BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03240.1
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477570 jgi|Araly1|477570|fgenesh2_kg.3__271__AT3G03240.1 1820 0.0
Ahg477569 jgi|Araly1|477569|fgenesh2_kg.3__270__AT3G03230.1 966 0.0
> Ahg477570 jgi|Araly1|477570|fgenesh2_kg.3__271__AT3G03240.1
Length=1132
Score = 1820 bits (985), Expect = 0.0
Identities = 1087/1136 (96%), Gaps = 8/1136 (1%)
Strand=Plus/Plus
Query 1 CCTCTGTCTTGTCTTTTGGTTAGTATAAGTATTGATAAATTCCTTTGACCAGCAAGATAT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 CCTTTGTCTTGTCTTTTGGTTAGTATAAGTATTGATAAATTCCTTTGACCAGC--GATAT 58
Query 61 CATCACTAAAAGATTTTACATTACCAAGCCATCTC-C-AATATCATCAGGTCA-AGTGAT 117
||||||||||||||||||||||||||||| ||||| | ||||||||||||||| | ||||
Sbjct 59 CATCACTAAAAGATTTTACATTACCAAGCAATCTCTCGAATATCATCAGGTCATA-TGAT 117
Query 118 GTTGTTTCTAACCGCGGCTGTCTGTTTAATATG-CTTTTACGTCTACAAGTCCGTGAAAC 176
|||||||||| ||||||||| |||||||| | || ||| |||||||||||| | ||||
Sbjct 118 GTTGTTTCTAGTTGCGGCTGTCGGTTTAATA-GCCTATTATGTCTACAAGTCCATAAAAC 176
Query 177 CGCCGCCGCCAATTCCATTGCCGGAGAATGTTTCTGAGATATCTCCAAGAATCAAGCTCA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 177 CGCCGCCGCCAATTCCATTGCCGGAGAATGTTTCTGAGATATCTCCAAGAATCAAACTCA 236
Query 237 ACGATGGCAGATATTTAGCTTACAAAGAATTAGGGTTTCCTAAAGACAAAGCCAAAAATA 296
||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct 237 ACGATGGCAGATATTTAGCCTACAGAGAATTAGGGTTTCCAAAAGACAAAGCCAAAAATA 296
Query 297 AGATTATCATTCTCCATGGATTCGGGAGTTCCAAGTTAGTGGATTTAAAAATCACACAGG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGATTATCATTCTCCATGGATTCGGGAGTTCCAAGTTAGTGGATTTAAAAATCACACAGG 356
Query 357 AAATGATCGACGAATTCGAGATATACTTCTTGTTGTTCGATAGAGCTGGTTATGGAGAAA 416
||||| |||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 357 AAATGGTCGACGAATTCGAGATATACTTCTTGCTCTTTGATAGAGCTGGTTATGGAGAAA 416
Query 417 GCGATCCTCATCCATCACGAACACTAAAAACGGATACATATGACATCGAAGAACTTGCTG 476
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 417 GCGATCCTCATCCATCACGAACACTAAAAACAGATACATATGATATCGAAGAACTTGCTG 476
Query 477 ACAAATTGCAAATCGGTCCAAAGTTCCATGTCCTAGGAATGTCACTCGGGGCTTATCCAG 536
| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 477 ATAAATTGCAAATTGGTCCAAAGTTCCATGTCTTAGGAATGTCACTCGGGGCTTATCCAG 536
Query 537 TTTACGGCTGTCTCAAGTACATTCCTCATAGACTAAGTGGAGCAACGTTGGTGGTTCCGA 596
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 TTTACGGCTGTCTCAAGTACATTCCTCATAGATTAAGTGGAGCAACGTTGGTGGTTCCGT 596
Query 597 TACTGAATTTTTGGTGGAGTTGTCTGCCTCTAAACTTGTCGATTTCAGCGTTCAAGAAAT 656
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 597 TACTGAATTTTTGGTGGAGTCGTCTGCCTCTAAACTTGTCGATTTCAGCGTTCAAGAAAT 656
Query 657 TGCCAATTCAAAATCAGTGGACACTTGGAGTCGCACACTACTTTCCATGGTTATTATATT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGCCAATTCAAAATCAGTGGACACTTGGAGTCGCACACTACTTTCCATGGTTATTATATT 716
Query 717 GGTGGATGACTCAGAAATGGTTTTCCCCATTTAGTCAGAATCCTAGAGAAACTATGACCG 776
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 717 GGTGGATGACTCAGAAATGGTTCTCCCCATTTAGTCAGAATCCTAGAGAAACTATGACCG 776
Query 777 AGCGCGATATAGAGCTCGCGGATAAGCATACAAAACACGCATATATTAAGGAATCCGCAC 836
||||||||||||| || ||||||||||||||||||||| |||| || |||||||||||||
Sbjct 777 AGCGCGATATAGAACTTGCGGATAAGCATACAAAACACTCATACATCAAGGAATCCGCAC 836
Query 837 TACGACAAGGTGAATATGTGAGCATGCAACGAGACATCATTGCGGGTTACGAGAATTGGG 896
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 837 TACGACAAGGTGAATATGTGAGCATGCAACGAGACATCATTGCGGGTTACCAGAATTGGG 896
Query 897 AGTTTGATCCAACCGAACTGAGCAATCCATTTTCAGATGATAACAAAGGGTCAGTTCACA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AGTTTGATCCAACCGAACTGAGCAATCCATTTTCAGATGATAACAAAGGGTCAGTTCACA 956
Query 957 TTTGGTGTGCACTCGAAGACAAACAAATTTCGCATGAGGTTTTACTCTACTTATGTGATA 1016
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 957 TTTGGTGTGCACTTGAAGACAAACAAATTTCGCATGAAGTTTTACTCTACTTATGTGATA 1016
Query 1017 AGCTTCCATGGATAAAGCTTCATGAAGTCCCTGATGCTGGACATCTTATTATCCATGAGA 1076
||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1017 AGCTTCCATGGATAACGCTTCATGAAGTCCCTGAGGCTGGACATCTCATTATCCATGAGA 1076
Query 1077 AGCAGCATTTTGAAGACATTATTAAAGCCGCTTGTAGTTGAAGGTTaaaaaaaaaa 1132
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 1077 AGCAGCATTTTGAAGACATTATTAAAGCCGCTTGTAGTTGAATGTGAAAAGAAAAA 1132
> Ahg477569 jgi|Araly1|477569|fgenesh2_kg.3__270__AT3G03230.1
Length=1064
Score = 966 bits (523), Expect = 0.0
Identities = 832/980 (85%), Gaps = 25/980 (3%)
Strand=Plus/Plus
Query 146 ATATGCTTTTACGTCTACAAGTCCGTGAA-ACCGCCGCCGCCAATTCCATTGCCGGAGAA 204
||| ||| ||| |||||||||||| | || |||||| || || || ||||||||||| ||
Sbjct 31 ATAAGCTATTATGTCTACAAGTCCAT-AATACCGCCACCACCGATCCCATTGCCGGAAAA 89
Query 205 TGTTTCTGAGATATCTCCAAGAATCAAGCTCAACGATGGCAGATATTTAGCTTACAAAGA 264
|||||| ||||||||||||||||||||||| || ||||| || ||||||| ||||||||
Sbjct 90 TGTTTCCGAGATATCTCCAAGAATCAAGCTTAATGATGGGAGGCATTTAGCGTACAAAGA 149
Query 265 ATTAGGGTTTCCTAAA-GACAAAGCCAAAAATAAGATTATCATTC-TCCATGG-ATTCGG 321
|||||||||||| ||| |||||||||||||| || || || | || |||| || | | ||
Sbjct 150 ATTAGGGTTTCC-AAAGGACAAAGCCAAAAACAAAATAAT-AATCGTCCACGGAAAT-GG 206
Query 322 GAGTTCC-AAGTTA-GTGGATTTAAAAATCACACAGGAAATGATCGACGAATTCGAGATA 379
| |||| ||| | || |||||| | ||||||||||||||||| ||||||||| |||||
Sbjct 207 AAATTCCAAAG--ACGTCGATTTATACATCACACAGGAAATGATTGACGAATTCAAGATA 264
Query 380 TACTTCTTGTTGTTCGATAGAGCTGGTTATGGAGAAAGCGATCCTCATCCATCACGAACA 439
||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 265 TACTTTTTGTTCTTCGATAGAGCTGGTTATGGAGAAAGCGATCCTAATCCAACACGAACG 324
Query 440 CTAAAAACGGATACATATGACATCGAAGAACTTGCTGACAAATTGCAAATCGGTCCAAAG 499
|| | ||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 325 CTGAGAACTGATACATACGATATCGAAGAACTTGCTGACAAATTGCAAATCGGTCCAAAG 384
Query 500 TTCCATGTCCTAGGAATGTCACTCGGGGCTTATCCAGTTTACGGCTGTCTCAAGTACATT 559
||||| || |||| |||||||| || ||||| ||||||||||| || ||||| ||||||
Sbjct 385 TTCCACGTTATAGGCATGTCACTTGGAGCTTACCCAGTTTACGGTTGCCTCAAATACATT 444
Query 560 CCTCATAGACTAAGTGGAGCAACGTTGGTGGTTCCGATACTGAATTTTTGGTGGAGTTGT 619
|||||||| || |||||||| |||||||||||||| || | |||||||||||||| ||
Sbjct 445 CCTCATAGGCTTAGTGGAGCTTCGTTGGTGGTTCCGTTAATAAATTTTTGGTGGAGCCGT 504
Query 620 CTGCCTCTAAACTTGTCGATTTCAGCGTTCAAGAAATTGCCAATTCAAAATCAGTGGACA 679
|||||| |||||| | || | |||| | ||||||||||||||| | ||||| ||||
Sbjct 505 GTGCCTCAAAACTTATTGAATGCAGCAATGAAGAAATTGCCAATTGGATTTCAGTTGACA 564
Query 680 CTTGGAGTCGCACACTACTTTCCATGGTTATTATATTGGTGGATGACTCAGAAATGGTTT 739
||| |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 565 CTTCGAGTTGCACACTACTCTCCATGGTTGTTATATTGGTGGATGACTCAGAAATGGTT- 623
Query 740 TCCCCATTTAGTCAGAA-TCCTAGAGAAACTATGACCGAGCGCGATATAGAGCTCGCGGA 798
||| | | |||| ||| ||| | ||| || |||||||||||||| |||| ||||||||
Sbjct 624 -CCCAAAT-AGTC-GAAATCCCAAAGATACAATGACCGAGCGCGACCTAGAACTCGCGGA 680
Query 799 TAAGCATACAAAACACGCATATATTAAGGAATCCGCACTACGACAAGGTGAATATGTGAG 858
||||||||||||||| | ||||| || || || || ||||||||||||| ||||||||
Sbjct 681 AAAGCATACAAAACACTCCTATATCAAAGAGTCTGCTTTACGACAAGGTGATTATGTGAG 740
Query 859 CATGCAACGAGACATCATTGCGGGTTACGAGAATTGGGAGTTTGATCCAACCGAACTGAG 918
|| ||||||||||||||||| ||||| | ||||||||| ||||||||||| ||| ||||
Sbjct 741 CACACAACGAGACATCATTGCAGGTTATGGGAATTGGGAATTTGATCCAACGGAATTGAG 800
Query 919 CAATCCATTTTCAGAT-GATAACAAAGGGTCAGTTCACATTTGGTGTGCACTCGAAGACA 977
|||||| |||| ||| | ||| |||||||| ||||| || |||||||||||||||||||
Sbjct 801 CAATCCGTTTTTGGATAG-TAAGAAAGGGTCGGTTCATATGTGGTGTGCACTCGAAGACA 859
Query 978 AACAAATTTCGC-ATGAGGTTTTACTCTACT-TATGTGATAAGCTTCCATGGATAAAGCT 1035
|||||||||| | | || |||||| | || | ||||||||||||| ||||||||||||||
Sbjct 860 AACAAATTTCACGA-GATGTTTTAATTTA-TATATGTGATAAGCTGCCATGGATAAAGCT 917
Query 1036 TCATGAAGTCCCTGATGCTGGACATCTT-ATTATCCATGAGAAGCAGCATTTTGAAGACA 1094
||||| |||||||||| ||||||| | |||||||||||||||| |||||| |||| ||
Sbjct 918 CCATGAGGTCCCTGATGGTGGACAT-TACATTATCCATGAGAAGCGGCATTTCGAAGCCA 976
Query 1095 TTATTAAAGCCGCTTGTAGT 1114
|||| |||||||||||||||
Sbjct 977 TTATCAAAGCCGCTTGTAGT 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5