BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03360.1
Length=1732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311624 jgi|Araly1|311624|fgenesh1_pm.C_scaffold_1000404 1515 0.0
Ahg934878 jgi|Araly1|934878|scaffold_402866.1 658 0.0
Ahg914056 jgi|Araly1|914056|Al_scaffold_0001_4310 63.9 4e-09
> Ahg311624 jgi|Araly1|311624|fgenesh1_pm.C_scaffold_1000404
Length=1383
Score = 1515 bits (820), Expect = 0.0
Identities = 1201/1374 (87%), Gaps = 70/1374 (5%)
Strand=Plus/Plus
Query 287 CAAAGAAGCTGGAGACTTGATCAGTAGGTTGCCTGATGATATTCTCCAACTAATTCTCTC 346
||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||
Sbjct 48 CAAAGAAGCTGGAGACTTGATCAGTAGTTTGCATGATGATATTCTCCAACTTATTCTCTC 107
Query 347 CTATCTTCCAACCAGATTGGCGATCAAAACTTCCGTTTTATCCAGGCGATGGAGGCATGT 406
|||||||||||||||||| || |||| ||| |||| || ||| |||||||||||||| |
Sbjct 108 CTATCTTCCAACCAGATTCGCCATCAGAACGTCCGCCTTGTCCCGGCGATGGAGGCATCT 167
Query 407 ATGGTCTGATACATGGTCCCTCTCCTTCCATAGGGACAGACCGGATGCTCCTTGTATTAA 466
|||||||||||||||||||||| |||| || |||| ||||| |||||| ||| ||||||
Sbjct 168 ATGGTCTGATACATGGTCCCTCACCTTTTATGGGGATAGACCAGATGCTGCTTCTATTAA 227
Query 467 CAGAATCCTAGATCGCTACAGGGCTCCCAAGATGATGAGTTTTCGTATC---T---GTT- 519
| |||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 228 CGGAATCCTAGATCGCTACAGGGCTCCCAAGATGATGAGTTTCCGTATCTGTTCCCGTTC 287
Query 520 -CT-TGTTGCAG----GGCAG--CCTGTATCAGCAGACCCGACACGCATGCTGACATCGA 571
|| |||| | | | | || || || | || |||||| || ||||||||||||
Sbjct 288 CCTCTGTTCCCGTTCCCTCCGTTCCCGTGCCAACCGATCCGACAAGCTTGCTGACATCGA 347
Query 572 CAGTTGGATCAACTTCGCCATGTCCCGAAACGTGGAGAATCTGTCCCTGTATCTCGATGA 631
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 348 CAGTTGGATCAACTTCGCCGTGTCCCGAAACGTGGAGAATCTGTCCCTGTATCTCGATAA 407
Query 632 GGATAAATATGATATCCCTGAATTCCTTTACATCAATTCCTCTCTCAAGCAACTCTACCT 691
|||| |||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 408 GGATGAATATGATATCCCTGACTTCCTTTACGTCAATTCCTCTCTCAAACAACTCTACCT 467
Query 692 TGATTTCGGCTGCAAAAAGG-ATTTTA-T-AT-CTCTGAATCCCAAATGTTCTGTGTCTT 747
| | | | |||| |||| | | || | ||||||||||||| ||||||||||
Sbjct 468 TCA-AT----T-----AAGGTATTTCACTAATGATATGAATCCCAAATGCTCTGTGTCTT 517
Query 748 GGACATCCCTGAAGAACCTGTCATTGTATCATTGCAACATCTCTGATGAATCCATTGCTA 807
||| |||||| |||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 518 GGATATCCCTTAAGACCCTGTCATTGTATGATTGCAACATCTCTGATGAATCTATTGCTA 577
Query 808 TTATTCTATCTGGTTGTCCCATTCTCGAAAGCTTAT-TGTTGTTTTTCTGCAAGAAACTG 866
||||||||||||||||||| ||||||| ||||||| | ||| |||||||||| ||||||
Sbjct 578 ATATTCTATCTGGTTGTCCCGTTCTCGAGAGCTTATCT-TTGCTTTTCTGCAATAAACTG 636
Query 867 AAGGTCCTTGATCTCAGCAAATCACCGCGTCTGA-TAACATTAGAAATCACTCG-TAGAT 924
| ||| |||||||||||||||||||||| ||| | ||||||||||||||| || || |
Sbjct 637 AGGGTTCTTGATCTCAGCAAATCACCGCATCT-ACTAACATTAGAAATCAAGCGTTA-TT 694
Query 925 GTCG-AATGGAGCCAACACAGCTCGTTGCACCACATATCCGTTGTCTCAGATTGATAAAC 983
|| | | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 695 GT-GTTACGGAGCCAACACAGCTCGTTGCACCACATATCCGTTGTCTCAGATTGAGGAAC 753
Query 984 TCTGAGAAACCATGTGCTTTAGTTGATGTCTCCTCTTTATCCCAAGCTGAACTAGACATT 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TCTGAGAAACCATGTGCTTTAGTTGATGTCTCCTCTTTATCCCAAGCTGAACTAGACATT 813
Query 1044 ACCGCTTACGCAATAGTTGATAATAAACTGGAGGCTGATTTTCATCAGACCATGGTGGTA 1103
||| || | ||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 814 GCCGTTTTCAAAATAGTTGATAATAAACTGGACGTTGATTTTCATCAGACCATGGTGGTA 873
Query 1104 AAGATGTTAGAAAAGTGTCAGAATGTGGAGAAGCTTACTTTGGGGGCAAACTTTCTTAAG 1163
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 874 AAGATGCTAGAAAAGTGTCAGAATGTGGAGAAGCTTACTTTGGGGGCAAACATTCTTAAG 933
Query 1164 ATGTTATCTCTTGCCGAGCTCCGTGGTGTTTCTTTTCCAAAGTTGAAGGCT-AAAGCTCT 1222
|| |||||||||||||||||||||| |||||||||||||||||||||| || |||||| |
Sbjct 934 ATTTTATCTCTTGCCGAGCTCCGTGTTGTTTCTTTTCCAAAGTTGAAG-CTTAAAGCTTT 992
Query 1223 GATACTTGAGACAATGATCTCTCGATATGTTATT-CATGGTATAGTAAAGGTGCTACAAA 1281
|| |||||| |||||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 993 GACACTTGACACAATGATCTCTCGATATGTTATTGCC-GGTATAGTAAGGGTGCTACAAA 1051
Query 1282 ACTCGCCTGACTTGAAGAAGCTAACCATACACCCAATGGGGTCTGCCGGCTCATATCCCA 1341
||||||||||||||||||||||||||||||| |||||||| | | ||||||||
Sbjct 1052 ACTCGCCTGACTTGAAGAAGCTAACCATACAACCAATGGG--CA-C------ATATCCCA 1102
Query 1342 TACCGGAAGAGCATATTGACATATACTTGGATTCTCATGGCTTGAATTGGGATCCATCCT 1401
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1103 TACCGGAAAAGCATATTGACATATACTTGGATTCTCATGGCTTGAATTGGGATCAATCCT 1162
Query 1402 GGAGCTCGGAGTTTAAGAACACTTCCCGCAGGAATGTAGAGTCAAAGCAAGTGGCTTCGT 1461
|||||||||||||| || | | || | || | |||||||||||||||||
Sbjct 1163 GGAGCTCGGAGTTT--GA----T----GTAG-A--GT----T-AAAGCAAGTGGCTTCGT 1204
Query 1462 TTCTGCAACTTGTGCTTAAAACCATATCA-ACATTAGAGTTGATTGTCGCAAGGTTGGAA 1520
|| ||||||||||||||||||||| | | ||||||||||||||||| |||||| || ||
Sbjct 1205 TTATGCAACTTGTGCTTAAAACCACAA-AGACATTAGAGTTGATTGTAGCAAGGGTGAAA 1263
Query 1521 GGTTATATCAAAGGAAGACGTTTTGTAGAGTTGCGTCAGATGGTTCCAATGCTTCCTCGC 1580
| |||||||||||||||| |||||||||||||||||| |||||| ||||||||| |||||
Sbjct 1264 GATTATATCAAAGGAAGATGTTTTGTAGAGTTGCGTCGGATGGTACCAATGCTTACTCGC 1323
Query 1581 AACAACGATGTCTCCATTGTGCTCAGCTCAAGAAGAAAACGATTCAGAGTGACT 1634
|||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1324 AACAACAATGTCTCCATTGTGCTCAGCTCAAGAAAAAAACGATGCAGAGCGACT 1377
> Ahg934878 jgi|Araly1|934878|scaffold_402866.1
Length=4121
Score = 658 bits (356), Expect = 0.0
Identities = 1026/1331 (77%), Gaps = 120/1331 (9%)
Strand=Plus/Plus
Query 316 TGCCTGATGAT-ATTCTCCAACTAATTCTCTCC-TATCTTCCAACCAGATTGGCGATCAA 373
||||||||| | || |||||| | || |||||| || |||| |||||||| || ||||
Sbjct 154 TGCCTGATG-TGATCCTCCAAGTTATCCTCTCCTTA-ATTCCGACCAGATTCGCCATCAG 211
Query 374 AACTTCCGTTTTATCCAGGCGATGGAGGCATGTATGGT-CTGATACATGGTCCCTCTCCT 432
|||||||| || ||||| ||||||||||||||||||| || ||| | || |||| ||
Sbjct 212 GACTTCCGTCTTGTCCAGACGATGGAGGCATGTATGGTCCT-ATATACCTTCTCTCTACT 270
Query 433 TCCATAGGGACAGACCGGATGCTCCTT-GTATTAACAG-AATCCTAGATCGCTACAGGGC 490
|||||| |||||||||||||||| || | || ||| | || ||||| |||||||| |||
Sbjct 271 TCCATAAGGACAGACCGGATGCTAATTCG-ATAAAC-GAAACCCTAGCTCGCTACAAGGC 328
Query 491 TCCCAAGATGATGAGTTTTCGTATCTGTTCTTGTTGCAGGGCAGCCTGTATCAGCAGACC 550
||| |||||||||||||| ||||||||| | ||| | || | | | ||
Sbjct 329 TCCGAAGATGATGAGTTTCCGTATCTGTAC------CAGTG-AG-C----T---C-GA-- 370
Query 551 CGACACGCATGCTGACATCGACAGTTGGATCAACTTCGCCATGTCCCGAAACGTGGAGAA 610
| | | | || |||| |||||||||||||| ||||| ||||| |||||||||||||
Sbjct 371 -TA-A-TCTTCCTAACATGGACAGTTGGATCAAGTTCGCTTTGTCCAGAAACGTGGAGAA 427
Query 611 TCTGTCCCTGTATCTCGA--TGAGGA-TAAATATGATATCCCTGAATTCCTTTACATCAA 667
|||||| |||||| | || ||||| | | ||| |||||||||||||||| ||| ||||
Sbjct 428 TCTGTCGCTGTATTTGGAGCGGAGGAGTGACTATAATATCCCTGAATTCCTCTACGTCAA 487
Query 668 TTCCTCTCTCAAGCAACTCTACCTTG-ATTTCG-GCTGCAAAAAGGATTTTATATCT-CT 724
||||||| ||||| || ||| | || | || | | | | || ||| ||| ||| |
Sbjct 488 TTCCTCTGTCAAG-AA-TCT--C-TGCA-TT-GAG-T-C---AA-TATTCTAT-TCTAAT 533
Query 725 -GAA-TCCCAAATGTTCTGTGTCTTGGACATCCCTGAAGAACCTGTCATTGT-ATCATTG 781
|| ||||||||| |||||||| ||||||||||||||||| |||| |||| | |||
Sbjct 534 ATAATTCCCAAATGCTCTGTGTCGTGGACATCCCTGAAGAATATGTCCTTGTGGT-GTTG 592
Query 782 CAA-CATCTCTGATGAATCCATTGCTATTATTCTATCTGGTTGTCCCATTCTCGAAAGCT 840
||| | ||||||||||||||||||||| || |||| ||||||||| |||||||||||||
Sbjct 593 CAAGC-TCTCTGATGAATCCATTGCTAAGATCCTATTTGGTTGTCCGATTCTCGAAAGCT 651
Query 841 TATTGTTGTTTTTCTGCAAGAAACTGAAGGTCCTTGATCTCAGCAAATCACCGCGTCTGA 900
|| |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 652 TAACATTGTGTTTCTGCAAGGAACTGAAGGTTCTTGATCTCAGCAAATCACCGCGTCTGA 711
Query 901 TAACATTAGAAATC-ACT--CGT-AGATGTCGAAT--GGAGCCAAC-ACAGCTCGTTGCA 953
||||||||| ||| | | || || ||| |||| || ||||| | || |||| |||
Sbjct 712 TAACATTAGTAATTTA-TAACGACAG-TGT-GAATCCGGGGCCAAGGA-AGATCGTGGCA 767
Query 954 CCACATATCCGTTGTCTCAGATTGATAAACTCTGAGAAACCATGTGCTTTA---GTTGAT 1010
|||||||||| | |||||||||||| |||| || || |||||||| |||| ||||||
Sbjct 768 CCACATATCCATCGTCTCAGATTGAAAAACACTCAGTTACCATGTGATTTATTAGTTGAT 827
Query 1011 GTCTCCTCTTTATCCCAAGCTGAACTAGACATTACCGCT-TA-CGCAATA--GTTGATAA 1066
||||| |||||| || ||||| |||||||||||| ||| || | | || || || ||
Sbjct 828 GTCTCATCTTTAACCGAAGCTAAACTAGACATTA--GCTATAACTCC-TACCGT-GA-AA 882
Query 1067 TAAACTGGAGGCTGATTTTCATCAGACCATGGTGGTAAAGATGTTAGAAAAGTGTCAGAA 1126
|| ||| | |||||||| | ||| | ||||||| || ||| | |||| |||||||||||
Sbjct 883 -AA-CTGAACGCTGATTTACTTCACATCATGGTGCTAGAGAGGCTAGACAAGTGTCAGAA 940
Query 1127 TGTGGAGAAGCTTACTTTGGGGGCAAA-CTTTCTTAAGATGTTATCTCTTGCCGAGCTCC 1185
||| ||||||||||||||||||| ||| |||||| |||| |||||||||||||||||||
Sbjct 941 TGTAGAGAAGCTTACTTTGGGGG-AAAGCTTTCTCGAGATTTTATCTCTTGCCGAGCTCC 999
Query 1186 GTGGTGTTTCTTTTCCAAAGTTGAAGGCTAAAGCTCTGATACTTGAGACAATGATCTCTC 1245
|||||||| |||||||||| || |||| || |||| | | ||||||||| ||||||||
Sbjct 1000 GTGGTGTTCCTTTTCCAAACTTCAAGGTTAGAGCTTTAACGCTTGAGACACCGATCTCTC 1059
Query 1246 GA-TATGTTATTCATGGTATAGTAAAGGTGCTACAAAACTCGCCTGACTTGAAGAAGCTA 1304
| ||||| |||| ||||||||||| ||||||||||||||| ||||| || |||||||||
Sbjct 1060 -ACTATGTAATTCCTGGTATAGTAAGGGTGCTACAAAACTCTCCTGAATTAAAGAAGCTA 1118
Query 1305 ACCATACACC-CAATGGGGTCTGCCGGCTCATATCCCATACCGGAAGAGC-ATATTGAC- 1361
||| || | ||| ||| || |||| | | ||||||| | | ||||||||
Sbjct 1119 ACCCTAAAATACAAAAGGGA-TGATGGCT--T--C--ATACCGGGC-ATCTATATTGACG 1170
Query 1362 ATATACTTG-GATTCTCATGGCTTGAATTGGGATCCATCCTGGAGCTCGGA-GTTTAAGA 1419
| | || || | ||||||||||||| || |||| || ||||| |||||| | | ||
Sbjct 1171 AAA-ACCTGCG-TTCTCATGGCTTGGATACGGATAAATGCTGGACCTCGGAAGCG-A-GA 1226
Query 1420 ACACTTCCCGCAGGA-ATGTAGAGTCA--A-AGCA-AGTGGCTTCGTTTCTGCAACTTGT 1474
|||| || | || | | | | |||| | | |||||||| | ||||||||
Sbjct 1227 GT-CTTCAA--AG-ACATTT-GCCCCTTGAGAGCATACT--CTTCGTTTATACAACTTGT 1279
Query 1475 GCTTAAAACCATATCA-ACATTAGAGTTGATTGTCGCAAGGTTGGAAGGTTATATCAAAG 1533
|||||||||| | | ||||||||| ||| |||| || ||| ||| |||| | | ||
Sbjct 1280 TCTTAAAACCACAG-AGACATTAGAGAAGATGGTCGTAATGTTAGAACCTTATTTTATAG 1338
Query 1534 GAAGACGT-TT-TGTA-GAGTTGCGTCAGATGGTTCCAATGCTTCCTCGCAACAACGATG 1590
|| | || || || | ||||||| | ||||| ||||| ||||| ||||||||| | |||
Sbjct 1339 CAAAAGGTGTTATGAAAGAGTTGCTTGAGATGATTCCATTGCTTACTCGCAACATCAATG 1398
Query 1591 TCTCCATTGTG 1601
|||||||||||
Sbjct 1399 TCTCCATTGTG 1409
> Ahg914056 jgi|Araly1|914056|Al_scaffold_0001_4310
Length=738
Score = 63.9 bits (34), Expect = 4e-09
Identities = 38/40 (95%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 576 TGGATCAACTTCGCCATGTCCCGAAACGTGGAGAATCTGT 615
|||||| | |||||||||||||||||||||||||||||||
Sbjct 331 TGGATCGAGTTCGCCATGTCCCGAAACGTGGAGAATCTGT 370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64981957970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5