BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03420.1 Length=1047 Score E Sequences producing significant alignments: (Bits) Value Ahg477588 jgi|Araly1|477588|fgenesh2_kg.3__289__AT3G03420.1 1290 0.0 > Ahg477588 jgi|Araly1|477588|fgenesh2_kg.3__289__AT3G03420.1 Length=931 Score = 1290 bits (698), Expect = 0.0 Identities = 898/984 (91%), Gaps = 56/984 (6%) Strand=Plus/Plus Query 44 GCCGTCAAAATCGATTCAAAGCGAACCAGAGATTGAATGGAAGATGCAGCTGCTCCGAAT 103 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 1 GCCGTCAAAATCGATTCAAAGCAAACCGGAGATTGAATGGAAGATGCAGCTGCTCCGAAT 60 Query 104 TCAGGATCCGAATTTAATCCAGGAGCAAGACGCGGCAAATCTATCGATGAATGCCAAGAC 163 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTGGATCCGAATTTAACCCAGGAGCAAGACGCGGCAAATCTATCGATGAATGCCAAGAC 120 Query 164 ATGATTCGTAGGAGTTTCCGAAACCCAATAGTGAAGTTTCTGATGGAGCAAATGGAGAAA 223 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 121 ATGATTCGTAGGAGTTTCCGAAACCCAATTGTGAAGTTTCTCATGGAGCAAATGGAGAAA 180 Query 224 TCTGGGTGTAGAGTTGGTGATAATTTCGTTAAGGCTGTTGTTTGTACTGGACCTGTAGCT 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTGGGTGTAGAGTTGGTGATAATTTCGTTAAGGCTGTTGTTTGTACTGGACCTGTAGCT 240 Query 284 GGAGGTTACACTAAAGGAAGAGGGATAACTGTCTGCAGTAACTATCTGACCATTCAAGAT 343 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 241 GGAGGTTACACTAAAGGAAGAGGGATTACTGTCTGCAGTAACTATTTGACCATTCAAGAT 300 Query 344 GAAGTGAACCAAGTAGTTATACATGAGTTGATTCATGCTTATGACGAGTGCCGAGCCAAG 403 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 301 GAAGTGAACCAAGTAGTTATACATGAGTTGATTCATGCTTATGACGAATGCCGAGCCAAG 360 Query 404 AATTTGGATTGGACTAATTGTGCTCATCATGCTTGCAGCGAG---ATTCGTGCAGGTCAT 460 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 361 AATTTGGATTGGACTAATTGTGCTCATCATGCTTGCAGCGAGGTGATTCGTGCAGGTCAT 420 Query 461 CTAAGCGGTGATTGCCATTTCAAGAGAGAACTTTTGCGCGGTTTCATTAAATTAAGAGGG 520 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 421 CTAAGCGGCGATTGCCATTTCAAGAGAGAACTTTTGCGGGGTTTCATTAAATTAAGAGGG 480 Query 521 CATGAACAAGAATGTATAAAAAGAAGAGTGTTGAAATCACTTCGTGGCAACCCGTATTGC 580 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 481 CATGAACAAGAATGTATAAAAAGAAGAGTGTTGAAATCGCTTCGTGGCAACCCGTATTGC 540 Query 581 TCGGAAGTAGCTGCTAAAGACGCGATGGAAGCAGTGTGGGATACTTGTTACAATGACACT 640 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 541 TCGGAAGTAGCTGCTAAAGATGCGATGGAAGCAGTGTGGGATACTTGTTACAATGACACT 600 Query 641 AAGCCTTTTGATAGAGCTCCTTGAAGGTAATAAGTCTATTTACACTCTCAAAAGACTTAT 700 || |||||||||||||||||||||||||| ||||||||||| | | ||| Sbjct 601 AAACCTTTTGATAGAGCTCCTTGAAGGTAGTAAGTCTATTT----T-------G-CTT-- 646 Query 701 GTTTGCTTCAAAGTTATGAGTTCAACTTCATCTTTGAAGATCGACATAAAGCCAGaaaaa 760 | ||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct 647 -----C---AAAGTTATGTGTTCAACTTCATCTTTGAAGATCGATATAAAGCCGGAAAAA 698 Query 761 aaaCTGTTGGATTCAGCCGTTGATTATCCCCCCATGTATTTCTCTCAATCCAACCTTTTT 820 | ||||||||||||||| |||||| | ||||||||||||||| ||||||||||||||| Sbjct 699 A--CTGTTGGATTCAGCCATTGATTTTTTCCCCATGTATTTCTCACAATCCAACCTTTTT 756 Query 821 GGCCAAGTCAAACGATAGAGTATTTGTTTAGATTCTTTACATTGTTGTTTGAAACAAAGG 880 |||| ||| ||||||||| ||||||||||||||||||| ||||||||| || ||||| Sbjct 757 GGCCCAGTTAAACGATAG--TATTTGTTTAGATTCTTTATATTGTTGTTGGATACAAA-- 812 Query 881 AAAAGGTCTAATACACAATCTTGATTTCAAGTGGATTTTGCTTGAAAGTATAATTTTGAT 940 || | | | | |||||||||||||||||||||||||||||||||||||| Sbjct 813 AA----T-T--T------T---GATTTCAAGTGGATTTTGCTTGAAAGTATAATTTTGAT 856 Query 941 TTATGGATTTGTATTTTACATCACACTCTGGAGTCTGGAGGGATAAGTAGCTCTGAATCT 1000 | ||||||||||||||||||||||||| ||| | | | |||||||||||||||||| Sbjct 857 TAATGGATTTGTATTTTACATCACACT--GGA-T--G-A---ATAAGTAGCTCTGAATCT 907 Query 1001 AACAGTGTAATAGAAAGTTGATAC 1024 ||||||| |||||||||||||||| Sbjct 908 AACAGTGCAATAGAAAGTTGATAC 931 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38961621174 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5