BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G03410.1

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927856 jgi|Araly1|927856|scaffold_300313.1                        621    1e-177


> Ahg927856 jgi|Araly1|927856|scaffold_300313.1
Length=436

 Score =  621 bits (336),  Expect = 1e-177
 Identities = 377/397 (95%), Gaps = 2/397 (1%)
 Strand=Plus/Plus

Query  1    ATGTCTGCAAAACGTGTCTTCGAGAAGTTCGATAAGAACAAAGACGGTAAACT-ATCATT  59
            |||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct  21   ATGTCTGCAAAACGTGTCTTCGAGAAGTTCGATAAGAACAAAGATGGTAAACTCA-CATT  79

Query  60   AGACGAGTTTCGTGAAGTGGCTCTTGCGTTCTCTCCTTACTTTACTCAGGAAGATATCGT  119
            ||||||||||||||||| |||| |||| ||||||||  ||||||||||||| ||||||||
Sbjct  80   AGACGAGTTTCGTGAAGCGGCTTTTGCTTTCTCTCCAAACTTTACTCAGGATGATATCGT  139

Query  120  AAAGTTTTTCGAAGAGATCGACGTGGACGGTAACGGCGAGCTAAACGCCGACGAGTTTAC  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  140  AAAGTTTTTCGAAGAGATCGACGTGGACGGTAACGGCGAGCTAAACGCCGAGGAGTTTAC  199

Query  180  TTCGTGCATTGAGAAAATGTTGAAGGAAGTGTTTGTTTTCTGTGATGTTGACGGTGACGG  239
             |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  200  GTCGTGCATTGAGAAGATGTTGAAGGAAGTGTTTGTTTTTTGTGATGTTGACGGTGACGG  259

Query  240  GAAGATACCAGCCAGCGAGTCCTATGTGACTATGACTAGCCTCGGAAAGAAATTCACCGA  299
            ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct  260  GAAGATACCGGCCAGTGAGTCCTATGTGACTATGACTAGCCTCGGGAAGAAATGCACCGA  319

Query  300  GGAGACTTCTGCCGAAAAGGTCCGAGCGGCGGATGTCGATGGTGATGGCTATTTGAACTT  359
            |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  320  GGAGACTTGTGCCGAAAAGGTCCGAGCGGCGGATGTAGATGGTGATGGCTATTTGAACTT  379

Query  360  TGACGAGTTTATGGCTTTGGTTATTGGTGACATATAA  396
            ||||||||||||| |||||||||||||||||||||||
Sbjct  380  TGACGAGTTTATGTCTTTGGTTATTGGTGACATATAA  416



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14193879108


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5