BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03230.1
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477569 jgi|Araly1|477569|fgenesh2_kg.3__270__AT3G03230.1 1574 0.0
Ahg477570 jgi|Araly1|477570|fgenesh2_kg.3__271__AT3G03240.1 972 0.0
> Ahg477569 jgi|Araly1|477569|fgenesh2_kg.3__270__AT3G03230.1
Length=1064
Score = 1574 bits (852), Expect = 0.0
Identities = 950/998 (95%), Gaps = 4/998 (0%)
Strand=Plus/Plus
Query 1 ATGGTGCTTCTACTTGTGATTGTGGGATTAATAAGCTATTATGTCTACAAGTCCATAACA 60
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| |
Sbjct 1 ATGGTGCTTTTACTTGTGATTGTGGGGCTGATAAGCTATTATGTCTACAAGTCCATAATA 60
Query 61 CCGCCGCCACCGATTCCACTGCCGGAAAATGTTTCCGAGATATCTCCAAGAATCAAGCTC 120
||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGCCACCACCGATCCCATTGCCGGAAAATGTTTCCGAGATATCTCCAAGAATCAAGCTT 120
Query 121 AATGATGGAAGGCATTTAGCGTACAAGGAATTAGGGTTTCCAAAGGACAAAGCCAAAAAC 180
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AATGATGGGAGGCATTTAGCGTACAAAGAATTAGGGTTTCCAAAGGACAAAGCCAAAAAC 180
Query 181 AAAATAATAATCGTCCACGGAAATGGAAATTCCAAAGACGTCGATTTATACATCACACAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAATAATAATCGTCCACGGAAATGGAAATTCCAAAGACGTCGATTTATACATCACACAG 240
Query 241 GAAATGATTGATGAATTCAAGATATACTTTTTGTTCTTCGATAGAGCTGGTTATGGAGAA 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAATGATTGACGAATTCAAGATATACTTTTTGTTCTTCGATAGAGCTGGTTATGGAGAA 300
Query 301 AGCGATCCTAATCCAACACGAACGCTGAAAACAGATACATACGATATCGAAGAACTTGCT 360
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 301 AGCGATCCTAATCCAACACGAACGCTGAGAACTGATACATACGATATCGAAGAACTTGCT 360
Query 361 GACAAATTGCAAGTCGGTCCAAAGTTCCACGTTATAGGCATGTCACTTGGAGCTTACCCT 420
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GACAAATTGCAAATCGGTCCAAAGTTCCACGTTATAGGCATGTCACTTGGAGCTTACCCA 420
Query 421 GTTTACGGTTGCCTCAAATACATTCCTAATAGGCTCAGTGGAGCTTCGTTGGTTGTTCCG 480
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 421 GTTTACGGTTGCCTCAAATACATTCCTCATAGGCTTAGTGGAGCTTCGTTGGTGGTTCCG 480
Query 481 TTAGTGAATTTTTGGTGGAGCCGTGTGCCTCAAAACTTATTGAATGCAGCGATGAAGAAA 540
||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 TTAATAAATTTTTGGTGGAGCCGTGTGCCTCAAAACTTATTGAATGCAGCAATGAAGAAA 540
Query 541 TTGCCAATTGGATTTCAATTGACACTTCGAGTCGCACACTACTCTCCATGGTTGTTATAT 600
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 TTGCCAATTGGATTTCAGTTGACACTTCGAGTTGCACACTACTCTCCATGGTTGTTATAT 600
Query 601 TGGTGGATGACTCAGAAATGGTTCCCGAATAGTCGAAATCCCAAAGATACTATGACCGAG 660
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 601 TGGTGGATGACTCAGAAATGGTTCCCAAATAGTCGAAATCCCAAAGATACAATGACCGAG 660
Query 661 CGCGACCTAGAACTCGCGGAAAAGCATACCAAACACTCTTATATCAAGGAGTCTGCTTTA 720
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 661 CGCGACCTAGAACTCGCGGAAAAGCATACAAAACACTCCTATATCAAAGAGTCTGCTTTA 720
Query 721 CGACAAGGTGGAT-ATGTGACCACACAACAAGACATCATAGCGGGTTACGGGAATTGGGA 779
|||||||||| || |||||| |||||||| ||||||||| || ||||| |||||||||||
Sbjct 721 CGACAAGGTG-ATTATGTGAGCACACAACGAGACATCATTGCAGGTTATGGGAATTGGGA 779
Query 780 ATTTGATCCAACCGAATTGAAG-AATCCGTTTTCGGATAGTAACAAAGGGTCGGTTCATA 838
|||||||||||| ||||||| | |||||||||| ||||||||| ||||||||||||||||
Sbjct 780 ATTTGATCCAACGGAATTGA-GCAATCCGTTTTTGGATAGTAAGAAAGGGTCGGTTCATA 838
Query 839 TGTGGTGTGCACTCGAAGACAAACAAATTTCACGCGATGTTTTACTCTATATATGCGATA 898
|||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||
Sbjct 839 TGTGGTGTGCACTCGAAGACAAACAAATTTCACGAGATGTTTTAATTTATATATGTGATA 898
Query 899 AACTGCCATGGATAAAGCTCCATGAGGTCCCTGATGGTGGACATTATATTATCCATGAGA 958
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 AGCTGCCATGGATAAAGCTCCATGAGGTCCCTGATGGTGGACATTACATTATCCATGAGA 958
Query 959 AGCGGCATTTTGAAGCCATTATCAAAGCCGCTTGTAGT 996
|||||||||| |||||||||||||||||||||||||||
Sbjct 959 AGCGGCATTTCGAAGCCATTATCAAAGCCGCTTGTAGT 996
Score = 99.0 bits (53), Expect = 6e-20
Identities = 64/69 (93%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 1023 aaaaaaaCTCTAAAAGATTTGTATCTAAAATCAGTTTAAGAAAAATTATGGCTATGTAAG 1082
|||||||||||| ||||||||||| | |||||||||| || |||||||||||||||||||
Sbjct 997 AAAAAAACTCTATAAGATTTGTATATGAAATCAGTTTGAG-AAAATTATGGCTATGTAAG 1055
Query 1083 TTTCATGTG 1091
|||||||||
Sbjct 1056 TTTCATGTG 1064
> Ahg477570 jgi|Araly1|477570|fgenesh2_kg.3__271__AT3G03240.1
Length=1132
Score = 972 bits (526), Expect = 0.0
Identities = 855/1012 (84%), Gaps = 29/1012 (3%)
Strand=Plus/Plus
Query 1 ATGGTGCTTCTACTTGTGATTGTGGGATTAATAAG-CTATTATGTCTACAAGTCCATAAC 59
||| || ||||| ||| | ||| || ||||| || |||||||||||||||||||||||
Sbjct 116 ATGTTGTTTCTAGTTGCGGCTGTCGGTTTAAT-AGCCTATTATGTCTACAAGTCCATAAA 174
Query 60 ACCGCCGCCACCGATTCCACTGCCGGAAAATGTTTCCGAGATATCTCCAAGAATCAAGCT 119
||||||||| || |||||| ||||||| |||||||| |||||||||||||||||||| ||
Sbjct 175 ACCGCCGCCGCCAATTCCATTGCCGGAGAATGTTTCTGAGATATCTCCAAGAATCAAACT 234
Query 120 CAATGATGGAAGGCATTTAGCGTACAAG-GAATTAGGGTTTCCAAAGGACAAAGCCAAAA 178
||| ||||| || ||||||| ||| || ||||||||||||||||| |||||||||||||
Sbjct 235 CAACGATGGCAGATATTTAGCCTAC-AGAGAATTAGGGTTTCCAAAAGACAAAGCCAAAA 293
Query 179 ACAAAATAAT-AATCGTCCACGGAAAT-GGAAATTCCAAAG--ACGTCGATTTATACATC 234
| || || || | || |||| || | | || | |||| ||| | || |||||| | |||
Sbjct 294 ATAAGATTATCATTC-TCCATGG-ATTCGGGAGTTCC-AAGTTA-GTGGATTTAAAAATC 349
Query 235 ACACAGGAAATGATTGATGAATTCAAGATATACTTTTTGTTCTTCGATAGAGCTGGTTAT 294
|||||||||||| | || |||||| |||||||||| ||| |||| |||||||||||||||
Sbjct 350 ACACAGGAAATGGTCGACGAATTCGAGATATACTTCTTGCTCTTTGATAGAGCTGGTTAT 409
Query 295 GGAGAAAGCGATCCTAATCCAACACGAACGCTGAAAACAGATACATACGATATCGAAGAA 354
||||||||||||||| ||||| ||||||| || |||||||||||||| ||||||||||||
Sbjct 410 GGAGAAAGCGATCCTCATCCATCACGAACACTAAAAACAGATACATATGATATCGAAGAA 469
Query 355 CTTGCTGACAAATTGCAAGTCGGTCCAAAGTTCCACGT-TATAGGCATGTCACTTGGAGC 413
|||||||| ||||||||| | |||||||||||||| || | |||| |||||||| || ||
Sbjct 470 CTTGCTGATAAATTGCAAATTGGTCCAAAGTTCCATGTCT-TAGGAATGTCACTCGGGGC 528
Query 414 TTACCCTGTTTACGGTTGCCTCAAATACATTCCTAATAGGCTCAGTGGAGCTTCGTTGGT 473
||| || |||||||| || ||||| ||||||||| |||| | |||||||| |||||||
Sbjct 529 TTATCCAGTTTACGGCTGTCTCAAGTACATTCCTCATAGATTAAGTGGAGCAACGTTGGT 588
Query 474 TGTTCCGTTAGTGAATTTTTGGTGGAGCCGTGTGCCTCAAAACTTATTGAATGCAGCGAT 533
||||||||| |||||||||||||||| ||| |||||| |||||| | || | ||||| |
Sbjct 589 GGTTCCGTTACTGAATTTTTGGTGGAGTCGTCTGCCTCTAAACTTGTCGATTTCAGCGTT 648
Query 534 GAAGAAATTGCCAATTGGATTTCAATTGACACTTCGAGTCGCACACTACTCTCCATGGTT 593
||||||||||||||| | ||| | ||||||| ||||||||||||||| |||||||||
Sbjct 649 CAAGAAATTGCCAATTCAAAATCAGTGGACACTTGGAGTCGCACACTACTTTCCATGGTT 708
Query 594 GTTATATTGGTGGATGACTCAGAAATGGTTC-CCGAAT--AGTC-GAAATCCCAAAGATA 649
|||||||||||||||||||||||||||||| || || |||| ||| ||| | ||| |
Sbjct 709 ATTATATTGGTGGATGACTCAGAAATGGTTCTCCCCATTTAGTCAGAA-TCCTAGAGAAA 767
Query 650 CTATGACCGAGCGCGACCTAGAACTCGCGGAAAAGCATACCAAACACTCTTATATCAAGG 709
|||||||||||||||| ||||||| ||||| |||||||| |||||||| || |||||||
Sbjct 768 CTATGACCGAGCGCGATATAGAACTTGCGGATAAGCATACAAAACACTCATACATCAAGG 827
Query 710 AGTCTGCTTTACGACAAGGTGGATATGTGACCACACAACAAGACATCATAGCGGGTTACG 769
| || || |||||||||||| |||||||| || |||| ||||||||| |||||||||
Sbjct 828 AATCCGCACTACGACAAGGTGAATATGTGAGCATGCAACGAGACATCATTGCGGGTTACC 887
Query 770 GGAATTGGGAATTTGATCCAACCGAATTGAAG-AATCCGTTTTCGGAT-AGTAACAAAGG 827
||||||||| ||||||||||||||| ||| | ||||| ||||| ||| | |||||||||
Sbjct 888 AGAATTGGGAGTTTGATCCAACCGAACTGA-GCAATCCATTTTCAGATGA-TAACAAAGG 945
Query 828 GTCGGTTCATATGTGGTGTGCACTCGAAGACAAACAAATTTCACGCGATGTTTTACTCTA 887
||| ||||| || ||||||||||| ||||||||||||||||| | || |||||||||||
Sbjct 946 GTCAGTTCACATTTGGTGTGCACTTGAAGACAAACAAATTTCGCATGAAGTTTTACTCTA 1005
Query 888 -TATATGCGATAAACTGCCATGGATAAAGCTCCATGAGGTCCCTGATGG-TGGACAT-TA 944
| |||| ||||| || |||||||||| ||| ||||| |||||||| || ||||||| |
Sbjct 1006 CT-TATGTGATAAGCTTCCATGGATAACGCTTCATGAAGTCCCTGA-GGCTGGACATCTC 1063
Query 945 TATTATCCATGAGAAGCGGCATTTTGAAGCCATTATCAAAGCCGCTTGTAGT 996
|||||||||||||||| ||||||||||| |||||| |||||||||||||||
Sbjct 1064 -ATTATCCATGAGAAGCAGCATTTTGAAGACATTATTAAAGCCGCTTGTAGT 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639029522
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5