BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03305.1
Length=2493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317213 jgi|Araly1|317213|fgenesh1_pm.C_scaffold_3000229 3541 0.0
Ahg903170 jgi|Araly1|903170|Al_scaffold_0003_298 523 2e-147
> Ahg317213 jgi|Araly1|317213|fgenesh1_pm.C_scaffold_3000229
Length=6102
Score = 3541 bits (1917), Expect = 0.0
Identities = 2099/2187 (96%), Gaps = 12/2187 (1%)
Strand=Plus/Plus
Query 126 ATGGAATCGATCGGCGACGACGATGAGCTCCGAAGCAAAACAGTTTCTCTTCCGAGAAGA 185
|||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 1 ATGGAATCGATCGGCGACGACGATGAGCTCAGTAGCAAAACAGTTTCTCTTCGGAGAAGA 60
Query 186 ATCTCGTTTACGA------TTCTTCTTCTTCTTCTGTTAATCTCCTTGAGTACAAGGGTC 239
||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||
Sbjct 61 ATCTCGTTTACGATTCTTCTTCTTCTTCTTCTTCTCTTAATCTCCTTGAGTACGAGGGTC 120
Query 240 TCTGGTTCG-TTAGACAAATCTGGAAGAAGAGTGATTGAAGCGAGAACTGGGCAAGACTT 298
||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGGTTCGATT-GACGAGTCTGGAAGAAGAGTGATTGAAGCGAGAACTGGGCAAGACTT 179
Query 299 GATTTGGGTTGTTCAGCTATCCGATCTCCATTTCAGTGTCCATCATCCTGAAAGAGCCAT 358
||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||
Sbjct 180 GATTTGGGTTGTTCAGCTATCTGATCTCCATTTCAGTGTTCATCATCCCGAGAGAGCCAC 239
Query 359 TGATTTCAAAAACATTGTGGGTCCTGCTCTGGCTCTTATCAACCCTTCTCTCGTCTTAAT 418
|||||||||||||| |||||| ||||||||| ||||||||||||||||||||||| | ||
Sbjct 240 TGATTTCAAAAACAGTGTGGGCCCTGCTCTGTCTCTTATCAACCCTTCTCTCGTCCTCAT 299
Query 419 CACCGGTGATCTCACAGATGGGAAAAGCAAAGACATGTTAACAATGAAGTTAAATGAAGA 478
||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 CACTGGAGATCTCACAGATGGGAAAAGCAAAGACATGTTAACAATGAAGCTAAATGAAGA 359
Query 479 TGAGTGGTTAGAATACGAGAGTGTGATGCAAGATGTTGT-GAAGAGAAGTGGGCTTAATA 537
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 360 TGAGTGGTTAGAATACGAGAGTGTGATGCAAGATGTTGTGGAA-AGAAGTGGGCTTAATA 418
Query 538 AGAGCATATTTTATGATCTTAGGGGTAACCATGACAACTTTGGTGTTCCGTCTGTTGGTT 597
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 419 AGAGCATATTTTATGATCTCAGGGGTAACCATGACAACTTTGGTGTTCCGGCTGTTGGTT 478
Query 598 CATCTGTTGATTTCTTCTCAAAGTATAGCATCAATGGACAGATGGGAAGGAAAGGAAATG 657
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 479 CATCTGTTGATTTCTTCTCAAAGTATAGCATCAATGCACAGATGGGAAGGAAAGGAAATG 538
Query 658 TTAACACCATAACTGTTGAGACTAGCGAACGTAAACATCTGTTTGTCGGTATTGACACCA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTAACACCATAACTGTTGAGACTAGCGAACGTAAACATCTGTTTGTCGGTATTGACACCA 598
Query 718 CAATGCATATTGGATTACGCGGCCCAACAAATCTCTTTGGGCATCCAACTGATGAACTTT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAATGCATATTGGATTACGCGGCCCAACAAATCTCTTTGGGCATCCAACTGATGAACTTT 658
Query 778 TGAGCTCACTCGACTCACACCTCTCGCAATGGGATAACCAATCAGCAAAACCTGTTGCAA 837
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 TGAGCTCACTCGACTCACACCTGTCGCAATGGGATAACCAATCAGCAAAACCTGTTGCAA 718
Query 838 AAATATCATTTGGGCATTTCCCATTGTCATTCACAGCGCTGTCACATTCTCAAAAGAGCC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAATATCATTTGGGCATTTCCCATTGTCATTCACAGCGCTGTCACATTCTCAAAAGAGCC 778
Query 898 TTAAAGATGTTTTTCTGAAGCACTCTATCTCAGCTTATTTGTGTGGCCATCTACACTCAA 957
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 TTAAAGATGTTTTTCTGAAGCACTCCATCTCAGCTTATTTGTGTGGCCATCTACACTCAA 838
Query 958 GGTTCGGCAAGAATCTTAAAAGACATCATCACTCTGGTGGTATCAGTTTATCAGATAATG 1017
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 839 AGTTTGGCAAGAATCTTAAAAGACATCACCACTCTGGTGGTATCAGTTTATCAGATAATG 898
Query 1018 ACTTGTTTCAGCTGAATATGAGGCAGAGTGGTGCTGAAAGTACTTCGAACTGCTCTTTTG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 899 ACTTGTTTCAGCTGAATATGAGGCAGAGTGGTGCTGAAAGTACTTCGAACTGCTCATTTG 958
Query 1078 GAGCCTTACCAGCTGCAGAGTTCTGGGAATGGGAGATGGGTGACTGGAGAAAAAACAGGG 1137
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 959 GAGCCTTACCAGCTGCAGAATTCTGGGAATGGGAGATGGGTGACTGGAGAAAAAACAGAG 1018
Query 1138 CAATGCGGATCATGGCCATTGATAGGGGTCATGTTTCATATGTTGATCTTGACTTCAAGT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CAATGCGGATCATGGCCATTGATAGGGGTCATGTTTCATATGTTGATCTTGACTTCAAGT 1078
Query 1198 CAAAACCCCAGAAG-ACTATCATATTACCGACCTTTCCATTAGATTCACGTTTTATGTCA 1256
||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAAAATCCCT-AAGGACTATCATATTACCGACCTTTCCATTAGATTCACGTTTTATGTCA 1137
Query 1257 ACATCCTTTGCACGTCACAAATACGAGTGCCAACATATGATCTCATCATCGTATGACGCA 1316
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct 1138 ACATCCTTTGCACGTCACAAATACGAATGCCAACATATGATCTCATCATCCTATGACACA 1197
Query 1317 ATAAGAGCCATTGTTTTTTCTCATTCTCTGGTTGTGGAAGTTGTAGCTAGAGTTTATGAC 1376
|||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1198 ATAAGAGCCATTGTCTTTTCTCATTCCCTGATTGTGGAAGTTGTAGCTAGAGTTTATGAC 1257
Query 1377 TCAAGCCCTGGATTTGATAATCTGGTCATGGAAGCTCCAATGAGAAAACATGGAGGCGAT 1436
||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 1258 TCAAGCCCTGGATTTGACAACCTGGTCATGGAAGCTCCAATGAGAAAACTTGGAGGCGAT 1317
Query 1437 TCTTCTTCTTCCGGGGCAACATTCTTTTCACTTCCATGGAATTATAGGGCCTTTGAAGAT 1496
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1318 TCTTCTTCTTCCGGGGCAACATTATTTTCACTTCCATGGAATTATAGGGCCTTTGAAGAT 1377
Query 1497 CCCTTACCTGATAGATTTTGGCTGCAAATAGAAGTCACTGATATCAAAGGCAGATTAACC 1556
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1378 CCCTTACCTGATAGATTTTGGCTGCAAATAGAAGTCACTGACATCAAAGGCAGATTAACT 1437
Query 1557 TTATCAGAAATGCGACCATTTTCCATCAATGGTCTAAGCTCTAAAGTTTCATGGACATGG 1616
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1438 TTATCAGAAATGCGACCATTTTCCATCAATGGTCTAAGCTCTAAAGTCTCATGGACATGG 1497
Query 1617 AATGAGTTCCGTGTCATGGGCTGCCAGTGGGCGGCATTATATTACCCGATTCTTTGGCCT 1676
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| ||
Sbjct 1498 AATGAGTTCCGTGTCATGGGTTGCCAATGGGCAGCATTATATTACCCGATTCTTTGGGCT 1557
Query 1677 GCTCTATATAGTTTGTTTCTCGTTTTTCTTATCCCCAAATGCATCATCATCGTTTTCAAG 1736
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GCTATGTATAGTTTGTTTCTCGTTTTTCTTATCCCCAAATGCATCATCATCGTTTTCAAG 1617
Query 1737 AAGCAGTACACTCTCAAGAAGTTCATTGCCAAGAAAGGACCTATCACACTTGTACTGTGG 1796
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1618 AAGCAGTACACTCTCAAGAAGTTCATTGCCAAGAGAGGACCAATCACACTTGTACTGTGG 1677
Query 1797 ATTCTCCAAGACCTCTGCAGAATGCCTGTGGTTTGGTTCGGTTACATGGCATACTTGTTC 1856
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 ATTCTCCAAGACCTCTGCAGAATGCCTGTGGTTTGGTTCGGTTACATGGCATACTTGTTG 1737
Query 1857 TATCTCATATTCTTTCCTTGGTTCTCCGGTGAAGTGTTTGCTGATTCTGGAGACAGAGCA 1916
||||| ||||||||||||||||||||||||||||||| | ||||||| ||| ||||| ||
Sbjct 1738 TATCTGATATTCTTTCCTTGGTTCTCCGGTGAAGTGTATACTGATTCCGGAAACAGAACA 1797
Query 1917 TACATGACTATTATGGGATGGGTGGTGACGAGCTCAGGCGCAGATAGGAAACATGAATAC 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 TACATGACTATTATGGGATGGGTGGTGACGAGCTCAGGCGCAGATAGGAAACATGAATAC 1857
Query 1977 ATTGGACAACCTGATGTAATGGTTGTGGTGATCCCACATGTGGTCTTTGTTGTTATCCCC 2036
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1858 ATTGGACAACCTGATGTAATGGTTCTGGTGATCCCACATGTGGTCTTTGTTGTTATCCCC 1917
Query 2037 AGTGTCTTGGTTGTGTGTTGTCTGGTTGCTGAGAGAGAAATCTACAAAGATCACATTCGA 2096
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1918 AGTGTCTTGGTTGTGTGTTGTTTGGTTGCTGAGAGAGAAATCTACAAAGATCACATTCGA 1977
Query 2097 ACTGTCTCTGGTAAGAAAGAGGATGACCATGACCGGGGAAGGAAGAAGAGATCACAACGC 2156
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1978 ACCGTCTCTGGAAAGAAAGAGGATGATCATGACCGGGGAAGGAAGAAGAGATCACAACGC 2037
Query 2157 CGCTCACTGTTATTCTCGAACAGAAGACTGTTTCGGAAATCGGTCTTGCTGGCTTCATTA 2216
||||| ||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 2038 CGCTCGCTGTTATTCTCTAACAGAAGACTGTTTCGTAAATCACTCTTGGTGGCTTCATTA 2097
Query 2217 GCTCTATATTGGAAGCATTTCAAGAATTGCTGGGCATTAGGTAGAGCTTATGAGATGAAT 2276
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2098 GCTCTATATTGGAAGCATTTCAAGAATTGCTGGGCATTAGCTAGAGCTTATGAGATGAAT 2157
Query 2277 GTGGTTCATTTTCCAGGTTACAGCCTT 2303
|||||||||||||||| ||||| |||
Sbjct 2158 ATGGTTCATTTTCCAGGGTACAGTCTT 2184
> Ahg903170 jgi|Araly1|903170|Al_scaffold_0003_298
Length=882
Score = 523 bits (283), Expect = 2e-147
Identities = 332/356 (93%), Gaps = 2/356 (1%)
Strand=Plus/Plus
Query 1623 TTCCGTGTCATGGGCTGCCAGTGGGCGGCA-T-TATATTACCCGATTCTTTGGCCTGCTC 1680
|||| |||||||||| |||| | |||| || | ||||||||||||||||||||| | |||
Sbjct 284 TTCCTTGTCATGGGCCGCCAATAGGCGACATTATATATTACCCGATTCTTTGGCTTCCTC 343
Query 1681 TATATAGTTTGTTTCTCGTTTTTCTTATCCCCAAATGCATCATCATCGTTTTCAAGAAGC 1740
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 344 TATATAGTTTTTTTCTCGTTTTTCTTATCCCCAAATGCATCATCACCGTTTTCAAGAAGC 403
Query 1741 AGTACACTCTCAAGAAGTTCATTGCCAAGAAAGGACCTATCACACTTGTACTGTGGATTC 1800
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 404 AGTACACTCTCAAGAAGTTCATTGCCAAGAAAAGACCAATCACACTTGTACTGTGGATTC 463
Query 1801 TCCAAGACCTCTGCAGAATGCCTGTGGTTTGGTTCGGTTACATGGCATACTTGTTCTATC 1860
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TCCAATACCTCTGCAGAATGCCTGTGGTTTGGTTCGGTTACATGGCATACTTGTTCTATC 523
Query 1861 TCATATTCTTTCCTTGGTTCTCCGGTGAAGTGTTTGCTGATTCTGGAGACAGAGCATACA 1920
|||||||||||||||||||||| |||||||||| | ||||||| ||| ||||| ||||||
Sbjct 524 TCATATTCTTTCCTTGGTTCTCGGGTGAAGTGTATACTGATTCCGGAAACAGAACATACA 583
Query 1921 TGACTATTATGGGATGGGTGGTGACGAGCTCAGGCGCAGATAGGAAACATGAATAC 1976
|||||||||| || ||||||||||| |||||||||||||||||| |||||||||||
Sbjct 584 TGACTATTATTGGCTGGGTGGTGACAAGCTCAGGCGCAGATAGGCAACATGAATAC 639
Score = 372 bits (201), Expect = 8e-102
Identities = 226/238 (95%), Gaps = 1/238 (0%)
Strand=Plus/Plus
Query 441 AAAAGCAAAGAC-ATGTTAACAATGAAGTTAAATGAAGATGAGTGGTTAGAATACGAGAG 499
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 6 AAAAGCAAAGACAATGTTAACAATGAAGCTAAATGAAGATGAGTGGTTAGAATACGAGAA 65
Query 500 TGTGATGCAAGATGTTGTGAAGAGAAGTGGGCTTAATAAGAGCATATTTTATGATCTTAG 559
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 66 TGTGATGCAAGATGTTGTGAAAACAAGTGGGCTTAATAAGAGCATATTTTATGATCTTAG 125
Query 560 GGGTAACCATGACAACTTTGGTGTTCCGTCTGTTGGTTCATCTGTTGATTTCTTCTCAAA 619
||||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 126 AGGTAATCATGACATTTTTGGTGTTCCGGCTGTTGGTTCATCTGTTGATTTCTTCCCAAA 185
Query 620 GTATAGCATCAATGGACAGATGGGAAGGAAAGGAAATGTTAACACCATAACTGTTGAG 677
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 186 GTATAGCATCAATGGACAGATGGAAAGGAAAGGAAATGTTAACACCATAACTGTTGAG 243
Score = 145 bits (78), Expect = 2e-33
Identities = 108/121 (89%), Gaps = 8/121 (7%)
Strand=Plus/Plus
Query 2041 TCTTGGTTGTGTGTTGTCTGGTTGCTGAGAGAGAAATCTACAAAGATCACATTCGAACTG 2100
|||||||||| ||||||||||||||||||||||| |||||||||| | | | | ||
Sbjct 640 TCTTGGTTGTATGTTGTCTGGTTGCTGAGAGAGAGATCTACAAAG---AGA---G-A-TG 691
Query 2101 TCTCTGGTAAGAAAGAGGATGACCATGACCGGGGAAGGAAGAAGAGATCACAACGCCGCT 2160
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 TCTCTGGTATGAATGAGGATGACCATGACCGGGGAAGGAAGAAGAGATCACAACGCCGCT 751
Query 2161 C 2161
|
Sbjct 752 C 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93968634415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5