BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G03400.1

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927854 jgi|Araly1|927854|scaffold_300311.1                        610    2e-174


> Ahg927854 jgi|Araly1|927854|scaffold_300311.1
Length=488

 Score =  610 bits (330),  Expect = 2e-174
 Identities = 385/412 (93%), Gaps = 1/412 (0%)
 Strand=Plus/Plus

Query  3    GAATAATATGTCTTTAAGTGATATCTTCGAGAGGTTTGACACGAGCAAAGATGGTAAGAT  62
            |||||| |||||  ||||||| ||||||||||||||||||| || |||||| ||||||||
Sbjct  29   GAATAACATGTCGATAAGTGAAATCTTCGAGAGGTTTGACAAGAACAAAGACGGTAAGAT  88

Query  63   CTCTTGGGAAGAGTTTCGTGACGCGATTCATGCTCTCTCTCCATCTATCCCTTCAGAAAA  122
            ||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct  89   CTCATGGGAAGAGTTTCGTGACGCGATTCATGCTCTCTCTCCAGCTATTCCTTCAGACAA  148

Query  123  ACTCGTCGAGATGTTCATCCAGCTTGACACGAATGGAGATGGTCAGGTCGATGCGGCCAA  182
            ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct  149  ACTGGTCGAGATGTTCATCCAGCTTGACACGAACGGAGATGGTCAGCTCGATGCGGCCGA  208

Query  183  ATTCGCTTCGTGCATGGACCAAACAGCTCAGTCTAGTGGTGGTGACGTGGAAAAAGAGTT  242
            |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct  209  ATTCGCTTCGTGTATGGACCAAACTGCTCAGTCTAGTGGTGGCGACGTGGAAAAAGAGTT  268

Query  243  GAAGGATGCTTTTAAACTATACGATATTAATTGTGATGGGAAGATATCGGCCAATGAGTT  302
            ||||||||| || |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct  269  GAAGGATGCGTTCAAACTATATGATATTGATTGTGATGGGAAGATATCGGCCAATGAGTT  328

Query  303  ACATGTGGTGATGACTCGGCTTGGAGAGAAGTGTACGGTCGAGAGCTGCGTAGGGATGGT  362
            ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct  329  ACATGTGGTGATGACTCGGCTCGGAGAGAAGTGTACGGTTGAGAGCTGCGTAGGGATGGT  388

Query  363  TCAAGCTATCGATGTAGATGGTGATGGTTATATTAGATTCGTAGGAGTTTAA  414
            |||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct  389  TCAAGCTATCGATGTAGATGGTGATGGTTATATTAGCTTTG-AGGAGTTTAA  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14880679710


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5