BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03420.1
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477588 jgi|Araly1|477588|fgenesh2_kg.3__289__AT3G03420.1 1290 0.0
> Ahg477588 jgi|Araly1|477588|fgenesh2_kg.3__289__AT3G03420.1
Length=931
Score = 1290 bits (698), Expect = 0.0
Identities = 898/984 (91%), Gaps = 56/984 (6%)
Strand=Plus/Plus
Query 44 GCCGTCAAAATCGATTCAAAGCGAACCAGAGATTGAATGGAAGATGCAGCTGCTCCGAAT 103
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1 GCCGTCAAAATCGATTCAAAGCAAACCGGAGATTGAATGGAAGATGCAGCTGCTCCGAAT 60
Query 104 TCAGGATCCGAATTTAATCCAGGAGCAAGACGCGGCAAATCTATCGATGAATGCCAAGAC 163
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGGATCCGAATTTAACCCAGGAGCAAGACGCGGCAAATCTATCGATGAATGCCAAGAC 120
Query 164 ATGATTCGTAGGAGTTTCCGAAACCCAATAGTGAAGTTTCTGATGGAGCAAATGGAGAAA 223
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 121 ATGATTCGTAGGAGTTTCCGAAACCCAATTGTGAAGTTTCTCATGGAGCAAATGGAGAAA 180
Query 224 TCTGGGTGTAGAGTTGGTGATAATTTCGTTAAGGCTGTTGTTTGTACTGGACCTGTAGCT 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTGGGTGTAGAGTTGGTGATAATTTCGTTAAGGCTGTTGTTTGTACTGGACCTGTAGCT 240
Query 284 GGAGGTTACACTAAAGGAAGAGGGATAACTGTCTGCAGTAACTATCTGACCATTCAAGAT 343
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 241 GGAGGTTACACTAAAGGAAGAGGGATTACTGTCTGCAGTAACTATTTGACCATTCAAGAT 300
Query 344 GAAGTGAACCAAGTAGTTATACATGAGTTGATTCATGCTTATGACGAGTGCCGAGCCAAG 403
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 GAAGTGAACCAAGTAGTTATACATGAGTTGATTCATGCTTATGACGAATGCCGAGCCAAG 360
Query 404 AATTTGGATTGGACTAATTGTGCTCATCATGCTTGCAGCGAG---ATTCGTGCAGGTCAT 460
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AATTTGGATTGGACTAATTGTGCTCATCATGCTTGCAGCGAGGTGATTCGTGCAGGTCAT 420
Query 461 CTAAGCGGTGATTGCCATTTCAAGAGAGAACTTTTGCGCGGTTTCATTAAATTAAGAGGG 520
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CTAAGCGGCGATTGCCATTTCAAGAGAGAACTTTTGCGGGGTTTCATTAAATTAAGAGGG 480
Query 521 CATGAACAAGAATGTATAAAAAGAAGAGTGTTGAAATCACTTCGTGGCAACCCGTATTGC 580
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 CATGAACAAGAATGTATAAAAAGAAGAGTGTTGAAATCGCTTCGTGGCAACCCGTATTGC 540
Query 581 TCGGAAGTAGCTGCTAAAGACGCGATGGAAGCAGTGTGGGATACTTGTTACAATGACACT 640
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCGGAAGTAGCTGCTAAAGATGCGATGGAAGCAGTGTGGGATACTTGTTACAATGACACT 600
Query 641 AAGCCTTTTGATAGAGCTCCTTGAAGGTAATAAGTCTATTTACACTCTCAAAAGACTTAT 700
|| |||||||||||||||||||||||||| ||||||||||| | | |||
Sbjct 601 AAACCTTTTGATAGAGCTCCTTGAAGGTAGTAAGTCTATTT----T-------G-CTT-- 646
Query 701 GTTTGCTTCAAAGTTATGAGTTCAACTTCATCTTTGAAGATCGACATAAAGCCAGaaaaa 760
| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 647 -----C---AAAGTTATGTGTTCAACTTCATCTTTGAAGATCGATATAAAGCCGGAAAAA 698
Query 761 aaaCTGTTGGATTCAGCCGTTGATTATCCCCCCATGTATTTCTCTCAATCCAACCTTTTT 820
| ||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||
Sbjct 699 A--CTGTTGGATTCAGCCATTGATTTTTTCCCCATGTATTTCTCACAATCCAACCTTTTT 756
Query 821 GGCCAAGTCAAACGATAGAGTATTTGTTTAGATTCTTTACATTGTTGTTTGAAACAAAGG 880
|||| ||| ||||||||| ||||||||||||||||||| ||||||||| || |||||
Sbjct 757 GGCCCAGTTAAACGATAG--TATTTGTTTAGATTCTTTATATTGTTGTTGGATACAAA-- 812
Query 881 AAAAGGTCTAATACACAATCTTGATTTCAAGTGGATTTTGCTTGAAAGTATAATTTTGAT 940
|| | | | | ||||||||||||||||||||||||||||||||||||||
Sbjct 813 AA----T-T--T------T---GATTTCAAGTGGATTTTGCTTGAAAGTATAATTTTGAT 856
Query 941 TTATGGATTTGTATTTTACATCACACTCTGGAGTCTGGAGGGATAAGTAGCTCTGAATCT 1000
| ||||||||||||||||||||||||| ||| | | | ||||||||||||||||||
Sbjct 857 TAATGGATTTGTATTTTACATCACACT--GGA-T--G-A---ATAAGTAGCTCTGAATCT 907
Query 1001 AACAGTGTAATAGAAAGTTGATAC 1024
||||||| ||||||||||||||||
Sbjct 908 AACAGTGCAATAGAAAGTTGATAC 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38961621174
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5