BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G03272.1

Length=781
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477575 jgi|Araly1|477575|fgenesh2_kg.3__276__AT3G03272.1          490    6e-138


> Ahg477575 jgi|Araly1|477575|fgenesh2_kg.3__276__AT3G03272.1
Length=489

 Score =  490 bits (265),  Expect = 6e-138
 Identities = 366/411 (89%), Gaps = 21/411 (5%)
 Strand=Plus/Plus

Query  243  ATGATGAAACCATTTTCTCTAGTACTCGTTCTTGTCCTCTCATCATCTTTAGCA-----A  297
            |||||||||||| || |||| |||||||  ||| |||||||||||||||| |||     |
Sbjct  1    ATGATGAAACCAATTCCTCTCGTACTCGCCCTTCTCCTCTCATCATCTTTTGCACCTCTA  60

Query  298  G-TGCAACCGCATCCTCCTTATT--C---T-CG----C-C-TCCACTTCCATTTTCGCTC  344
            |  |||||||||| |||||||||  |   | ||    | | |||||||||||||||||||
Sbjct  61   GCCGCAACCGCATTCTCCTTATTCCCGTTTCCGTTCCCGCTTCCACTTCCATTTTCGCTC  120

Query  345  TCTTCCATCTTCGGTGGGATTATCGGTAACAGTGATAATAGCGAGTTAGCTAGGATGTGT  404
             |||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||
Sbjct  121  CCTTCCATCTTCGGTGGAATTATCGGTAACAATGATAATAGCAAGTTAGCTAGGATGTGT  180

Query  405  TTTCCAGACCTAGGAGACGGAGAAGCCTGCGTGGCGGAAATCTTCGGTTCATTCTTTAGT  464
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  
Sbjct  181  TTTCCAGACCTAGGAGACGGAGAAGCCTGTGTGGCGGAAATCTTCGGTTCATTCTTTA-A  239

Query  465  CC-TCAAATTACGATAGGACCAGAATGTTGCAAGGCCATTGTTGAGATCGACGAAGACTG  523
            || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CCGTCAAATCACGATAGGACCAGAATGTTGCAAGGCCATTGTTGAGATCGACGAAGACTG  299

Query  524  TGCTCAAGCCATTTTTAAACCACTCAGCAATTCTTTCTTTAGTAGTTCTGTCAAGCAGTA  583
            | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  300  TACTCAAGCCATTTTCAAACCACTCAGCAATTCTTTCTTTAGTAGTTCTGTTAAGCAGTA  359

Query  584  TTGCACTTACATCAATAGTTGATTGAAttttcttt-aggtttactttagtg  633
            |||||||||||| |||| ||||| ||| ||| ||| |||||||||||||||
Sbjct  360  TTGCACTTACATTAATAATTGATCGAAATTTGTTTTAGGTTTACTTTAGTG  410



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28820925252


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5