BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03405.1
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317222 jgi|Araly1|317222|fgenesh1_pm.C_scaffold_3000238 403 6e-112
Ahg930412 jgi|Araly1|930412|scaffold_302869.1 56.5 2e-07
> Ahg317222 jgi|Araly1|317222|fgenesh1_pm.C_scaffold_3000238
Length=639
Score = 403 bits (218), Expect = 6e-112
Identities = 468/580 (81%), Gaps = 52/580 (9%)
Strand=Plus/Plus
Query 1 ATGACGACGATCTCAGATCTTCCAAAGGAATTGGTAGAGGAGATTATCTCTGGGGTTCCT 60
|||||||||||||||||||| || |||||||||||| |||||||||||||| |||||||
Sbjct 1 ATGACGACGATCTCAGATCTCCCGAAGGAATTGGTAAAGGAGATTATCTCTCGGGTTCCA 60
Query 61 ACGAAAT-TGATGAGAG-C---AG-TT--C--G------A-GG-A-GAC---AATACTAG 98
| ||||| | ||||||| | | || | | | || | || ||||||||
Sbjct 61 ATGAAATCT-ATGAGAGCCGTTCGATTCACTTGCAAAAAATGGAACCACAATAATACTAG 119
Query 99 GCTTGTGGTTTGGAATCCTTATAT-CGGGCAAACAA-G--G-TCG-A-TC----A----- 142
|||||||||||||||||| ||| | ||||||||||| | | ||| | || |
Sbjct 120 GCTTGTGGTTTGGAATCCGTAT-TGCGGGCAAACAAGGTTGATCGAACTCAGGTATTCTT 178
Query 143 A-A-CT-CGTGAAGGGATGGGACACGTGCAGTTACGCTTTCGGATGCTTGGAGAAGAATA 199
| | || |||||||| ||| ||||||||||||||||||||||||| | |||||||||| |
Sbjct 179 ACATCTCCGTGAAGGAATGTGACACGTGCAGTTACGCTTTCGGATACGTGGAGAAGAAGA 238
Query 200 AAAAATCTTGTCGTAGCCACAAAATCTTGAGGTTTTTAGATGATGACACACTTTACAACG 259
| ||||||||||||| ||||||||||||||||||| |||| ||||| || ||||||||
Sbjct 239 ACAAATCTTGTCGTAACCACAAAATCTTGAGGTTTACAGATAATGACGGACGTTACAACG 298
Query 260 GAAGAGACAACTTTAGATTCAAGTTCTTGAAAGTGAATACGGGACCTGAAGTTTCATTAG 319
|||||||||||||| || ||| ||||||| ||| ||||||||||||||| ||| ||||
Sbjct 299 AAAGAGACAACTTTATATGCAAATTCTTGACAGTAAATACGGGACCTGAAATTTTATTAA 358
Query 320 TACTTGAGAGTTTCATCATTGACGAAGAGAAGAAAGTCGTCATGGTTAGTGAGGGTTTTA 379
| |||||||||||||||||||||| ||||||||||||| | ||||| | || |
Sbjct 359 CAATTGAGAGTTTCATCATTGACGAGGAGAAGAAAGTCGCCTTGGTT--T--TGG--ATG 412
Query 380 AACACCGAATATCTTACATTCTTGGAGAGAATGGATACTTAAGAGAATTGGATCTAGGAG 439
| || | | || |||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 413 ACCA-C--ACATTTTACATTCTTGGAGAGGCTGGATACTTAAGAGAATGGGATCTCGGAG 469
Query 440 AATCTATCTACACAAACTGTTGGACACAAGCGTGCTCTTATGTTCCAAGTTTAGTGCAAC 499
|| || | ||| ||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 470 AACCTGCCCACAAAAAGTGTTCCACACAAATGTGCTCTTATGTTCCAAGTTTAGTGCAAA 529
Query 500 TCAAGCAACCAGCAGGAGGCAAAAGGAAACTACAAAGCAG 539
|||||| |||||||||| |||||| |||||||||||||||
Sbjct 530 TCAAGCGACCAGCAGGAAGCAAAAAGAAACTACAAAGCAG 569
Score = 65.8 bits (35), Expect = 3e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 545 TGAGACTTGTCGCACTTGATAAGCGAATCAATAAGTAA 582
||||||||||||||||||||||||||||||| ||||||
Sbjct 602 TGAGACTTGTCGCACTTGATAAGCGAATCAAAAAGTAA 639
> Ahg930412 jgi|Araly1|930412|scaffold_302869.1
Length=665
Score = 56.5 bits (30), Expect = 2e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 471 GTGCTCTTATGTTCCAAGTTTAGTGCAACTCAA 503
|||||||||||||||||||||||||||| ||||
Sbjct 573 GTGCTCTTATGTTCCAAGTTTAGTGCAAATCAA 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21290818662
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5