BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03290.1
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340484 jgi|Araly1|340484|fgenesh1_pg.C_scaffold_3000247 1033 0.0
> Ahg340484 jgi|Araly1|340484|fgenesh1_pg.C_scaffold_3000247
Length=828
Score = 1033 bits (559), Expect = 0.0
Identities = 759/848 (90%), Gaps = 43/848 (5%)
Strand=Plus/Plus
Query 1 ATGGCAAGATCGCTCAAGAAATCAGTCAAGTTGAGCCTAAGACATGTCCGGATCCGTTCT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 1 ATGGCAAGATCGCTCAAGAAATCAGTTAAGTTGAGCCTAAGACATGTCCGGGTCCG---T 57
Query 61 TCAACCATCGGGTTTAAACCAGACTCTAGTTCCATAGAAATAGATCAGAGAATTGAGTTT 120
| | | |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 58 T------T---G---AAACAAGACTCTAGTTCCATAGAAAGAGATCAGAGAATTGAGTTT 105
Query 121 C-T--------C---------GGAGAAGAGGAAACCGATGGCGAC---AGCACCAGTGAG 159
| | | ||||||||||||| |||||| ||| |||| ||| |||
Sbjct 106 CTTGGACGAGACAAGGGGGTTGGAGAAGAGGAAAACGATGGTGACAGTAGCAGCAGCGAG 165
Query 160 TATgaagagtttgaagaagagaaagaacgaggaggagaaggggaaggagaggaacaagaT 219
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 166 TATGAAGAGTTTGAAGAAGAGGAAGAAGGAGGAGGAGAAGGGGAAGGAGAGGAACAAGAT 225
Query 220 GATGGCTGCAAGATCGTTGAGAGCGGT-TACAAAAGTGAACACGAAGAGACCGAAGCCGC 278
||| | |||||| ||||| ||||||| | ||||||| | || ||||| ||||||||
Sbjct 226 GAT-G--GCAAGAGCGTTGTGAGCGGTGGA-AAAAGTGGATGCGGGGAGACAGAAGCCGC 281
Query 279 GGTGGAAGCAGTAGAGGCGGAGATTACAGAGGCAGGGAATAGGGTGATGGTGGTGGTTGA 338
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 282 GGTGGAAGCAGCAGAGGCGGAGATTACAGAGGCCGGGAATAGGGTGATGGTGGTGGTGGA 341
Query 339 TAAAGTGATTGCATCAACTGGAGCTCTTGAGTGGGCTTTGAAACATACACTACAATCACA 398
|||||||||||||||||||||||||||||| ||||||||||| |||||| |||| |||||
Sbjct 342 TAAAGTGATTGCATCAACTGGAGCTCTTGAATGGGCTTTGAAGCATACATTACAGTCACA 401
Query 399 AGACTATCTTTTTCTTTTATATTTCTCCAAACCCTTTAGAAAAGGAAAAAGGAAGAACCG 458
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 402 AGACTATCTTTTTCTCTTATATTTCTCCAAACCCTTTAGAAAAGGCAAAAGGAAGAACCG 461
Query 459 GAAAAGTGAAGTAAAGACCGATGAACTTGTTCATACTCTTAAA-AAACTCTGCCAAACAA 517
||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||||
Sbjct 462 GAAAAGTGAAGTAAAGACCGATGAACTCGTCCATACTC-TAAAGAAACTCTGCCAAACAA 520
Query 518 AGCGACCAGGGATagaggttgagataagaaggctacaaggaaaagagaaagagaaaggag 577
||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 521 AGCGACCCGGGATAGAGGTTGAGATAAGAAGGCTAGAAGGAAAAGAGAAAGATAAAGGAG 580
Query 578 agaagatagtggaagaagctaaagaaCAACAAGTGAGTCTATTAGTTGTTGGAAAAGAGA 637
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 581 AGAAGATAGTGGAAGAAGCTAAAGAACAACAAGTGAGTCTATTAGTGGTTGGAGAAGAGA 640
Query 638 AGAAACCGCCAGTGTGGAGATTGTTGAAGAGATGGGGATGGAAGAAACGGCGAGGCCGAG 697
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 641 AGAAACCGCCGGTTTGGAGATTGTTGAAGAGATGGGGATGGAAGAAACGGCGAGGACGAG 700
Query 698 CCGGAACTCTCAAGTATTGCCTAGAGAAGGCTTCATGTATGACCATTGCGGTTAAACCAA 757
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 701 CCGGAGTTCTCAAGTATTGCCTAGAGAAGGCTTCATGTATGACCATTGCAGTTAAACCAA 760
Query 758 AGAACCGTAAACTTGGTGGTTACTTGATCACAACCAAGCGTCACAAGAACTTTTGGCTCT 817
|||||||||| |||||||||||| ||||||||||||| |||||||||||||||||| | |
Sbjct 761 AGAACCGTAAGCTTGGTGGTTACCTGATCACAACCAAACGTCACAAGAACTTTTGGTTGT 820
Query 818 TAGCTTGA 825
||||||||
Sbjct 821 TAGCTTGA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30498333600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5