BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03350.2
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477582 jgi|Araly1|477582|fgenesh2_kg.3__283__AT3G03330.1 640 0.0
Ahg951999 jgi|Araly1|951999|scaffold_28800002.1 518 5e-146
Ahg903150 jgi|Araly1|903150|Al_scaffold_0003_278 440 1e-122
> Ahg477582 jgi|Araly1|477582|fgenesh2_kg.3__283__AT3G03330.1
Length=1063
Score = 640 bits (346), Expect = 0.0
Identities = 396/420 (94%), Gaps = 4/420 (1%)
Strand=Plus/Plus
Query 816 GAAATCCAAGGCATCGGATGCAAGTGAGGAAACTATCAATACTACATTCGATATCAATGT 875
||||||||||||||| ||||||| |||||||||| |||| |||||||||||| | |||||
Sbjct 448 GAAATCCAAGGCATCTGATGCAACTGAGGAAACTCTCAAGACTACATTCGATGTTAATGT 507
Query 876 CTTTGGGACGATAACTCTTATAAAGTTGGTCA-CTCCTCATATGCTAAAACAAGGAGGCG 934
||||||||| |||||||||| ||||||||| | || ||||||||||||||||||||||||
Sbjct 508 CTTTGGGACTATAACTCTTACAAAGTTGGT-AGCTTCTCATATGCTAAAACAAGGAGGCG 566
Query 935 GTCATTTTGTTGTGATAAGCAGTGCTGCAGGAAAGGTACCATCACCTGGACAGGCTATAT 994
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 GTCATTTCGTTGTGATAAGCAGTGCTGCAGGAAAGGTACCATCACCTGGACAGGCTATAT 626
Query 995 ATTCTGCTTCAAAACATGCTCTGCACGGCTACTTCCACAGCTTGCGTTCTGAGTTCTGTC 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 627 ATTCTGCTTCAAAACATGCTCTGCACGGCTACTTCCACAGCTTGCGTTCTGAGTTTTGTC 686
Query 1055 AGGAGGGAATCAAAGTGACCGTCGTTAT-TCCTGGTCCAATAGAAACGTTGAATGGTACA 1113
||||||||||||| || ||||||||| | |||||||||||||||||| ||||||||||||
Sbjct 687 AGGAGGGAATCAAGGTTACCGTCGTT-TGTCCTGGTCCAATAGAAACCTTGAATGGTACA 745
Query 1114 GGAACATCAACTTCGGAAGACAAGAAGTCTCATGAGAAGCGTGTGTCATCTGAATGATAT 1173
||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| |
Sbjct 746 GGAACATCAACTTCGGAAGACAAGAAGTCTCCTGAGAAACGTGTGTCATCTGAACGATGT 805
Query 1174 GCAGAACTGACTATAATCGCCGCGTCTCATAGCTTGAAGGAAGCTTGGATTTCATATCAG 1233
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 806 GCAGAACTGACTATAATCGCTGCGTCTCATAACTTGAAGGAAGCTTGGATTTCATATCAG 865
Score = 93.5 bits (50), Expect = 4e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1305 TATCAGCCAGTACTGCTTGTGATGTATCTAGTGCAGTACATGCCTTCCCTTGGCTT 1360
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 860 TATCAGCCGGTACTGCTCGTGATGTATCTAGTGCAGTACATGCCTTCCCTTGGCTT 915
> Ahg951999 jgi|Araly1|951999|scaffold_28800002.1
Length=375
Score = 518 bits (280), Expect = 5e-146
Identities = 329/352 (93%), Gaps = 5/352 (1%)
Strand=Plus/Plus
Query 24 TTTCCCATTAATCATAATAATCATGATCATGATGAAACTTAAACCTCTGATTCTAGTCTT 83
||||||||||||||| | ||||||||||||||||||||||||||||||| || |||| ||
Sbjct 1 TTTCCCATTAATCAT-A-AATCATGATCATGATGAAACTTAAACCTCTGGTTATAGTGTT 58
Query 84 TTTCTCAATGTTCCTCGTGTTACACTATCTCACTAATCAAACCAATTCCGATTCTTACCT 143
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 59 TTTCTCCATGTTCCTCGTGTTACACTATCTCACTAATCAAGCCAATTCCGATTCTT-CC- 116
Query 144 CGGAGGACATACCGGAATTACAACTCCGTTGCGGCCACCACCACCAAGAAAGACATACTG 203
| || |||||||||||||||||||||||||| |||||| |||||||||||||| |||||
Sbjct 117 C-TAGAACATACCGGAATTACAACTCCGTTGCCGCCACCGCCACCAAGAAAGACTTACTG 175
Query 204 CAGCAAGTCATCTTCATCTCCACCTCCGCCGAAATACATGTATGTAACCGGTGTGCCTGG 263
||| | |||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 176 CAGTAGGTCATCTTCATCTCCACCTCCGCCTAAATACATGTATGTGACCGGTGTGCCTGG 235
Query 264 GGAACTCTACCGGACCGAGCCAGATGACCAATGGGGATATAATTCTAGTGTAAACCGAAA 323
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct 236 GGAACTCTACCGGACCGAGCCAGACGACCAATGGGGATATTATTCTAGTGTAAACCGGAA 295
Query 324 TCTGGTTAAGTGTCTCTTGGTTATTGTAATTGTGGGGTTTGGAGTTATAAAT 375
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 296 TCTGGTTAAGTGTCTCATGGTTATTGTAATTGTGGGGTTTGGAGTTATAAAT 347
> Ahg903150 jgi|Araly1|903150|Al_scaffold_0003_278
Length=384
Score = 440 bits (238), Expect = 1e-122
Identities = 276/294 (94%), Gaps = 3/294 (1%)
Strand=Plus/Plus
Query 82 TTTTTCTCAATGTTCCTCGTGTTACACTATCTCACTAATCAAACCAATTCCGATTCTTAC 141
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 88 TTTTTCTCCATGTTCCTCGTGTTACACTATCTCACTAATCAAGCCAATTCCGATTCTT-C 146
Query 142 CTCGGAGGACATACCGGAATTACAACTCCGTTGCGGCCACCACCACCAAGAAAGACATAC 201
| | || |||||||||||||||||||||||||| |||||| |||||||||||||| |||
Sbjct 147 C-C-TAGAACATACCGGAATTACAACTCCGTTGCCGCCACCGCCACCAAGAAAGACTTAC 204
Query 202 TGCAGCAAGTCATCTTCATCTCCACCTCCGCCGAAATACATGTATGTAACCGGTGTGCCT 261
||||| | |||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 205 TGCAGTAGGTCATCTTCATCTCCACCTCCGCCTAAATACATGTATGTGACCGGTGTGCCT 264
Query 262 GGGGAACTCTACCGGACCGAGCCAGATGACCAATGGGGATATAATTCTAGTGTAAACCGA 321
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 265 GGGGAACTCTACCGGACCGAGCCAGACGACCAATGGGGATATTATTCTAGTGTAAACCGG 324
Query 322 AATCTGGTTAAGTGTCTCTTGGTTATTGTAATTGTGGGGTTTGGAGTTATAAAT 375
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 325 AATCTGGTTAAGTGTCTCATGGTTATTGTAATTGTGGGGTTTGGAGTTATAAAT 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53440613735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5