTCTCTCTCCCAC 1034
|||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GGTTAGAAA-GGAATGAACTTGGGTCAGACTTTTGCATTTCATAGTTCTCTCTCTCCCAC 1014
Query 1035 GCATAGGTACAAAAACTCACCAATGTACTAAGAACAGTGATCACACAAACATCACTATTG 1094
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1015 GCATAGGTACAAAAA-TCACCAATGTACTAAGAACAGTGATTACACAAACATCACTATTG 1073
Query 1095 TATCTATTTGTTTACATTACTAAGGAGCGAAAGCTTCCTT 1134
||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TATCTATTTGTTTACATTACTAAGGAGCGAAAGCTTCCTT 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43803231633
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5