BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03250.1
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477571 jgi|Araly1|477571|fgenesh2_kg.3__272__AT3G03250.1 2815 0.0
Ahg941238 jgi|Araly1|941238|scaffold_601782.1 1679 0.0
Ahg336820 jgi|Araly1|336820|fgenesh1_pg.C_scaffold_1003385 58.4 2e-07
> Ahg477571 jgi|Araly1|477571|fgenesh2_kg.3__272__AT3G03250.1
Length=1803
Score = 2815 bits (1524), Expect = 0.0
Identities = 1728/1824 (95%), Gaps = 23/1824 (1%)
Strand=Plus/Plus
Query 16 CTCCCTTGGCCTATAAATATTTCTCTGCTTTTAATTTCCAATTTGCTCTGATTCATTCAC 75
||||||| |||||||||||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 1 CTCCCTTCGCCTATAAATATTTCTCTGC-TTTAATTTCCAATTTTCTCT-CTTCATTCAC 58
Query 76 AAATAACAATCCTCTCTTCGtttttgtttttcttttGGATCCAAAGCTCTCTTAAATCTG 135
||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 59 AAAAAACAATCCTCTCTTCG---TT-TTTTTCTTTTGGATCCAAAG--CTCTTAAATCTG 112
Query 136 TAAATCAACAATGGCCGCCACCACTGAGAATCTCCCTCAACTCAAATCCGCCGTCGATGG 195
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 113 -CAATCAACAATGGCCGCCACCACCGAGAATCTCCCTCAACTCAAATCCGCCGTCGATGG 171
Query 196 CCTTACTGAGATGAGTGAGAGTGAGAAGAGCGGATTCATCAGCCTGGTTTCACGTTACCT 255
|||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 172 CCTTGCTGAGATGAGTGAGAATGAGAAGAGCGGATTCATCAGCCTTGTTTCACGTTACCT 231
Query 256 GAGCGGTGAGGCACAACACATTGAGTGGAGTAAGATCCAGACTCCTACCGATGAAATCGT 315
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 232 GAGCGGTGAGGCACAGCACATTGAGTGGAGTAAGATCCAGACACCTACTGATGAAATCGT 291
Query 316 TGTTCCCTACGAGAAAATGAC-CCCTGTCTCCCAAGATGTTGCCGAGACCAAGAATCTGT 374
||||||||||||||||||| | || ||||||||||||||| ||||||||||||||||||
Sbjct 292 TGTTCCCTACGAGAAAATGGCTTCC-GTCTCCCAAGATGTTTCCGAGACCAAGAATCTGT 350
Query 375 TGGACAAACTTGTTGTGTTGAAGCTTAATGGAGGTCTTGGAACAACAATGGGATGCACTG 434
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 351 TGGACAAACTTGTTGTGTTAAAGCTTAATGGAGGTCTTGGGACAACAATGGGATGCACTG 410
Query 435 GCCCGAAGTCCGTTATCGAAGTTCGTGATGGTTTGACATTTCTTGATCTGATTGTTATCC 494
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 411 GCCCCAAGTCGGTTATCGAAGTTCGTGACGGTTTGACATTTCTTGATCTGATTGTTATCC 470
Query 495 AGATTGAGAATCTCAACAACAAGTATGGCTGCAAGGTTCCGTTAGTTCTCATGAACTCGT 554
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 471 AGATTGAGAATCTCAACAACAAGTATGGCTGCAAGGTTCCGTTGGTTCTCATGAACTCAT 530
Query 555 TTAATACACATGATGACACACATAAGATTGTGGAAAAGTACACCAACTCAAATGTTGACA 614
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 531 TTAATACACATGATGACACACAAAAGATTGTGGAAAAGTACACCCACTCAAATGTTGACA 590
Query 615 TTCACACTTTTAACCAGAGCAAATATCCCCGTGTTGTGGCAGATGAGTTTGTGCCATGGC 674
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TTCACACATTTAACCAGAGCAAATATCCCCGTGTTGTGGCAGATGAGTTTGTGCCATGGC 650
Query 675 CCAGCAAGGGAAAGACCGACAAGGAGGGCTGGTATCCTCCCGGTCATGGTGATGTATTCC 734
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 651 CCAGCAAGGGAAAGACCGACAAGGAGGGCTGGTATCCTCCTGGTCATGGTGATGTATTCC 710
Query 735 CAGCCCTCATGAACAGTGGAAAGCTCGATACTTTCTTATCACAGGGTAAGGAATATGTGT 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 711 CAGCCCTCATGAACAGTGGAAAGCTCGATACTTTCTTATCACAGGGTAAGGAATACGTGT 770
Query 795 TTGTTGCCAATTCAGACAACTTGGGTGCCATCGTTGACTTAACAATCCTGAAGCATTTGA 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TTGTTGCCAATTCAGACAACTTGGGTGCCATCGTTGACTTAACAATCCTGAAGCATTTGA 830
Query 855 TCCAGAACAAGAACGAATACTGCATGGAGGTTACACCCAAAACCTTAGCTGATGTAAAGG 914
|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 831 TCCAGAACAAGAACGAGTACTGCATGGAAGTTACGCCCAAAACCTTAGCTGATGTAAAGG 890
Query 915 GGGGAACTCTCATTTCTTATGAAGGCAAAGTCCAGCTTCTGGAGATTGCTCAGGTTCCTG 974
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 891 GAGGAACTCTCATTTCTTATGAAGGCAAAGTCCAGCTTCTGGAGATTGCTCAGGTTCCGG 950
Query 975 ATGAACATGTCAATGAGTTCAAATCAATTGAGAAGTTCAAGATATTCAACACAAACAACC 1034
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 ATGAACATGTCAATGAATTCAAATCAATTGAGAAGTTCAAGATATTCAACACAAACAACT 1010
Query 1035 TATGGGTTAACTTGAAGGCCATCAAAAAGCTTGTGGAAGCTGATGCACTTAAAATGGAGA 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TATGGGTTAACTTGAAGGCCATCAAAAAGCTTGTGGAAGCTGATGCACTTAAAATGGAGA 1070
Query 1095 TCATTCCAAACCCAAAGGAAGTTGATGGAGTCAAAGTTCTTCAACTGGAAACTGCAGCCG 1154
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1071 TCATTCCAAACCCAAAGGAAGTTGATGGAGTCAAAATTCTTCAACTGGAAACTGCAGCTG 1130
Query 1155 GTGCTGCGATAAGGTTCTTTGACAACGCTATCGGTGTTAATGTACCTCGCTCACGGTTCT 1214
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1131 GTGCTGCGATAAGGTTCTTTGACAATGCTATCGGTGTTAATGTACCTCGTTCACGGTTCT 1190
Query 1215 TGCCAGTGAAGGCAAGTTCAGACTTGCTGCTCGTCCAGTCTGATCTCTACACCTTAGTTG 1274
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1191 TGCCAGTGAAGGCAAGCTCAGACTTGCTGCTCGTCCAGTCTGATCTCTACACGTTAGTTG 1250
Query 1275 ATGGCTTTGTCACTCGAAACAAAGCTAGAACTAACCCCTCGAACCCGTCAATTGAATTGG 1334
||||||| || || |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1251 ATGGCTTCGTTACCCGAAACAAAGCTAGAACTAACCCCTCAAACCCATCAATTGAATTGG 1310
Query 1335 GACCCGAGTTCAAGAAGGTGGCTACTTTCTTGAGCCGGTTTAAGTCCATTCCTAGTATAG 1394
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1311 GACCTGAGTTCAAGAAGGTGGCTAATTTCTTGAGCCGGTTTAAGTCCATTCCTAGTATAG 1370
Query 1395 TCGAGCTCGACAGCCTTAAGGTGTCTGGTGATGTCTGGTTTGGCTCTTCCATTGTTCTCA 1454
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1371 TCGAGCTCGACAGCCTTAAGGTGTCTGGGGATGTCTGGTTTGGCTCTTCGGTTGTTCTCA 1430
Query 1455 AGGGCAAGGTGACTGTGGCGGCAAAATCCGGTGTGAAGCTTGAAATTCCGGACAGGGCCG 1514
|||| ||||| |||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 1431 AGGGAAAGGTAACTGTGACTGCAAAATCCGGTGTGAAGCTCGAAATTCCGGACAGGGCCG 1490
Query 1515 TGGTCGAGAACAAGAACATCAATGGTCCAGAAGACCTCTGAATAAAACAAATTCAA-GTC 1573
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1491 TGGTCGACAACAAGAACATCAATGGTCCAGAAGACCTCTGAATAAGACAAATTCAAAGTC 1550
Query 1574 TTCTTCCCTCTCTCATGGAAGACACATCTTGATACTCCTTTAATTGGTGTGAAAAGATCA 1633
||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1551 TTC--CC-TCTCTCGGGGAAGACACATCTTGATACTCTTTTAATTGGTGTGAAAAGATCA 1607
Query 1634 CAAGTGGCACAGCAAAGCAAGTTTATGAAGAAAGAATAAATAATGtttctttttcttttt 1693
|| ||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1608 CA-GTGTCACAGCAAAGCAAGTTTATGAAGAATGAATAAATAATGTTTCTTTTT------ 1660
Query 1694 gcagcttagcaaagtcttttcctctttggactttattttaattttgctctttgAATTTTC 1753
||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1661 GCAGCCTAGCAAAGTCTTTTCTTCTTTGGACTTTATTTTAATTTTGCTCGTTGAATTTTC 1720
Query 1754 CCAAAACATCACATTTATATGTTCGATTATATTTGGGTTCTATCCACAATCATTTTTCTT 1813
| ||||||| ||||||| | |||||||| ||||||||||| |||| |||| ||||| |||
Sbjct 1721 CGAAAACATAACATTTAAAAGTTCGATTGTATTTGGGTTCCATCCGCAATTATTTT-CTT 1779
Query 1814 TTTGATAATCCACTCTTTCTTTCC 1837
||||||||||||||||||||||||
Sbjct 1780 TTTGATAATCCACTCTTTCTTTCC 1803
> Ahg941238 jgi|Araly1|941238|scaffold_601782.1
Length=1453
Score = 1679 bits (909), Expect = 0.0
Identities = 1265/1437 (88%), Gaps = 23/1437 (2%)
Strand=Plus/Plus
Query 137 AAATCAACAATGGCCGCCACCACTGAGAATCTCCCTCAACTCAAATCCGCCGTCGATGGC 196
|||||| | ||||||||| | || ||||| |||||||| ||||||||||||||||||||
Sbjct 13 AAATCATCCATGGCCGCCGCAACGGAGAAGCTCCCTCAGCTCAAATCCGCCGTCGATGGA 72
Query 197 CTTACTGAGATGAGTGAGAGTGAGAAGAGCGGATTCATCAGCCTGGTTTCACGTTACCTG 256
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 73 CTTACTGAGATGAGTGAGAATGAGAAGAGCGGATTCATCAGCCTCGTTTCACGTTACCTC 132
Query 257 AGCGGTGAGGCACAACACATTGAGTGGAGTAAGATCCAGACTCCTACCGATGAAATCGTT 316
|| |||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| |||
Sbjct 133 AGTGGTGAGGCCCAACACATTGAATGGAGTAAGATCCAGACACCTACTGATGAAATTGTT 192
Query 317 GTTCCCTACGAGAAAATGAC-CCCTGTCTCCCAAGATGTTGCCGAGACCAAGA-ATCTGT 374
||||| ||||| |||||| | | ||||| ||||||| |||||||||| | ||||||
Sbjct 193 GTTCCTTACGATAAAATGGCTAAC-GTCTCTCAAGATGCCACCGAGACCAA-ATATCTGT 250
Query 375 TGGACAAACTTGTTGTGTTGAAGCTTAATGGAGGTCTT-GGAACAACAATGGGATGCACT 433
||||||| ||||||||| | ||||||||||||||| || ||||| ||||||||||||||
Sbjct 251 TGGACAAGCTTGTTGTGCTAAAGCTTAATGGAGGT-TTGGGAACGACAATGGGATGCACC 309
Query 434 GGCCCGAAGTCCGTTATCGAAGTTCGTGATGGTTTGACATTTCTTGATCTGATTGTTATC 493
|| || || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 310 GGTCCTAAATCGGTTATCGAAGTTCGTGATGGTTTGACATTTCTTGACCTGATTGTTATC 369
Query 494 CAGATTGAGAATCTCAACAACAAGTATGGCTGCAAGGTTCCGTTAGTTCTCATGAACTCG 553
||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 370 CAGATTGAGAATCTCAACAACAAGTATGGCTGCAAGGTTCCCTTGGTTCTTATGAACTCA 429
Query 554 TTTAATACACATGATGACACACATAAGATTGTGGAAAAGTACACCAACTCAAATGTTGAC 613
|| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 430 TTCAATACACATGATGACACACAAAAGATTGTGGAAAAATACACCAAGTCAAATGTTGAT 489
Query 614 ATTCACACTTTTAACCAGAGCAAATATCCCCGTGTTGTGGCAGATGAGTTTGTGCCATGG 673
|||||||||||||| |||||||| ||||| |||||||| || |||||||||||||| |||
Sbjct 490 ATTCACACTTTTAATCAGAGCAAGTATCCTCGTGTTGTTGCTGATGAGTTTGTGCCGTGG 549
Query 674 CCCAGCAAGGGAAAGACCGACAAGGAGGGCTGGTATCCTCCCGGTCATGGTGATGTATTC 733
|| ||||| |||||||| |||||||| || ||||||||||||||||| ||||||||||||
Sbjct 550 CCAAGCAAAGGAAAGACTGACAAGGATGGATGGTATCCTCCCGGTCACGGTGATGTATTC 609
Query 734 CCAGCCCTCATGAACAGTGGAAAGCTCGATACTTTCTTATCACAGGGTAAGGAATATGTG 793
||| |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct 610 CCATCCCTCATGAACAGTGGAAAGCTCGATGCTTTCTTATCACAGAGTAAGGAGTATGTG 669
Query 794 TTTGTTGCCAATTCAGACAACTTGGGTGCCATCGTTGACTTAACAATCCTGAAGCATTTG 853
|| | ||||| |||||||||||||| || || |||||||||| |||| ||||||| ||
Sbjct 670 TTCATCGCCAACTCAGACAACTTGGGCGCTATTGTTGACTTAAAAATCTTGAAGCACCTG 729
Query 854 ATCCAGAACAAGAACGAATACTGCATGGAGGTTACACCCAAAAC-CTTAGCTGATGTAAA 912
||||||||||| || || || || |||||||||||||||||||| || ||||||||||||
Sbjct 730 ATCCAGAACAAAAATGAGTATTGTATGGAGGTTACACCCAAAACACT-AGCTGATGTAAA 788
Query 913 GGGGGGAACTCTCATTTCTTATGAAGGCAA-AGTCCAGCTTCTGGAGATTGCTCAGGTTC 971
||| ||||||||||| ||||| ||||| || ||| |||||| ||||||||||||||||||
Sbjct 789 GGGAGGAACTCTCATCTCTTACGAAGG-AAGAGTACAGCTTTTGGAGATTGCTCAGGTTC 847
Query 972 CTGATGAACATGTCAATGAGTTCAAATCAATTGAGAAGTTCAAGATATTCAACACAAACA 1031
||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 848 CTGATGAACATGTCAATGAATTCAAATCAATTGAGAAATTCAAGATTTTCAACACAAACA 907
Query 1032 ACCTATGGGTTAACTTGAAGGCCATCAAAAAGCTTGTGGAAGCTGATGCACTTAAAATGG 1091
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 908 ACCTTTGGGTTAACTTGAAAGCTATCAAAAAGCTTGTGGAAGCTGATGCACTTAAAATGG 967
Query 1092 AGATCATTCCAAACCCAAAGGAAGTTGATGGAGTCAAAGTTCTTCAACTGGAAACTGCAG 1151
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 AGATCATCCCAAACCCGAAGGAAGTTGATGGAGTCAAAGTTCTTCAACTGGAAACTGCAG 1027
Query 1152 CCGGTGCTGCGATAAGGTTCTTTGACAACGCTATCGGTGTTAATGTACCTCGCTCACGGT 1211
| |||||||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||| |
Sbjct 1028 CTGGTGCTGCTATAAGGTTTTTTGATAACGCAATCGGTGTGAATGTACCTCGGTCACGAT 1087
Query 1212 TCTTGCCAGTGAAGGCAAGTTCAGACTTGCTGCTCGTCCAGTCTGATCTCTACAC-CTTA 1270
|||||||||||||||||| |||||||||||| || || || || ||||| || || ||
Sbjct 1088 TCTTGCCAGTGAAGGCAACTTCAGACTTGCTTCTTGTTCAATCGGATCTGTATACACTC- 1146
Query 1271 GTTGATGGCTTTGTCACTC-GAAACAAAGCTAGAACTAACCCCTCGAACCC-GTCAATTG 1328
|| ||||||||||||| | |||||||||||||||| |||||| | ||||| | | || |
Sbjct 1147 GTCGATGGCTTTGTCA-TAAGAAACAAAGCTAGAACAAACCCCACAAACCCAG-CGATCG 1204
Query 1329 AATTGGGACCCGAGTTCAAGAAGGTGGCTA-CTTTCTTGAGCCGGTTTAAGTCCATTCCT 1387
||||||||||||| ||||| ||||| || | ||| ||| ||||||||||||||||| ||
Sbjct 1205 AATTGGGACCCGAATTCAAAAAGGTAGCGAGCTTCCTT-AGCCGGTTTAAGTCCATCCCG 1263
Query 1388 AGTATAGTCGAGCTCGACAGCCTTAAGGTGTCTGGTGATGTCTGGTTTGGCTCTTCCATT 1447
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||| | ||
Sbjct 1264 AGTATAGTTGAGCTCGATAGCCTTAAGGTCTCTGGTGATGTCTGGTTTGGCTCAGGCGTT 1323
Query 1448 GTTCTCAAGGGCAAGGTGACTGTGGCGGCAAAATCCGGTG--TGAAGCTTGAAATTCCGG 1505
|||||||||||||| ||| | || |||||| ||||| | | || |||||||| || |
Sbjct 1324 GTTCTCAAGGGCAAAGTGTCAGTAAAGGCAAACTCCGG-GACTAAA-CTTGAAATCCCTG 1381
Query 1506 ACAGGGCCGTGGTCGAGAACAAGAACATCAATGGTCCAGAAGACCTCTGAATAAAAC 1562
||| |||||| ||||||| ||| | ||||| |||||||| || || | || |||||
Sbjct 1382 ACAATGCCGTGCTCGAGAATAAGGATATCAACGGTCCAGAGGATCTGTAAA-AAAAC 1437
> Ahg336820 jgi|Araly1|336820|fgenesh1_pg.C_scaffold_1003385
Length=537
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 949 GCTTCTGGAGATTGCTCAGGTTCCTGATGAACAT 982
|||| |||||||||||||||||||||||||||||
Sbjct 179 GCTTTTGGAGATTGCTCAGGTTCCTGATGAACAT 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72371465500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5