BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03430.1 Length=260 Score E Sequences producing significant alignments: (Bits) Value Ahg927858 jgi|Araly1|927858|scaffold_300315.1 436 3e-122 > Ahg927858 jgi|Araly1|927858|scaffold_300315.1 Length=292 Score = 436 bits (236), Expect = 3e-122 Identities = 253/261 (97%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 1 TACAAACAATGGCTGACGCAACAGAAAAAGCTGAGCATGACCGTATTTTCAAGAAATTTG 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 13 TACAAACAATGGCTGATGCAACAGAAAAAGCTGAGCATGACCGTATTTTCAAGAAATTTG 72 Query 61 ATGCTAATGGAGATGGAAAAATCTCAGCGGCCGAGCTTGGAGATGCTCTCAAGAACCTTG 120 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 73 ATGCTAATGGAGATGGAAAAATCTCTGCGGCCGAGCTTGGAGATGCTCTGAAGAACCTTG 132 Query 121 GCTCGGTCACACACGAGGACATTAAGCGTATGATGGCAGAGATTGATACCGATGGCGATG 180 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 133 GCTCGGTCACACACGAGGACATTAAGCGTATGATGGCCGAGATTGATACCGATGGCGATG 192 Query 181 GATACATCTCGTACCAAGAATTCAT-TGATTTCGCAAGTGCCAATCGTGGTCTTATGAAA 239 |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 193 GATACATCTCGTACCAAGAATTT-TCTGATTTCGCAAGTGCCAATCGTGGTCTTATGAAA 251 Query 240 GACGTTGCCAAGATTTTCTAA 260 ||||| ||||||||||||||| Sbjct 252 GACGTCGCCAAGATTTTCTAA 272 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9050617857 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5