BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03330.1
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477582 jgi|Araly1|477582|fgenesh2_kg.3__283__AT3G03330.1 1604 0.0
> Ahg477582 jgi|Araly1|477582|fgenesh2_kg.3__283__AT3G03330.1
Length=1063
Score = 1604 bits (868), Expect = 0.0
Identities = 976/1028 (95%), Gaps = 8/1028 (1%)
Strand=Plus/Plus
Query 24 AAGACTTGGTCTCTCGCTGGTTGCTTCAATCCGAGAAAATGCTGACTCTACTCTTCTTCT 83
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGACTTGGTCTCTCGCT-GTTGCTTCAATCCGAGAAAATGCTGACTCTACTCTTCTTCT 59
Query 84 CTCTCGGAGCGCTTCTTCTTATCGTTCTGCTCTTCAAATTTGCA-TTCGCCGATGGAGAT 142
|||||||| | | |||||||||| ||||||||||||||| ||| || ||||||||||||
Sbjct 60 CTCTCGGA--G-TCCTTCTTATCGGTCTGCTCTTCAAATTCGCACTT-GCCGATGGAGAT 115
Query 143 TTTACCTTGATTTCGAAGAAGCATGTGAAGCGTGAGGCCATACAAGGCAAGGTCGTCTGG 202
|||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 116 TTTACCCTGATTTCGAAGAAGCATGTGAAGCGTGAAGCCATACAAGGAAAGGTCGTCTGG 175
Query 203 ATCACAGGGGCTAGCCGTGGAATTGGTGAAATTCTTGCTAAACAGTTTGCAAGTTTAGAT 262
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 176 ATCACAGGGGCTAGCCGTGGGATTGGGGAAATTCTTGCTAAACAGTTTGCAAGTTTAGAT 235
Query 263 GCCAAGCTTATTCTCTCTGCTAGGAATAAAGCTGAACTGGATCGGGTTAAGAGTGAGCTT 322
|||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||
Sbjct 236 GCCAAGCTTATTCTCTCTGCGAGGAATAAAGCTGAACTGGAGAGAGTTAAGAGTGAGCTC 295
Query 323 AAAGGTAAATTTGCACCAGAAGATGTCAAGGTTTTGCCTTTAGATTTAGCTAGCGGCGAA 382
|||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 296 AAAGGTAAATATGCACCAGAAGATGTCAAGGTTTTGCCTTTAGATTTAGCTAGTGGTGAA 355
Query 383 GAGTCACTCAAACATGTTGTAGAGCAAGCAGTGTCGCTTTTCCCTGGAGCTGGTGTTGAT 442
||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 356 GAGTCGCTCAAACATGTCGTAGAGCAAGCTGTGTCACTTTTCCCTGGGGCTGGTGTTGAT 415
Query 443 TATTTGGTTCACAATGCTGCCTTTGAGCGTCCGAAATCCAAGGCATCGGATGCAAGTGAG 502
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 416 TATTTGGTTCACAATGCTGCCTATGAGCGTCCGAAATCCAAGGCATCTGATGCAACTGAG 475
Query 503 GAAACTCTCAAGACTACATTCGATGTTAATGTCTTTGGGACGATATCTCTGACAAAGTTG 562
||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 476 GAAACTCTCAAGACTACATTCGATGTTAATGTCTTTGGGACTATAACTCTTACAAAGTTG 535
Query 563 GTAGCTCCTCATATGCTAAAACAAGGAGGGGGTCATTTTGTTGTGATAAGCAGTGCTGCA 622
|||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 536 GTAGCTTCTCATATGCTAAAACAAGGAGGCGGTCATTTCGTTGTGATAAGCAGTGCTGCA 595
Query 623 GGAAAGGTACCATCACCTGGACAGGCTATATATTCTGCTTCAAAACATGCTCTTCATGGC 682
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 596 GGAAAGGTACCATCACCTGGACAGGCTATATATTCTGCTTCAAAACATGCTCTGCACGGC 655
Query 683 TACTTCCACAGCTTGCGTTCTGAGTTCTGTCAGAAGGGAATCAAGGTTACCGTCGTTTGT 742
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 656 TACTTCCACAGCTTGCGTTCTGAGTTTTGTCAGGAGGGAATCAAGGTTACCGTCGTTTGT 715
Query 743 CCTGGTCCAATAGAAACCTGGAATGGTACAGGAACATCAACTTCGGAAGACA-GCAAGTC 801
||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 716 CCTGGTCCAATAGAAACCTTGAATGGTACAGGAACATCAACTTCGGAAGACAAG-AAGTC 774
Query 802 TCCTGAGAAACGTGTGTCATCTGAACGATGTGCAGAGCTGACTATAATCGCTGCATCTCA 861
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 775 TCCTGAGAAACGTGTGTCATCTGAACGATGTGCAGAACTGACTATAATCGCTGCGTCTCA 834
Query 862 TAACTTGAAGGAAGCTTGGATTTCATATCAGCCAGTACTACTCGTGATGTATCTAGTGCA 921
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 835 TAACTTGAAGGAAGCTTGGATTTCATATCAGCCGGTACTGCTCGTGATGTATCTAGTGCA 894
Query 922 GTACATGCCTTCCCTTGGCTTCTGGCTCATGGACAAGGTTGGAGGAAAGCGTGTGGAGGT 981
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 895 GTACATGCCTTCCCTTGGCTTCTGGCTCATGGACAAGGTTGGAGGGAAGCGTGTAGAGGT 954
Query 982 CGCGGAAAAGAAAGGCAACACATACTCGTGGGATTTACTGTTCGGGAAGAAGACTAAAAC 1041
||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 955 CGCGGAAAAGAAAGGCAACACATACTCATGGAATTTACTGTTCGGGAAGAAGACCAAAAC 1014
Query 1042 AAACTGAA 1049
||||||||
Sbjct 1015 AAACTGAA 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5