BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G03270.1

Length=719
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927833 jgi|Araly1|927833|scaffold_300290.1                        697    0.0  


> Ahg927833 jgi|Araly1|927833|scaffold_300290.1
Length=565

 Score =  697 bits (377),  Expect = 0.0
 Identities = 401/413 (97%), Gaps = 0/413 (0%)
 Strand=Plus/Plus

Query  33   AGAGAAAAATGGGAAAGGCACGTACGGTGGGAGTGGGAATGGACTATTCTCCGACGAGCA  92
            ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  16   AGAGAGAGATGGGAAAGGCACGTACAGTGGGAGTGGGAATGGACTATTCTCCGACGAGCA  75

Query  93   AATTAGCTCTCCGGTGGGCGGCGGAGAATCTCCTTGAAGACGGCGACACCGTCATCTTGA  152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  76   AATTAGCTCTCCGGTGGGCGGCGGAGAATCTCCTTGAAGACGGCGACACCGTCGTCTTGA  135

Query  153  TTCACGTCCAACCACAAAACGCCGATCATACCCGCAAAATCCTCTTCGAGGAAACCGGTT  212
            | ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct  136  TCCACGTCCAACCGCAAAACGCCGATCATACCCGGAAAATCCTCTTCGAGGACACCGGTT  195

Query  213  CACCGCTAATTCCTTTGGAGGAATTTAGAGAGGTTAATTTGTCTAAACAGTATGGACTTG  272
            |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  196  CACCGCTAGTTCCTTTGGAGGAATTTAGAGAGGTTAATTTGTCTAAACAATATGGACTTG  255

Query  273  CTTACGATCCTGAGGTTCTTGATGTTCTTGATACTCTCTCTAGGGCTAAAAAGGTGAAGG  332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  256  CTTACGATCCTGAGGTTCTTGATGTTCTTGATACTCTCTCTAGGGCTAAAAAGGTGAAGG  315

Query  333  TTGTAGCAAAGGTGTATTGGGGAGATCCAAGGGAGAAACTTTGTGATGCTGTCGAAAATC  392
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  316  TTGTGGCAAAGGTGTATTGGGGAGATCCAAGGGAGAAACTTTGTGATGCTGTCGAAAATC  375

Query  393  TAAAACTCGATTCCATTGTTCTTGGCAGTCGAGGTTTGGGTTCTCTCAAAAGG  445
            | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  376  TTAAACTCGATTCCATTGTTCTTGGCAGTCGAGGTTTGGGTTCTCTCAAAAGG  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26457304398


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5