BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03440.1
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477590 jgi|Araly1|477590|fgenesh2_kg.3__291__AT3G03440.1 2348 0.0
> Ahg477590 jgi|Araly1|477590|fgenesh2_kg.3__291__AT3G03440.1
Length=1533
Score = 2348 bits (1271), Expect = 0.0
Identities = 1458/1547 (94%), Gaps = 18/1547 (1%)
Strand=Plus/Plus
Query 16 tctctttctctttctctttctcaagcagatcttttcttctttctcCTGAAATGGACCTCG 75
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCTTTCTCTTTCTC-AGCAGATCTTTTCTTCTTTCTCCTGAAATGGACCTCG 59
Query 76 CCGGAGAAACAAACAGCCTTATCTCCACCGTCGCTTCTTCTTCTTCCTGTTCTTCCTCCG 135
||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 60 CCGGAGAAACAAACAGCCTTATCTCCACCGTCGCTTCTTTTTCTTCTTCTTCTTCCTCCG 119
Query 136 TGTCGTCAATCGACACAAGCCTCGATTGCGATTCGCCACGTGGCGGAGATGTAGACCACG 195
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTCATCAATCGACACAAGCCTCGATTGCGATTCGCCACGTGGCGGAGATGTAGACCACG 179
Query 196 AATTGCTCCACACGGCGGTTTCGGTTTC-TTCGTCGGTGTCGGTTTCTTCGTCTTCTTCT 254
||||||||||| |||||||||| || | |||||| |||||||||||||||||||||
Sbjct 180 AATTGCTCCACTCGGCGGTTTCTCCGTCGGT-GTCGGTTTCGGTTTCTTCGTCTTCTTCT 238
Query 255 GCTTCAATCCAGAGAGTTCTGAGCTTAATCCGATCGGAGGAT-TGCGATTCGAGGCTGTT 313
||||||||||||||||| ||||| |||||| |||| |||||| | |||||||||| ||||
Sbjct 239 GCTTCAATCCAGAGAGTACTGAGTTTAATCAGATCAGAGGATCT-CGATTCGAGGTTGTT 297
Query 314 TGCTGCTAAAGAGATCCGTCGGCTGACAAAGACGTCTCATAGGTGCCGCCGACACTTTTC 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGCTGCTAAAGAGATCCGTCGGCTGACAAAGACGTCTCATAGGTGCCGCCGACACTTTTC 357
Query 374 CCAAGCCGTGGAACCTCTCGTTTCTATGCTCCGATTTGATTCGCCTGAATCTCACCACGA 433
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 CCAAGCCGTGGAACCGCTCGTTTCTATGCTCCGATTTGATTCGCCTGAATCTCACCATGA 417
Query 434 GGCTGCTTTACTCGCTCTCCTTAACCTCGCCGTCAAAGACGAAAAGAATAAAGTGAGTAT 493
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGCTGCTTTACTTGCTCTCCTTAACCTCGCCGTCAAAGACGAAAAGAATAAAGTGAGTAT 477
Query 494 AATTGAAGCCGGTGCTTTAGAGCCAATCATCAACTTCTTACAATCAAATAGCCCAACACT 553
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AATTGAAGCTGGTGCTTTAGAGCCAATCATCAACTTCTTACAATCAAATAGCCCAACACT 537
Query 554 TCAAGAGTATGCTTCTGCATCTTTGCTCACTCTCTCCGCGTCAGCAAACAACAAACCCAT 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCAAGAGTATGCTTCTGCATCTTTGCTCACTCTCTCCGCGTCAGCAAACAACAAACCCAT 597
Query 614 CATTGGAGCTAATGGTGTGGTTCCTTTATTAGTCAAGGTCATTAAACATGGAAGCCCACA 673
||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 598 CATTGGAGCTAATGGCGTGATTCCTTTATTAGTCAAAGTCATTAAACATGGAAGCCCACA 657
Query 674 AGCTAAAGCTGATGCAGTAATGGCTCTTTCCAACCTCTCTACACTCCCCGATAACCTAAG 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 AGCTAAAGCTGATGCAGTAATGGCTCTTTCCAACCTCTCTACACTCCCCGATAACCTTAG 717
Query 734 CATGATCCTAGCAACTAAACCACTCTCACCAATACTGAATCTTCTCAAATCAAGTAAAAA 793
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CATGATCCTAGCGACTAAACCACTCTCACCAATACTGAATCTTCTCAAATCAAGTAAAAA 777
Query 794 GTCGTCGAAAACATCTGAGAAATGTTGTTCACTAATAGAGGCCTTGATGGTTTCTGGTGA 853
||| |||||||||||||||||||||||||| || ||||| ||||||| |||||||||||
Sbjct 778 GTCATCGAAAACATCTGAGAAATGTTGTTCTCTGATAGAATCCTTGATAGTTTCTGGTGA 837
Query 854 GGAGGCGAGAACAGGGTTAGTTTCTGATGAAGGAGGAGTTTTAGCGGTCGTGGAAGTTCT 913
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 838 GGATGCGAGAACAGGGTTAGTTTCAGATGAAGGAGGAGTTTTAGCGGTCGTGGAAGTTCT 897
Query 914 TGAAAACGGGTCATTACAAGCTCGGGAACATGCCGTTGGCGTGCTTTTAACGCTCTGCCA 973
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 898 TGAAAACGGGTCATTGCAAGCTCGGGAACATGCGGTTGGCGTACTTTTAACGCTCTGCCA 957
Query 974 AAGCGATAGGAGTAAATACAGAGAGCCAATTCTTAGAGAAGGTGTAATACCGGGACTGCT 1033
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 958 AAGTGATAGGAGTAAATACAGAGAGCCAATTCTTAGAGAAGGTGTGATACCAGGACTGCT 1017
Query 1034 TGAGCTCACGGTTCAGGGGACATCGAAATCTCGGATTAAAGCTCAAAGACTTCTCTGTTT 1093
||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct 1018 TGAGCTCACGGTTCAAGGGACATCAAAATCTCGGACTAAAGCTCAGAGACTTCTCTGTTT 1077
Query 1094 ACTAAGGAACTCGGAAAGTCCGAGATCAGAGGTCCAACCCGATACAATAGAAAACATAGT 1153
||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1078 ACTAAGGGACTCAGAAAGCCCGAGATCAGAGGTTCAACCCGATACAATAGAAAACATAGT 1137
Query 1154 GTCAAGCTTAATCTCTCATATAGACGGAGATGATCAATCCGGTAAGGCAAAGAAGATGCT 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GTCAAGCTTAATCTCTCATATAGACGGAGATGATCAATCCGGTAAGGCAAAGAAGATGCT 1197
Query 1214 AGCTGAAATGGTCCAAGTTAGCATGGAAAAAAGCTTGAGACATCTACAAGAACGTGCCTC 1273
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1198 AGCTGAAATGGTGCAAGTTAGCATGGAAAAAAGCTTGAGACATCTACAAGAACGTGCTTC 1257
Query 1274 GACTCTTGTTCGTCCATAACCTGTGATCGAAAA-CCGCAATCCCTAGGTTTCTTCCAAGT 1332
||||||||| |||||||||| |||||||||||| |||||||||| ||| |||||||||
Sbjct 1258 GACTCTTGTCCGTCCATAACATGTGATCGAAAAACCGCAATCCCGAGGACTCTTCCAAGC 1317
Query 1333 ATAAAAACGGTGGTTTGACTCCGAATAAGGGTGATGAAGATTGAAGAATATATATATGCC 1392
||||| || |||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1318 ATAAAC-CG-TGGTATGTCTCCGAATAAGGGTGATTAAGATTGATGAATATATATATGCC 1375
Query 1393 AGTCCAGTTGCCGGCGCTTTGGTTCTTAGTGACTGGttttttttttttttACTCAAAAGT 1452
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1376 AGTCCAGTTGCCGGCGTTTTGGTTCTTAGTGACTGGTTTTTTTTTTCTT-ACTCAGAAGT 1434
Query 1453 GTTCATAATAAAATCATTTTGTAATTTAAAGTCTTTTTGTGTGTACATGCATTACTTATA 1512
||||||||||||| || |||||||||||| |||||||||||||||||| | |||||||
Sbjct 1435 GTTCATAATAAAAGCAATTTGTAATTTAA-GTCTTTTTGTGTGTACAT---T-ACTTATA 1489
Query 1513 GAATCGCTTTTAC-TTTaaaaaaaGGTTTCAATGATATTATTGTGCC 1558
||||||||||||| ||| | || | ||||||||||||| |||||||
Sbjct 1490 GAATCGCTTTTACATTTTACAA--G-TTTCAATGATATTGTTGTGCC 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58354255340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5