BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03410.1 Length=396 Score E Sequences producing significant alignments: (Bits) Value Ahg927856 jgi|Araly1|927856|scaffold_300313.1 621 1e-177 > Ahg927856 jgi|Araly1|927856|scaffold_300313.1 Length=436 Score = 621 bits (336), Expect = 1e-177 Identities = 377/397 (95%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 1 ATGTCTGCAAAACGTGTCTTCGAGAAGTTCGATAAGAACAAAGACGGTAAACT-ATCATT 59 |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| Sbjct 21 ATGTCTGCAAAACGTGTCTTCGAGAAGTTCGATAAGAACAAAGATGGTAAACTCA-CATT 79 Query 60 AGACGAGTTTCGTGAAGTGGCTCTTGCGTTCTCTCCTTACTTTACTCAGGAAGATATCGT 119 ||||||||||||||||| |||| |||| |||||||| ||||||||||||| |||||||| Sbjct 80 AGACGAGTTTCGTGAAGCGGCTTTTGCTTTCTCTCCAAACTTTACTCAGGATGATATCGT 139 Query 120 AAAGTTTTTCGAAGAGATCGACGTGGACGGTAACGGCGAGCTAAACGCCGACGAGTTTAC 179 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 140 AAAGTTTTTCGAAGAGATCGACGTGGACGGTAACGGCGAGCTAAACGCCGAGGAGTTTAC 199 Query 180 TTCGTGCATTGAGAAAATGTTGAAGGAAGTGTTTGTTTTCTGTGATGTTGACGGTGACGG 239 |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 200 GTCGTGCATTGAGAAGATGTTGAAGGAAGTGTTTGTTTTTTGTGATGTTGACGGTGACGG 259 Query 240 GAAGATACCAGCCAGCGAGTCCTATGTGACTATGACTAGCCTCGGAAAGAAATTCACCGA 299 ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 260 GAAGATACCGGCCAGTGAGTCCTATGTGACTATGACTAGCCTCGGGAAGAAATGCACCGA 319 Query 300 GGAGACTTCTGCCGAAAAGGTCCGAGCGGCGGATGTCGATGGTGATGGCTATTTGAACTT 359 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 320 GGAGACTTGTGCCGAAAAGGTCCGAGCGGCGGATGTAGATGGTGATGGCTATTTGAACTT 379 Query 360 TGACGAGTTTATGGCTTTGGTTATTGGTGACATATAA 396 ||||||||||||| ||||||||||||||||||||||| Sbjct 380 TGACGAGTTTATGTCTTTGGTTATTGGTGACATATAA 416 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14193879108 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5