BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03340.1
Length=1643
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477583 jgi|Araly1|477583|fgenesh2_kg.3__284__AT3G03340.1 2270 0.0
Ahg488610 jgi|Araly1|488610|fgenesh2_kg.6__1744__AT5G17440.1 1206 0.0
Ahg887912 jgi|Araly1|887912|Al_scaffold_0288_1 412 3e-114
> Ahg477583 jgi|Araly1|477583|fgenesh2_kg.3__284__AT3G03340.1
Length=1457
Score = 2270 bits (1229), Expect = 0.0
Identities = 1375/1445 (95%), Gaps = 11/1445 (1%)
Strand=Plus/Plus
Query 97 agagagagagagagagaACGACTATGGACGCTATAAGGAAGCAGCTTGATGTGCTCATGG 156
||||||||||||||||||||| ||||| || |||||||||||||| ||||| |||||||
Sbjct 20 AGAGAGAGAGAGAGAGAACGAAGATGGATGCCATAAGGAAGCAGCTCGATGTACTCATGG 79
Query 157 GAGCTAACCGAAACGGCGACGTTCAGGAGGTGAATCGCAAATACTACGACCGTGATGTGT 216
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 80 GAGCGAACCGAAACGGCGACGTTCAGGAGGTGAATCGCAAATACTACGACCGTGATGTCT 139
Query 217 GTCGTCTTTACTTGTCTGGTCTCTGCCCTCACGATCTCTTCCAATTGACGAAAATGGATA 276
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GTCGTCTTTACTTGTCCGGTCTCTGCCCTCACGATCTCTTCCAATTGACGAAAATGGATA 199
Query 277 TGGGACCATGCCCAAAGGTGCACTCTTTGCAGCTTCGGAAAGAATACCGAGAAGCAAGGG 336
||||||| ||||||||||||||||||||||||||| |||||||||| || ||||||| ||
Sbjct 200 TGGGACCTTGCCCAAAGGTGCACTCTTTGCAGCTTAGGAAAGAATATCGGGAAGCAAAGG 259
Query 337 CAAAAGGTGTTGATAACTACGACAGGGAATTGGAAGATGCCATAGACAGGCTTATCGTTG 396
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 260 CAAAAGGTGTTGATAACTACGACAGGGAATTGGAAGATGCCATAGACAGACTTATCGTTG 319
Query 397 AGTGTGATAGGAAGATTGGTAGGGCCCTTAAGCGTCTTCAAGAAGAGGACGCCAAAGCTG 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 AGTGTGATAGGAAGATTGGTAGGGCCCTTAAGCGTCTTCAAGAAGAGGACGCCAAAGCTG 379
Query 457 CCATTGCCATTTCTGTCTCTGAAGTCACTCAGTCGCCTGAAATTCTCGAGTTATCGGAGA 516
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 380 CCATTGCCATTTCAGTCTCTGAAGTCACTCAGTCTCCTGAAATTCTTGAGTTATCGGAGA 439
Query 517 AAATCAAAGAGAAGATGAAGGAAGCAGATATCCACGATCTTGAAGGCAAAATGGATCTTA 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AAATCAAAGAGAAGATGAAGGAAGCAGATATCCACGATCTTGAAGGCAAAATGGATCTTA 499
Query 577 AGATTAGAGCTCTTGAGTTAGTCGAAGAGATGAGGACCAAGAGAGCTGACCAACAGGCGG 636
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 500 AGATTAGAGCTCTTGAGTTAGTCGAAGAAATGAGGACCAAGAGAGCTGACCAGCAGGCGG 559
Query 637 TGTTGCTGTTGGAAGCCTTCAACAAAGATAGAGCATCCTTGCCACAGCCCGTTCCAGCTC 696
|| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 560 TGCTGCTGTTGGAAGCCTTTAACAAAGATAGAGCATCCTTGCCACAGCCTGTTCCAGCTC 619
Query 697 AACCACCATCTTCCGAATTACCTCCACCGGATCCTCGCACTCAAGAAATGATAAATGAGA 756
||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 620 AACCACCATCTTCCGCATTACCTACACCAGATCCTCGCACTCAAGAAATGATAAATGAGA 679
Query 757 AACTGAAGAAGGCAGAAGATCTTGGTGAACAAGGAATGGTTGATGAAGCCCAGAAAGCCC 816
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 680 AACTGAAGAAGGCAGAAGATCTTGGTGAACAAGGAATGGTTGATGAAGCACAGAAAGCAC 739
Query 817 TGGAAGAGGCTGAAGCTCTTAAGAAGCTTACAGTTAGACGAGAACCTCCAGCAGATTCAA 876
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 740 TGGAAGAGGCTGAAGCTCTTAAGAAGCTTACAGTTAGACGAGAACCTGCAGCAGATTCAA 799
Query 877 CGAAGTACACCGCTGTTGATGTGCGCATCACAGACCAAAAGTTGCGTCTATGTGACATAT 936
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 800 CGAAGTACACTGCTGTTGATGTGCGCATTACGGACCAAAAGTTGCGTCTATGTGACATAT 859
Query 937 GTGGAGCATTCTTGAGCGTCTATGACAGTGATCGCCGTTTAGCTGATCATTTTGGGGGGA 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 860 GTGGAGCATTCTTGAGCGTCTATGACAGTGATCGCCGTTTAGCTGATCATTTTGGTGGGA 919
Query 997 AGCTTCATCTAGGATACATGCTAGTCCGGGACAAATTAACAGAGCTTCTGGATGAGAAGG 1056
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 920 AGCTTCATTTAGGATACATGCTAGTCCGGGACAAATTAACTGAGCTTCTGGATGAGAAGG 979
Query 1057 CCAATATACGCAAGGAAAGATCAAAGGAACGGAACAGTAAGGAGAGAGAATCAAGTAAAG 1116
||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 980 CCAATTTACGCAATGAAAGATCAAAGGAACGGAACAGTAAGGAGAGGGAATCAAGTAAAG 1039
Query 1117 ACCGAGAGAAAGAACAAGAAACTAGTCGTGAACATCGAAGAGATTATGATCGCAGGAGTA 1176
||||||||||||| | || | |||||| ||||| ||||||||||||||||||||||||||
Sbjct 1040 ACCGAGAGAAAGAGCGAGGATCTAGTCATGAACGTCGAAGAGATTATGATCGCAGGAGTA 1099
Query 1177 GAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACAGAGACTATGATCGGTCAC 1236
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1100 GAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACAGGGACTATGATCGGTCAC 1159
Query 1237 ACTCAAGAAGCAGACGTAGGTCACGCTCACGGTCCAGGTCAAGAGATAGACCAAGGGACT 1296
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1160 ACTCAAGAAGCAGACGTAGGTCACGCTCACGGTCCAGGTCCAGAGACAGACCAAGGGACT 1219
Query 1297 ATGATCGCCACAGGCGTCACAACCGCTACTAGATCGATCGGTCTTGCTGTCTAACAGGGT 1356
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1220 ATGATCGCCACAGGCGTCACAACCGCTACTAG---G-TCGGTCTTGCTGTCTAACAGGGT 1275
Query 1357 TTACAAGTTACAAATGGTTTTAGGATCTATCACCGAAACTTTTTTCTGTCTACATGTATG 1416
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1276 TTACAAGTTACAAATGGTTTTAGGATCCATCACCGAAACTTTTTT-TGTCTACATGTATG 1334
Query 1417 TTACTCAAGTATGTTAGATGAG-TTTCAGAAAA-TTTCACATCTTTTTCTTTTACCACAA 1474
|| || |||| || |||||||| |||||||||| ||||||||| |||||||||||||| |
Sbjct 1335 TTGCTGAAGTTTGGTAGATGAGCTTTCAGAAAAATTTCACATCATTTTCTTTTACCACCA 1394
Query 1475 ACTAAAGACTTGGAAGAAACAAGATG-TGGTTTAT-GTTTTTACCACATCTGAGAAGCGT 1532
|||||||||||| ||||| ||||| | || ||||| |||||| | ||||||||||||||
Sbjct 1395 ACTAAAGACTTGAAAGAAGCAAGAAGATGTTTTATTGTTTTT-CT-CATCTGAGAAGCGT 1452
Query 1533 GTATG 1537
|||||
Sbjct 1453 GTATG 1457
> Ahg488610 jgi|Araly1|488610|fgenesh2_kg.6__1744__AT5G17440.1
Length=1486
Score = 1206 bits (653), Expect = 0.0
Identities = 1053/1243 (85%), Gaps = 40/1243 (3%)
Strand=Plus/Plus
Query 108 gagagaACGACTATGGACGCTATAAGGAAGCAGCTTGATGTGCTCATGGGAGCTAACCGA 167
|||| ||||| ||||||||||| ||||| || || ||||||||||||||||||||| ||
Sbjct 70 GAGATAACGAAGATGGACGCTATGAGGAAACAACTCGATGTGCTCATGGGAGCTAACAGA 129
Query 168 AACGGCGACGTTCA-GGAGGTGAATCGCAAATACTACGACCGTGATGTGTGTCGTCTTTA 226
|||||||| | ||| |||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 130 AACGGCGATG-TCACGGAGGTCAATCGCAAATACTACGACCGTGATGTTTGCCGTCTTTA 188
Query 227 CTTGTCTGGTCTCTGCCCTCACGATCTCTTCCAATTGACGAAAATGGATATGGGACCATG 286
| | ||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 189 CCTATCTGGTCTCTGTCCTCACGAGCTCTTCCAATTGACGAAAATGGATATGGGTCCTTG 248
Query 287 CCCAAAGGTGCACTCTTTGCAGCTTCGGAAAGAATACCGAGAAGCAAGGGCAAAAGGTGT 346
|||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 249 CCCAAAGGTGCACTCTTTGCAGCTGAGGAAAGAATATAAAGAAGCAAAGGCAAAAGGTGT 308
Query 347 TGATAACTACGACAGGGAATTGGAAGATGCCATAGACAGGCTTATCGTTGAGTGTGATAG 406
||| |||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 309 TGACAACTACGATAGGGAATTGGAAGATGCGATAGATAGGCTTATTGTTGAGTGTGATAG 368
Query 407 GAAGATTGGTAGGGCCCTTAAGCGTCTTCAAGAAGAGGACGCCAAAGCTGCCATTGCCAT 466
||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| ||
Sbjct 369 GAAGATTGGTAGGGCTCTTAATCGTCTTCAGGAAGAGGATGCCAAAGCTGCCATTGCAAT 428
Query 467 TTCTGTCTCTGAAGTCACTCAGTCGCCTGAAATTCTCGAGTTATCGGAGAAAATCAAAGA 526
||||||| | ||| | |||||||||||||||||||| || |||||| || ||||||||||
Sbjct 429 TTCTGTCACAGAATTTACTCAGTCGCCTGAAATTCTTGAATTATCGAAGCAAATCAAAGA 488
Query 527 GAAGATGAAGGAAGCAGATATCCACGATCTTGAAGGCAAAATGGATCTTAAGATTAGAGC 586
|||||||||||||||||| | ||||||||||||||||||| ||||| |||||||||||
Sbjct 489 GAAGATGAAGGAAGCAGACCTGCACGATCTTGAAGGCAAAACAGATCTGAAGATTAGAGC 548
Query 587 TCTTGAGTTAGTCGAAGAGATGAGGACCAAGAGAGCTGACCAACAGGCGGTGTTGCTGTT 646
|||||||||||| |||||||||||||| ||||||||||||| |||||| ||| | |||||
Sbjct 549 TCTTGAGTTAGTTGAAGAGATGAGGACGAAGAGAGCTGACCTACAGGCTGTGCTACTGTT 608
Query 647 GGAAGCCTTCAACAAAGATAGAGCATCCTTGCCACAGCCCGTTCCAGCTCAACCACCATC 706
||| ||||||||||||||||| |||||||||| ||||||| |||||||||| | |||| |
Sbjct 609 GGATGCCTTCAACAAAGATAGGGCATCCTTGCAACAGCCCATTCCAGCTCAGCAACCAGC 668
Query 707 TTCCGAATTACCTCCACCGGATCCTCGCACTCAAGAAATGATAAATGAGAAACTGAAGAA 766
| | | |||||||| || |||||||| |||||||||||||| ||||| ||||| |||||
Sbjct 669 TGCAGCGTTACCTCCTCCCGATCCTCGTACTCAAGAAATGATCAATGAAAAACTAAAGAA 728
Query 767 GGCAGAAGATCTTGGTGAACAAGGAATGGTTGATGAAGCCCAGAAAGCCCTGGAAGAGGC 826
|||||||| |||||||||||||||||||||||||| || |||||||| || ||||||||
Sbjct 729 AGCAGAAGAGCTTGGTGAACAAGGAATGGTTGATGAGGCGCAGAAAGCACTAGAAGAGGC 788
Query 827 TGAAGCTCTTAAGAAGCTTACAGTTAGACGAGAACCTCCAGCAGATTCAACGAAGTACAC 886
|||||||||||||||||||| | ||||| ||||||| || |||||||| ||||||||
Sbjct 789 GGAAGCTCTTAAGAAGCTTACTGCTAGACAAGAACCTGTAGTGGATTCAACCAAGTACAC 848
Query 887 CGCTGTTGATGTGCGCATCACAGACCAAAAGTTGCGTCTATGTGACATATGTGGAGCATT 946
|||||||| |||||||| |||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 849 TGCTGTTGACGTGCGCATTACAGACCAGAAGCTGCGTCTATGTGACATATGCGGAGCATT 908
Query 947 CTTGAGCGTCTATGACAGTGATCGCCGTTTAGCTGATCATTTTGGGGGGAAGCTTCATCT 1006
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |
Sbjct 909 TTTGAGCGTCTATGACAGTGATCGTCGGTTAGCTGATCATTTTGGAGGGAAGCTTCATTT 968
Query 1007 AGGATACATGCT-AGTCCGGGACAAATTAACAGAGCTTCTGGATGAGAAGGCCAATA-TA 1064
|| |||||||| | |||| |||||||| ||||||||| ||| |||||| ||| | |
Sbjct 969 GGGTTACATGCTGA-TCCGCGACAAATTGGCAGAGCTTCAGGAGGAGAAGAACAA-AGTT 1026
Query 1065 CGCAAGGAAAGA-TC-AA-A--GGA-A-CGGA--ACAGTAAG--GAGAG--AGAATCAAG 1111
| ||||||| | || || | ||| | || | | || ||| ||||| |||| ||||
Sbjct 1027 CACAAGGAACGGGTCGAAGAAAGGAGATCGAAGGAGAG-AAGTAGAGAGCGAGAACCAAG 1085
Query 1112 TAAAGACCGAGAGAAAGAACAAGAAACTAGTCGTGAACATCGAAGAGAT-TATGATCGCA 1170
||||||| ||||| || | || ||| ||||| | | |||||||| | ||| || |
Sbjct 1086 TAAAGAC--AGAGACGGAGGA-GA---TAGCCGTGACCGTGGAAGAGATGT-TGACCGTA 1138
Query 1171 GGAGTAGAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACAGAGACTATGATC 1230
||||||||||||| || ||||||||||||| | || ||||| |||||| ||||| |||
Sbjct 1139 GGAGTAGAGATCGCGACAGGCACCATGACC---ACCGAGAACATGACAGAAACTATAATC 1195
Query 1231 GGTCACACT--CAA-GAAG-C-AGACGTAGGT-CACGCTCACGGTCCAGGTCAAGAGATA 1284
||||| | | | || | | ||| | || || | || |||||| |||| || || |
Sbjct 1196 AGTCACG-TGGCTATGA-GTCGAGAAGCCGGCGCA-GTTCGCGGTCCCGGTCTAGGGAAA 1252
Query 1285 GACCAAGGGACTATGATCGCCACAGGCGTCACAACCGCTACTA 1327
|||| ||||| |||||||||| ||| || || ||||||||||
Sbjct 1253 GACCGAGGGATTATGATCGCCGCAGACGCCATGACCGCTACTA 1295
> Ahg887912 jgi|Araly1|887912|Al_scaffold_0288_1
Length=279
Score = 412 bits (223), Expect = 3e-114
Identities = 263/282 (93%), Gaps = 4/282 (1%)
Strand=Plus/Plus
Query 1047 GATGAGAAGGCCAATATACGCAAGGAAAGATCAAAGGAACGGAACAGTAAGGAGAGAGAA 1106
||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1 GATGAGAAGGCCAATTTACGCAATGAAAGATCTAAGGAACGGAACAGTAAGGAGAGGGAA 60
Query 1107 TCAAGTAAAGACCGAGAGAAAGAACAAGAAACTAGTCGTGAACATCGAAGAGATTATGAT 1166
||||||||||||||||||||||| | || | |||||| ||||| ||||||||||||||||
Sbjct 61 TCAAGTAAAGACCGAGAGAAAGAGCGAGGATCTAGTCATGAACGTCGAAGAGATTATGAT 120
Query 1167 CGCAGGAGTAGAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACAGAG-ACTA 1225
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 121 CGCAGGAGTAGAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACA-AGGACTA 179
Query 1226 TGATCGGTCACACTCAAGAAGCAGACGTAGGTCACGCTCACGGTCCAGGTCAAGAGATAG 1285
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 180 TGATCGGTCAAACTCAAGAAGCAGACGTAGGTCACGCTCACGGTCCAGGTCCAGAGACAG 239
Query 1286 ACCAAGGGACTATGATCGCCACAGGCGTCACAACCGCTACTA 1327
||| |||||||||||||||||| | ||||||||||| |||||
Sbjct 240 ACCTAGGGACTATGATCGCCAC-G-CGTCACAACCGATACTA 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61591926165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5