BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03320.1
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477581 jgi|Araly1|477581|fgenesh2_kg.3__282__AT3G03320.1 1101 0.0
> Ahg477581 jgi|Araly1|477581|fgenesh2_kg.3__282__AT3G03320.1
Length=808
Score = 1101 bits (596), Expect = 0.0
Identities = 727/789 (92%), Gaps = 13/789 (2%)
Strand=Plus/Plus
Query 113 AATATTTCTTAATTAAGAGGCTT----A---ACGTTGGCGTTTTTGACGAAAATGGAGCA 165
||| |||||| |||||||||||| | |||||| | ||||||||||||||||||||
Sbjct 1 AATTTTTCTTTATTAAGAGGCTTACCGATTCACGTTGACATTTTTGACGAAAATGGAGCA 60
Query 166 ACCAATGTCGCCGGGAACGAAGTCGGTGGATCTCCGAGAATGCATGGAATCACTTCTCCG 225
||||| |||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 61 ACCAACGTCGCCGGGAACAAAGTCGGTGAATCTCCGAGAATGCATGGAGTCACTTCTACG 120
Query 226 TTTTA-GTCTGAGATCTCATTTAAACGAATCTGTTCCAAGTTTCGATCTTGACCTGACCA 284
||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTACG-CTGAGCTCTCATTTACACGAATCTGTTCCAAGTTTCGATCTTGACCTGACCA 179
Query 285 GAGATTTTTGTCTTCATCTCCTTGGGGAAGCTACAGATTCAACAGAAAAATCTGCGGTGT 344
|||||||||| ||||||||||||| |||||| ||||||||||| |||||| |||||||||
Sbjct 180 GAGATTTTTGCCTTCATCTCCTTGAGGAAGCGACAGATTCAACTGAAAAACCTGCGGTGT 239
Query 345 ACAAGCTTCTAGCAACGGCTTTGTCTGAATGTCTAGCTTCCGAGGGTGATAAAAATTCTA 404
| ||||||||||||| |||| | ||||||||||||||||||||||||||||| ||| |||
Sbjct 240 ATAAGCTTCTAGCAAGGGCTCTCTCTGAATGTCTAGCTTCCGAGGGTGATAACAATCCTA 299
Query 405 ACTTGGAAAAATACAGCAAACTGATTCATGGCTTGGGATATGACTTAATAAATATGTTGA 464
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct 300 ACTTGGAAAAATACAGCAAATTGTTTCATGGCTTGGGACATGACTTAATAAATATGCTGA 359
Query 465 AGGAGGTGAACTTTGAGCTTCATGTCCAAGAGCCTTACTTCACCCAATTGAAAGATGGTT 524
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAAGGTAAACTTTGAGCTTCATGTCCAAGAGCCTTACTTCACCCAATTGAAAGATGGTC 419
Query 525 TGAAAACTGTTGAAGGAAGATGCGCAGTGGGAGACTACATGAGAATTAGTTCAGGAGATT 584
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||| ||
Sbjct 420 TGAAAACTGTTGAAGGAAGATGTGCAGTGGGAGACTACATGAGGATCAGTTCAGGAGCTT 479
Query 585 TTCTTTTGTTCAATAAATGCTTGCTGCTTGAAGTTCAGGACGTTCACCGTTATACTTCAT 644
|| |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 480 TTATTTTATTCAATAAATGCTTGCTGCTTGAAGTTCAGGACGTTCATCATTATACTTCAT 539
Query 645 TCTCAGAAATGCTGA-AAGTGGAGGGTCTTGCCAAAGTTCTTCCTGGAGTTGAAAGTATA 703
||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 TCTCAGAAATGCTGATAA-TGGAGGGTCTTGACAAAGTTCTTCCTGGAGTTGAAAGTATA 598
Query 704 GAAGAAGGTGTTCAAGTTTACCGAAACTTTTATTCTGAAGAGAAGGAAAGAATGAACGGT 763
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 599 GAAGAAGGTGTTCAAGTTTATCGAAACTTTTACTCTGAAGAGAAGGAAAGAATGAACGGT 658
Query 764 GTTGTAGCTATTCGTGTTGCAAAACCAGCTAATCAGCCTTCTGCAGCTTTGGCAGGAGTA 823
||| |||| |||| |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 659 GTTCTAGCAATTCATGTTGCGAAACCAGCTAATCAGCCTTATGCAGCTTTGGCAGGAGTA 718
Query 824 TTGTCTGAACTGAAGTCCAGTGGGATCAAAAGCCTGTTGGATGAATACACAGC-TGGGGT 882
||||||||||||||||||| |||||||||||||||||||||||| || ||||| || | |
Sbjct 719 TTGTCTGAACTGAAGTCCACTGGGATCAAAAGCCTGTTGGATGACTATACAGCCTGAG-T 777
Query 883 TACCTCGTA 891
|||||||||
Sbjct 778 TACCTCGTA 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39724079514
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5