BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03430.1
Length=260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927858 jgi|Araly1|927858|scaffold_300315.1 436 3e-122
> Ahg927858 jgi|Araly1|927858|scaffold_300315.1
Length=292
Score = 436 bits (236), Expect = 3e-122
Identities = 253/261 (97%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 1 TACAAACAATGGCTGACGCAACAGAAAAAGCTGAGCATGACCGTATTTTCAAGAAATTTG 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 TACAAACAATGGCTGATGCAACAGAAAAAGCTGAGCATGACCGTATTTTCAAGAAATTTG 72
Query 61 ATGCTAATGGAGATGGAAAAATCTCAGCGGCCGAGCTTGGAGATGCTCTCAAGAACCTTG 120
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 73 ATGCTAATGGAGATGGAAAAATCTCTGCGGCCGAGCTTGGAGATGCTCTGAAGAACCTTG 132
Query 121 GCTCGGTCACACACGAGGACATTAAGCGTATGATGGCAGAGATTGATACCGATGGCGATG 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 133 GCTCGGTCACACACGAGGACATTAAGCGTATGATGGCCGAGATTGATACCGATGGCGATG 192
Query 181 GATACATCTCGTACCAAGAATTCAT-TGATTTCGCAAGTGCCAATCGTGGTCTTATGAAA 239
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 193 GATACATCTCGTACCAAGAATTT-TCTGATTTCGCAAGTGCCAATCGTGGTCTTATGAAA 251
Query 240 GACGTTGCCAAGATTTTCTAA 260
||||| |||||||||||||||
Sbjct 252 GACGTCGCCAAGATTTTCTAA 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9050617857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5