BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03400.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value Ahg927854 jgi|Araly1|927854|scaffold_300311.1 610 2e-174 > Ahg927854 jgi|Araly1|927854|scaffold_300311.1 Length=488 Score = 610 bits (330), Expect = 2e-174 Identities = 385/412 (93%), Gaps = 1/412 (0%) Strand=Plus/Plus Query 3 GAATAATATGTCTTTAAGTGATATCTTCGAGAGGTTTGACACGAGCAAAGATGGTAAGAT 62 |||||| ||||| ||||||| ||||||||||||||||||| || |||||| |||||||| Sbjct 29 GAATAACATGTCGATAAGTGAAATCTTCGAGAGGTTTGACAAGAACAAAGACGGTAAGAT 88 Query 63 CTCTTGGGAAGAGTTTCGTGACGCGATTCATGCTCTCTCTCCATCTATCCCTTCAGAAAA 122 ||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| || Sbjct 89 CTCATGGGAAGAGTTTCGTGACGCGATTCATGCTCTCTCTCCAGCTATTCCTTCAGACAA 148 Query 123 ACTCGTCGAGATGTTCATCCAGCTTGACACGAATGGAGATGGTCAGGTCGATGCGGCCAA 182 ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | Sbjct 149 ACTGGTCGAGATGTTCATCCAGCTTGACACGAACGGAGATGGTCAGCTCGATGCGGCCGA 208 Query 183 ATTCGCTTCGTGCATGGACCAAACAGCTCAGTCTAGTGGTGGTGACGTGGAAAAAGAGTT 242 |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 209 ATTCGCTTCGTGTATGGACCAAACTGCTCAGTCTAGTGGTGGCGACGTGGAAAAAGAGTT 268 Query 243 GAAGGATGCTTTTAAACTATACGATATTAATTGTGATGGGAAGATATCGGCCAATGAGTT 302 ||||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 269 GAAGGATGCGTTCAAACTATATGATATTGATTGTGATGGGAAGATATCGGCCAATGAGTT 328 Query 303 ACATGTGGTGATGACTCGGCTTGGAGAGAAGTGTACGGTCGAGAGCTGCGTAGGGATGGT 362 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 329 ACATGTGGTGATGACTCGGCTCGGAGAGAAGTGTACGGTTGAGAGCTGCGTAGGGATGGT 388 Query 363 TCAAGCTATCGATGTAGATGGTGATGGTTATATTAGATTCGTAGGAGTTTAA 414 |||||||||||||||||||||||||||||||||||| || | |||||||||| Sbjct 389 TCAAGCTATCGATGTAGATGGTGATGGTTATATTAGCTTTG-AGGAGTTTAA 439 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14880679710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5