BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03341.1
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477584 jgi|Araly1|477584|fgenesh2_kg.3__285__AT3G03341.1 514 3e-145
Ahg497388 jgi|Araly1|497388|fgenesh2_kg.288__1__AT3G03341.1 494 3e-139
> Ahg477584 jgi|Araly1|477584|fgenesh2_kg.3__285__AT3G03341.1
Length=442
Score = 514 bits (278), Expect = 3e-145
Identities = 308/322 (96%), Gaps = 4/322 (1%)
Strand=Plus/Plus
Query 1 ATCTTCCACTTCTTGTTCTACTCATATTCCATACATCATATCCCTATAACATCAACAAAC 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTCCACTTCTTGTGCTACTCATATTCCATACATCATATCCCTATAACATCAACAAAC 60
Query 61 ATTTCATCGGCTTGATCAG--TTTTTAACCAACGATGATTCCGATATGCGTGCAGTGCGG 118
|||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 61 ATTTCATCTGTTTGATCAGTTTTTTTAACCAACGATGATTCCGATATGCGTGCAATGCGG 120
Query 119 AACGGGCGGAAACCCTTGTAGATGCAAAGTGGTAGGACCGACGTTAGGGCTTGTGGCGTT 178
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACAGGCGGAAACCCTTGTAGATGCAAAGTGGTAGGACCGACGTTAGGGCTTGTGGCGTT 180
Query 179 TGTAGCAGCCGGAATAGTTGAATGGCCGGTCGGAGCATTGGTTTATATCTTTAAGCACGC 238
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 181 TGTAGCAGCCGGAATAGTGGAATGGCCGGTCGGAGCTTTGGTTTATATCTTTAAACACGC 240
Query 239 CAAAGG-TCGCCGCATTATGGGTCATCCGGCCACCCATGTTTATCCCAAGGTCTCTCGTT 297
||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 -AAAGGGTCGACGCATTATGGGTCATCCGGCCACCCATGTTTATCCCAAAGTCTCTCGTT 299
Query 298 CCATTCCCATATGATTATGATG 319
||||||||||||||||||||||
Sbjct 300 CCATTCCCATATGATTATGATG 321
> Ahg497388 jgi|Araly1|497388|fgenesh2_kg.288__1__AT3G03341.1
Length=445
Score = 494 bits (267), Expect = 3e-139
Identities = 345/379 (91%), Gaps = 20/379 (5%)
Strand=Plus/Plus
Query 1 ATCTTCCACTTCTTGTTCTACTCATATTCCATACATCATATCCCTATAACATCAACAAAC 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTCCACTTCTTGTGCTACTCATATTCCATACATCATATCCCTATAACATCAACAAAC 60
Query 61 ATTTCATCGGCTTGATCAGTTTTT--AACCAACGATGATTCCGATATGCGTGCAGTGCGG 118
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 61 ATTTCATCGGTTTGATCAGTTTTTTTAACCAACGATGATTCCGATATGCGTGCAATGCGG 120
Query 119 AACGGGCGGAAACCCTTGTAGATGCAAAGTGGTAGGACCGACGTTAGGGCTTGTGGCGTT 178
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 AACAGGCGGAAACCCATGTAGATGCAAAGTGGTAGGACCGACGTTAGGGCTTGTGGCATT 180
Query 179 TGTAGCAGCCGGAATAGTTGAATGGCCGGTCGGAGCATTGGTTTATATCTTTAAGCACGC 238
|||||||||||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 181 TGTAGCAGCCGGAATAGTGGAATGGCC------AGCATTGGTTTATATCTTTAAACACGC 234
Query 239 CAAAGG-TCGCCGCATTATGGGTCATCCGGCCACCCATGTTTATCCCAAGGTCTCTCGTT 297
||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 235 -AAAGGGTCGCCGCATTATGGGTCATCCAGCCACCCATGTTTATCCCAAAGTCTCTCGTT 293
Query 298 CCATTCCCATATGATTATGATGACTT-ATTGA-CTTCA-TGATCACTCAC-TT-CTAAGT 352
||||||||||||||||||||||| || || || || || | | | | | || ||||||
Sbjct 294 CCATTCCCATATGATTATGATGAATTCAT-GATCT-CACTTTT-A-T-ATGTTTCTAAGT 348
Query 353 TATATTGTATCTTATCTTT 371
|||||||||||||||||||
Sbjct 349 TATATTGTATCTTATCTTT 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18887016555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5