BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03280.1
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927835 jgi|Araly1|927835|scaffold_300292.1 778 0.0
> Ahg927835 jgi|Araly1|927835|scaffold_300292.1
Length=543
Score = 778 bits (421), Expect = 0.0
Identities = 488/521 (94%), Gaps = 2/521 (0%)
Strand=Plus/Plus
Query 92 ACAATAACAATGGGCAACTACGTTTCATGCGCTCTAAACAAAACGTCATCGTCACCGTTG 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 ACAATAACAATGGGCAACTACGTTTCATGCGCTCTAAACAAAACGTCATCGTCACCGTTG 71
Query 152 GCAAAAGTGATTCTCCCTGACGGTGGAGTGCGTGACATCCACGTGCCGACGAAAGCAGCC 211
|| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 72 GCCAAAGTGATTCTCCCGGACGGTGGAGTGCGTGACATCCACGTGCCGATGAAAGCAGCC 131
Query 212 GAGCTCATGATGGAGATGCCAAGCTATTTCCTCGTCGACACCAAGTCGGTGAAAGTAGGC 271
||||||||||||||||||||||| ||||||||||||||| |||| ||| ||||| | |||
Sbjct 132 GAGCTCATGATGGAGATGCCAAGATATTTCCTCGTCGACGCCAAATCGTTGAAAATCGGC 191
Query 272 CGTAAATTTATCCCACTCGCCGCCGACGACGATCTTGATCTTGGAGGCTGTC-ATGTGTA 330
|||||||| |||||||||||||||||||||||||| || |||||||||| || |||||||
Sbjct 192 CGTAAATTCATCCCACTCGCCGCCGACGACGATCTCGACCTTGGAGGCT-TCCATGTGTA 250
Query 331 CGTCGCATTTCCGATGACACGTGCCACTTCTGCAGCCAACGCTTCCGACATGGCTAGGCT 390
||| || ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 251 CGTTGCTTTTCCGATGACACGTGCCACTTCTGCAGCCAACGCCTCCGACTTGGCTCGGCT 310
Query 391 CTACCTCACCGGAAAGAAACGCACGAAAAACTGCGGTCATAGGAGAGTGTCTCCGGAAAA 450
||||||| ||||||||||||| ||||||| ||||| | |||||||||||||||||||| |
Sbjct 311 CTACCTCGCCGGAAAGAAACGTACGAAAAGCTGCGATAATAGGAGAGTGTCTCCGGAAGA 370
Query 451 TGAAGATAATGATGACGTGAGGCTGATCGGACCGAAGCTGAATCTTGAAGACATAGAAGA 510
||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 371 TGAAGATAACGATGACGTAAGGCTGATCGGACCGAAGCTGAACCTTGAAGACATAGAAGA 430
Query 511 GTTCTCGGCGGCAGAGTTTATTCATCGGATCTCTGTTTCGAAATCTAAGAAACCACAGTT 570
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 431 GTTCTCGGCGGCGGAGTTTATTCATCGGATCTCTGTTTCCAAATCTAAGAAACCACAGTT 490
Query 571 GGAGACGATAGCTGAAGATCATGTGCCCTAATTCAACAAAA 611
||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 491 GGAGACGATAGTTGAAGAACATGTGCCCTAATCCAACAAAA 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34463116968
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5