BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03230.1 Length=1091 Score E Sequences producing significant alignments: (Bits) Value Ahg477569 jgi|Araly1|477569|fgenesh2_kg.3__270__AT3G03230.1 1574 0.0 Ahg477570 jgi|Araly1|477570|fgenesh2_kg.3__271__AT3G03240.1 972 0.0 > Ahg477569 jgi|Araly1|477569|fgenesh2_kg.3__270__AT3G03230.1 Length=1064 Score = 1574 bits (852), Expect = 0.0 Identities = 950/998 (95%), Gaps = 4/998 (0%) Strand=Plus/Plus Query 1 ATGGTGCTTCTACTTGTGATTGTGGGATTAATAAGCTATTATGTCTACAAGTCCATAACA 60 ||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| | Sbjct 1 ATGGTGCTTTTACTTGTGATTGTGGGGCTGATAAGCTATTATGTCTACAAGTCCATAATA 60 Query 61 CCGCCGCCACCGATTCCACTGCCGGAAAATGTTTCCGAGATATCTCCAAGAATCAAGCTC 120 ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCGCCACCACCGATCCCATTGCCGGAAAATGTTTCCGAGATATCTCCAAGAATCAAGCTT 120 Query 121 AATGATGGAAGGCATTTAGCGTACAAGGAATTAGGGTTTCCAAAGGACAAAGCCAAAAAC 180 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 121 AATGATGGGAGGCATTTAGCGTACAAAGAATTAGGGTTTCCAAAGGACAAAGCCAAAAAC 180 Query 181 AAAATAATAATCGTCCACGGAAATGGAAATTCCAAAGACGTCGATTTATACATCACACAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAAATAATAATCGTCCACGGAAATGGAAATTCCAAAGACGTCGATTTATACATCACACAG 240 Query 241 GAAATGATTGATGAATTCAAGATATACTTTTTGTTCTTCGATAGAGCTGGTTATGGAGAA 300 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAAATGATTGACGAATTCAAGATATACTTTTTGTTCTTCGATAGAGCTGGTTATGGAGAA 300 Query 301 AGCGATCCTAATCCAACACGAACGCTGAAAACAGATACATACGATATCGAAGAACTTGCT 360 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 301 AGCGATCCTAATCCAACACGAACGCTGAGAACTGATACATACGATATCGAAGAACTTGCT 360 Query 361 GACAAATTGCAAGTCGGTCCAAAGTTCCACGTTATAGGCATGTCACTTGGAGCTTACCCT 420 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GACAAATTGCAAATCGGTCCAAAGTTCCACGTTATAGGCATGTCACTTGGAGCTTACCCA 420 Query 421 GTTTACGGTTGCCTCAAATACATTCCTAATAGGCTCAGTGGAGCTTCGTTGGTTGTTCCG 480 ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| Sbjct 421 GTTTACGGTTGCCTCAAATACATTCCTCATAGGCTTAGTGGAGCTTCGTTGGTGGTTCCG 480 Query 481 TTAGTGAATTTTTGGTGGAGCCGTGTGCCTCAAAACTTATTGAATGCAGCGATGAAGAAA 540 ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 481 TTAATAAATTTTTGGTGGAGCCGTGTGCCTCAAAACTTATTGAATGCAGCAATGAAGAAA 540 Query 541 TTGCCAATTGGATTTCAATTGACACTTCGAGTCGCACACTACTCTCCATGGTTGTTATAT 600 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 541 TTGCCAATTGGATTTCAGTTGACACTTCGAGTTGCACACTACTCTCCATGGTTGTTATAT 600 Query 601 TGGTGGATGACTCAGAAATGGTTCCCGAATAGTCGAAATCCCAAAGATACTATGACCGAG 660 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 601 TGGTGGATGACTCAGAAATGGTTCCCAAATAGTCGAAATCCCAAAGATACAATGACCGAG 660 Query 661 CGCGACCTAGAACTCGCGGAAAAGCATACCAAACACTCTTATATCAAGGAGTCTGCTTTA 720 ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| Sbjct 661 CGCGACCTAGAACTCGCGGAAAAGCATACAAAACACTCCTATATCAAAGAGTCTGCTTTA 720 Query 721 CGACAAGGTGGAT-ATGTGACCACACAACAAGACATCATAGCGGGTTACGGGAATTGGGA 779 |||||||||| || |||||| |||||||| ||||||||| || ||||| ||||||||||| Sbjct 721 CGACAAGGTG-ATTATGTGAGCACACAACGAGACATCATTGCAGGTTATGGGAATTGGGA 779 Query 780 ATTTGATCCAACCGAATTGAAG-AATCCGTTTTCGGATAGTAACAAAGGGTCGGTTCATA 838 |||||||||||| ||||||| | |||||||||| ||||||||| |||||||||||||||| Sbjct 780 ATTTGATCCAACGGAATTGA-GCAATCCGTTTTTGGATAGTAAGAAAGGGTCGGTTCATA 838 Query 839 TGTGGTGTGCACTCGAAGACAAACAAATTTCACGCGATGTTTTACTCTATATATGCGATA 898 |||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |||| Sbjct 839 TGTGGTGTGCACTCGAAGACAAACAAATTTCACGAGATGTTTTAATTTATATATGTGATA 898 Query 899 AACTGCCATGGATAAAGCTCCATGAGGTCCCTGATGGTGGACATTATATTATCCATGAGA 958 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 899 AGCTGCCATGGATAAAGCTCCATGAGGTCCCTGATGGTGGACATTACATTATCCATGAGA 958 Query 959 AGCGGCATTTTGAAGCCATTATCAAAGCCGCTTGTAGT 996 |||||||||| ||||||||||||||||||||||||||| Sbjct 959 AGCGGCATTTCGAAGCCATTATCAAAGCCGCTTGTAGT 996 Score = 99.0 bits (53), Expect = 6e-20 Identities = 64/69 (93%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 1023 aaaaaaaCTCTAAAAGATTTGTATCTAAAATCAGTTTAAGAAAAATTATGGCTATGTAAG 1082 |||||||||||| ||||||||||| | |||||||||| || ||||||||||||||||||| Sbjct 997 AAAAAAACTCTATAAGATTTGTATATGAAATCAGTTTGAG-AAAATTATGGCTATGTAAG 1055 Query 1083 TTTCATGTG 1091 ||||||||| Sbjct 1056 TTTCATGTG 1064 > Ahg477570 jgi|Araly1|477570|fgenesh2_kg.3__271__AT3G03240.1 Length=1132 Score = 972 bits (526), Expect = 0.0 Identities = 855/1012 (84%), Gaps = 29/1012 (3%) Strand=Plus/Plus Query 1 ATGGTGCTTCTACTTGTGATTGTGGGATTAATAAG-CTATTATGTCTACAAGTCCATAAC 59 ||| || ||||| ||| | ||| || ||||| || ||||||||||||||||||||||| Sbjct 116 ATGTTGTTTCTAGTTGCGGCTGTCGGTTTAAT-AGCCTATTATGTCTACAAGTCCATAAA 174 Query 60 ACCGCCGCCACCGATTCCACTGCCGGAAAATGTTTCCGAGATATCTCCAAGAATCAAGCT 119 ||||||||| || |||||| ||||||| |||||||| |||||||||||||||||||| || Sbjct 175 ACCGCCGCCGCCAATTCCATTGCCGGAGAATGTTTCTGAGATATCTCCAAGAATCAAACT 234 Query 120 CAATGATGGAAGGCATTTAGCGTACAAG-GAATTAGGGTTTCCAAAGGACAAAGCCAAAA 178 ||| ||||| || ||||||| ||| || ||||||||||||||||| ||||||||||||| Sbjct 235 CAACGATGGCAGATATTTAGCCTAC-AGAGAATTAGGGTTTCCAAAAGACAAAGCCAAAA 293 Query 179 ACAAAATAAT-AATCGTCCACGGAAAT-GGAAATTCCAAAG--ACGTCGATTTATACATC 234 | || || || | || |||| || | | || | |||| ||| | || |||||| | ||| Sbjct 294 ATAAGATTATCATTC-TCCATGG-ATTCGGGAGTTCC-AAGTTA-GTGGATTTAAAAATC 349 Query 235 ACACAGGAAATGATTGATGAATTCAAGATATACTTTTTGTTCTTCGATAGAGCTGGTTAT 294 |||||||||||| | || |||||| |||||||||| ||| |||| ||||||||||||||| Sbjct 350 ACACAGGAAATGGTCGACGAATTCGAGATATACTTCTTGCTCTTTGATAGAGCTGGTTAT 409 Query 295 GGAGAAAGCGATCCTAATCCAACACGAACGCTGAAAACAGATACATACGATATCGAAGAA 354 ||||||||||||||| ||||| ||||||| || |||||||||||||| |||||||||||| Sbjct 410 GGAGAAAGCGATCCTCATCCATCACGAACACTAAAAACAGATACATATGATATCGAAGAA 469 Query 355 CTTGCTGACAAATTGCAAGTCGGTCCAAAGTTCCACGT-TATAGGCATGTCACTTGGAGC 413 |||||||| ||||||||| | |||||||||||||| || | |||| |||||||| || || Sbjct 470 CTTGCTGATAAATTGCAAATTGGTCCAAAGTTCCATGTCT-TAGGAATGTCACTCGGGGC 528 Query 414 TTACCCTGTTTACGGTTGCCTCAAATACATTCCTAATAGGCTCAGTGGAGCTTCGTTGGT 473 ||| || |||||||| || ||||| ||||||||| |||| | |||||||| ||||||| Sbjct 529 TTATCCAGTTTACGGCTGTCTCAAGTACATTCCTCATAGATTAAGTGGAGCAACGTTGGT 588 Query 474 TGTTCCGTTAGTGAATTTTTGGTGGAGCCGTGTGCCTCAAAACTTATTGAATGCAGCGAT 533 ||||||||| |||||||||||||||| ||| |||||| |||||| | || | ||||| | Sbjct 589 GGTTCCGTTACTGAATTTTTGGTGGAGTCGTCTGCCTCTAAACTTGTCGATTTCAGCGTT 648 Query 534 GAAGAAATTGCCAATTGGATTTCAATTGACACTTCGAGTCGCACACTACTCTCCATGGTT 593 ||||||||||||||| | ||| | ||||||| ||||||||||||||| ||||||||| Sbjct 649 CAAGAAATTGCCAATTCAAAATCAGTGGACACTTGGAGTCGCACACTACTTTCCATGGTT 708 Query 594 GTTATATTGGTGGATGACTCAGAAATGGTTC-CCGAAT--AGTC-GAAATCCCAAAGATA 649 |||||||||||||||||||||||||||||| || || |||| ||| ||| | ||| | Sbjct 709 ATTATATTGGTGGATGACTCAGAAATGGTTCTCCCCATTTAGTCAGAA-TCCTAGAGAAA 767 Query 650 CTATGACCGAGCGCGACCTAGAACTCGCGGAAAAGCATACCAAACACTCTTATATCAAGG 709 |||||||||||||||| ||||||| ||||| |||||||| |||||||| || ||||||| Sbjct 768 CTATGACCGAGCGCGATATAGAACTTGCGGATAAGCATACAAAACACTCATACATCAAGG 827 Query 710 AGTCTGCTTTACGACAAGGTGGATATGTGACCACACAACAAGACATCATAGCGGGTTACG 769 | || || |||||||||||| |||||||| || |||| ||||||||| ||||||||| Sbjct 828 AATCCGCACTACGACAAGGTGAATATGTGAGCATGCAACGAGACATCATTGCGGGTTACC 887 Query 770 GGAATTGGGAATTTGATCCAACCGAATTGAAG-AATCCGTTTTCGGAT-AGTAACAAAGG 827 ||||||||| ||||||||||||||| ||| | ||||| ||||| ||| | ||||||||| Sbjct 888 AGAATTGGGAGTTTGATCCAACCGAACTGA-GCAATCCATTTTCAGATGA-TAACAAAGG 945 Query 828 GTCGGTTCATATGTGGTGTGCACTCGAAGACAAACAAATTTCACGCGATGTTTTACTCTA 887 ||| ||||| || ||||||||||| ||||||||||||||||| | || ||||||||||| Sbjct 946 GTCAGTTCACATTTGGTGTGCACTTGAAGACAAACAAATTTCGCATGAAGTTTTACTCTA 1005 Query 888 -TATATGCGATAAACTGCCATGGATAAAGCTCCATGAGGTCCCTGATGG-TGGACAT-TA 944 | |||| ||||| || |||||||||| ||| ||||| |||||||| || ||||||| | Sbjct 1006 CT-TATGTGATAAGCTTCCATGGATAACGCTTCATGAAGTCCCTGA-GGCTGGACATCTC 1063 Query 945 TATTATCCATGAGAAGCGGCATTTTGAAGCCATTATCAAAGCCGCTTGTAGT 996 |||||||||||||||| ||||||||||| |||||| ||||||||||||||| Sbjct 1064 -ATTATCCATGAGAAGCAGCATTTTGAAGACATTATTAAAGCCGCTTGTAGT 1114 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40639029522 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5