BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03450.1
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477591 jgi|Araly1|477591|fgenesh2_kg.3__292__AT3G03450.1 2748 0.0
Ahg488615 jgi|Araly1|488615|fgenesh2_kg.6__1749__AT5G17490.1 767 0.0
> Ahg477591 jgi|Araly1|477591|fgenesh2_kg.3__292__AT3G03450.1
Length=1934
Score = 2748 bits (1488), Expect = 0.0
Identities = 1765/1891 (93%), Gaps = 49/1891 (3%)
Strand=Plus/Plus
Query 170 CCACTACCAGCTTCTCGTTCCGGAGAAGGTCCTTCAATGGCGGATAAGAAGAAGGCTGAT 229
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 75 CCACCACCAGCTTCTCGTTCCGGAGAAGGTCCTTCAATGGCGGATAAGAAGAAGGCTGCT 134
Query 230 GATGACAACAACAACAGCAACATGGATGATGAGCTTCTTGCTGTTCTTGGCTACAAGGTT 289
|||| ||||| | | ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 135 GATG---ACAAC-A-A-CAACATGGATGATGAGCTTCTTGCTGTTCTTGGATACAAGGTT 188
Query 290 CGATCTTCTGAGATGGCTGAAGTAGCACAGAAGCTTGAACAACTTGAGATGGTCTTGTCT 349
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 189 CGATCTTCTGAGATGGCTGAAGTAGCACAGAAGCTTGAGCAACTTGAGATGGTCTTGTCT 248
Query 350 AATGATGATGTTGGTTCTACTGTCTTAAACGACTCTGTTCATTATAACCCATCTGATCTC 409
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 249 AATGATGATGTTGGTTCTACTGTCTTAAACGACACTGTTCATTATAACCCATCTGATCTC 308
Query 410 TCTAACTGGGTCGAGAGCATGCTTTCTGAGCTGAACAACCCGGCTTCTTCGGATCTTGAC 469
|||| |||||||||||||||||| || ||||| |||||||| |||||||||||||||||
Sbjct 309 TCTACCTGGGTCGAGAGCATGCTCTCGGAGCTTAACAACCCAACTTCTTCGGATCTTGAC 368
Query 470 ACGACCCGAAGTTGTGTGGATAGATCCGAATACGATCT-CAGAGCAATTCCGGGTCTTTC 528
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 369 CCGACCCGAAGTTGTGTGGATAGATCCGAATACGATCTGC-GAGCAATTCCGGGTCTTTC 427
Query 529 TGCGTTTCCAAAGGAAGAGGAAGTCTTTGACGAGGAAGCTAGCAGCAAGAGGATCCGACT 588
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 428 TGCGTTTCCAAAGGAAGAGGAAGTCTTTGACGAGGAAGCTAGCAGCAAAAGGATCCGACT 487
Query 589 CGGATCGTGGTGCGAATCGTC-GGACGAGTCAACTCGGTCCGTGGTGCTCGTTGACTCTC 647
|||||| ||||||||| || | || ||||||||||||||||||||| ||||||||||||
Sbjct 488 CGGATCCTGGTGCGAACCGGCTGG-TGAGTCAACTCGGTCCGTGGTGGTCGTTGACTCTC 546
Query 648 AGGAGACCGGAGTTAGACTTGTCCACGCACTAGTGGCGTGCGCTGAGGCGATTCACCAGG 707
||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||
Sbjct 547 AGGAGACCGGAGTTAGACTCGTCCACGCGCTGGTGGCGTGCGCTGAGGCGATTCAGCAGG 606
Query 708 AGAATCTCAACTTAGCTGACGCGCTGGTGAAACGCGTGGGAACACTCGCGGGTTCTCAAG 767
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 607 AGAATCTCAACTTAGCTGACGCGCTCGTGAAACGCGTGGGAACACTCGCGGCTTCTCAAG 666
Query 768 CTGGAGCTATGGGAAAAGTCGCTACGTATTTTGCTCAAGCCTTGGCTCGTCGTATTTACC 827
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 667 CTGGAGCTATGGGAAAAGTCGCTACGTATTTCGCTCAAGCTTTGGCTCGTCGTATTTACC 726
Query 828 GTGATTACACGGCGGAGACGGACGTTTGCGCGGCGGTGAACCCATCTTTCGAAGAGGTTT 887
||||||||||||||||||||||||| | | ||| | | | || || ||||||||||
Sbjct 727 GTGATTACACGGCGGAGACGGACGTCT-C-AGGC-G-G----C-TCCTTGGAAGAGGTTT 777
Query 888 TGGAGATGCACTTTTACGAGTCTTGCCCTTACCTGAAGTTCGCTCATTTCACGGCGAACC 947
|| |||||||||| ||||| |||||||||||||| || |||||||||||||||||||| |
Sbjct 778 TGCAGATGCACTTCTACGATTCTTGCCCTTACCTAAAATTCGCTCATTTCACGGCGAATC 837
Query 948 AAGCGATTCTAGAAGCTGTTACGACGGCGCGTAGAGTTCACGTCATTGATTTAGGGCTTA 1007
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 838 AAGCGATTCTAGAAGCTGTCGCGACGGCGCGTAGAGTTCACGTCATCGATTTAGGGCTTA 897
Query 1008 ATCAAGGGATGCAATGGCCTGCTTTAATGCAAGCTTTAGCTCTCCGACCCGGTGGACCTC 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 898 ATCAAGGGATGCAATGGCCTGCTTTAATGCAAGCTTTAGCTCTCCGACCCGGTGGTCCTC 957
Query 1068 CGTCGTTTCGTCTCACCGGAATCGGACCACCGCAGACGGAGAATTCAGATTCGCTTCAAC 1127
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 958 CGTCGTTTCGTCTCACCGGAATCGGACCTCCGCAGAAGGAGAATTCAGATTCGCTTCAAC 1017
Query 1128 AGTTAGGTTGGAAATTAGCTCAATTCGCTCAGAACATGGGCGTTGAATTCGAATTCAAAG 1187
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1018 AATTAGGTTGGAAATTAGCTCAATTCGCTCAAAACATGGGCGTTGAATTCGAATTCAAAG 1077
Query 1188 GCTTAGCCGCTGAGAGTTTATCGGATCTTGAACCCGAAATGTTCGAAACCCGACCCGAAT 1247
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1078 GTTTAGCCGCTGAGAGTTTATCGGATCTAGAACCCGAAATGTTCGAAACCCGACCTGATT 1137
Query 1248 CTGAAACCTTAGTGGTTAATTCGGTATTTGAGCTCCACCGGTTATTAGCCCGATCCGGTT 1307
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1138 CCGAAACCTTAGTGGTTAATTCGGTTTTTGAGCTTCACCGGTTATTAGCCCGATCCGGTT 1197
Query 1308 CAATCGAAAAGCTTCTCAATACGGTTAAAGCTATTAAACCGAGTATCGTAACGGTGGTTG 1367
|||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||||||
Sbjct 1198 CAATAGAAAAGCTTCTCAACACGGTTAAAGCTGTTAAACCGAGTATTATAACGGTGGTTG 1257
Query 1368 AGCAAGAAGCGAACCACAACGGAATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATT 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AGCAAGAAGCGAACCACAACGGAATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATT 1317
Query 1428 ACTACTCGAGCTTGTTTGACTCGCTCGAAGACAGTTATAGTTTACCGAGTCAAGACCGAG 1487
||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1318 ACTACTCGAGCCTGTTTGACTCGCTCGAAGACAGTGGTAGCTTACCGAGTCAAGACCGAG 1377
Query 1488 TTATGTCAGAAGTGTACTTAGGGAGACAGATACTCAACGTTGTTGCGGCGGAAGGGTCCG 1547
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 1378 TTATGTCAGAAGTGTACTTAGGGAGACAAATACTTAACGTTGTTGCGGCGGAAGGATCCG 1437
Query 1548 ATCGGGTCGAGCGGCACGAGACGGCTG-CACAGTGGAGGATTCGGATGAAATCCGCTGGG 1606
||||||||||||| |||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 1438 ATCGGGTCGAGCGACACGAGACGG-TGGCACAGTGGAGGATCCGGATGAAATCCGCTGGG 1496
Query 1607 TTTGACCCGATTCATCTCGGATCTAGCGCGTTTAAACAAGCGAGTATGCTTTTATCGCTT 1666
||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1497 TTTGACCCGGTTCATCTCGGATCTAGCGCGTTCAAACAAGCGAGCATGCTTTTATCACTT 1556
Query 1667 TACGCTACCGGAGATGGATACAGAGTTGAAGAAAATGACGGATGTTTAATGATAGGGTGG 1726
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1557 TACGCTACCGGAGATGGATACAGAGTTGAAGAAAATGACGGTTGTTTAATGATTGGGTGG 1616
Query 1727 CAGACGCGACCACTCATCACAACCTCGGCGTGGAAACTCGCC-----TG---AGTCGCGG 1778
|||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1617 CAGACGCGACCACTCATCACAACCTCGGCGTGGAAACTCGCCGGAGGTGGCGAGTCGCGG 1676
Query 1779 CGGTAGAGATGACTCGCCTGAAACCGGGAAAAACAATAAATGTTTTAAAAAATTAGGAAA 1838
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1677 CGGTAGAGATGACTTGCATGAAACCGGGAAAAT-AATAAATGTTTTAAAAAATTAGGAAA 1735
Query 1839 AGAGACCGTAACtttagttatgtttttactttttaacccgaagtttttgtgtgtttaacc 1898
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GGAGACCGTAACTTTAGT-ATGTTTTTACTTTTTAACCCGAAGTTTTTGTGTGTTTAACC 1794
Query 1899 tttttgcctaaatgtttacaactttatctttttGGACCTTGTGCGTATCTTTGAGAGTTA 1958
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1795 GTTTTGCCTAAATGTTTACAACTTTATCTTTTTGGACCTTGTGCGTATCTTTGAGA---A 1851
Query 1959 AGAGAACGAGTAAAAAATCTTGTATCGTAGATCGAGCTAAGTA-GTTTTCAATAAATG-G 2016
||||||||| ||||||||||||||||||||| |||| |||||||||||||| |
Sbjct 1852 ------CGAGTAAAA--TCTTGTATCGTAGATCGAGCTGAGTAAGTTTTCAATAAATGTG 1903
Query 2017 -AAGGATAA----CGATTCTGTATGTTTTTT 2042
|||||||| ||||||||||||||||||
Sbjct 1904 GAAGGATAATAAACGATTCTGTATGTTTTTT 1934
Score = 84.2 bits (45), Expect = 3e-15
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 16 AAAACCTTACCAACCCATGAAGTAAAGTAAACTCCTTTCTTATAA 60
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACCTTACCAACCCATGAAGTAAAGTAAACTCCTTTCTTATAA 45
> Ahg488615 jgi|Araly1|488615|fgenesh2_kg.6__1749__AT5G17490.1
Length=1957
Score = 767 bits (415), Expect = 0.0
Identities = 986/1251 (79%), Gaps = 81/1251 (6%)
Strand=Plus/Plus
Query 569 AGCAGCAAGAGGATCCGACTCGGAT-CGTGGTGCGAATC-GTCG-G-A-CGAGTCAACTC 623
|||| ||||||||| |||||| | | | |||| || || || | | | ||| |||||||
Sbjct 532 AGCAACAAGAGGATTCGACTC-GCTCCTTGGTATGACTCAGT-GAGCAGCGACTCAACTC 589
Query 624 GGTCCGTGGTGCTCGTTGACTCTCAGGAGACCGGAGTTAGACTTGTCCACGCACTAGTGG 683
| ||||| || | | || | || ||||||||||||| ||||| ||||| || |||||||
Sbjct 590 GTTCCGTCGT-C-C-TT-A-TC-GAGGAGACCGGAGTCAGACTCGTCCAGGCGCTAGTGG 643
Query 684 CGTGCGCTGAGGCGATTCACCAGGAGAATCTCAACTTAGCTGACGCGCTGGTGAAACGCG 743
| ||||| |||||| | || || |||||||| | | | || || || || ||||| ||||
Sbjct 644 CCTGCGCCGAGGCGGTCCAGCATGAGAATCTGAGCCTCGCGGATGCTCTCGTGAAGCGCG 703
Query 744 TGGGAACACTCGCGGGTTCTCAAGCTGGAGCTATGGGAAAAGTCGCTACGTATTTTGCTC 803
||||| ||||||||| ||||||||| ||||| ||||| |||||||| || || || || |
Sbjct 704 TGGGATCACTCGCGGCTTCTCAAGCGGGAGCGATGGGGAAAGTCGCCACCTACTTCGC-C 762
Query 804 -AAGCCTTGGCTCGTCGTATTTACCGTGATTACACGGCGGAGACGGACGTTTGCGCGGCG 862
||||| | |||||||| |||||||| |||| || | | | | || || |
Sbjct 763 GAAGCCCTAGCTCGTCGGATTTACCG-GATT-CA--TC-----C-TTCCTCCGC-CGCCA 811
Query 863 GTGAACCCAT-CTTTCGAAGAGGTT-TTGGAGATGCACTTT-TACGAGTCTTGCCCTTAC 919
|| | || | |||| |||||| || || ||||| | ||| ||||| || || ||||||
Sbjct 812 TTG-ATCCTTCCTTT-GAAGAGATTCTT-CAGATG-AATTTCTACGACTCGTGTCCTTAC 867
Query 920 CTGAAGTTCGCTCATTTCACGGCGAACCAAGCGATTCTAGAAGCTGTTACGACGGCGCGT 979
|| || |||||||||||||| || || ||||||||||||||||| ||||||||| |||||
Sbjct 868 CTCAAATTCGCTCATTTCACAGCCAATCAAGCGATTCTAGAAGCCGTTACGACGTCGCGT 927
Query 980 AGAGTTCACGTCATTGATTTAGGGCTTAATCAAGGGATGCAATGGCCTGCTTTAATGCAA 1039
| || ||||| || ||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 928 GGCGTACACGTTATCGATCTAGGGCTTAATCAAGGGATGCAATGGCCGGCGTTAATGCAA 987
Query 1040 GCTTTAGCTCTCCGACCCGGTGGACCTCCGTCGTTTCGTCTCACCGG-AATCGGACCACC 1098
|| |||||||||||||||||||| ||||||||||||||||||||||| | ||| | |
Sbjct 988 GCCTTAGCTCTCCGACCCGGTGGTCCTCCGTCGTTTCGTCTCACCGGCGTTGGGA-C-TC 1045
Query 1099 GCAGACGGAGAATTC-AGATTCGCTTCAACAGTTAGGTTGGAAATTAGCTCAATTCGCTC 1157
| | | ||| || || | ||||| ||||||||||||| ||||||| | ||||
Sbjct 1046 -C-GTC---GAA-TCGTGACGGGATTCAAGAGTTAGGTTGGAAGCTAGCTCAGCTGGCTC 1099
Query 1158 -AGAACATGGGCGTTGAATTCGAATTCAAAGGCTTAG-CCG-CTGAGAGTTTATCGGATC 1214
|| ||| ||||| |||||||| ||||| || | | || | ||||| ||||| |||
Sbjct 1100 AAG-CCATCGGCGTCGAATTCGAGTTCAATGG--TCGAACGACGGAGAGATTATCCGAT- 1155
Query 1215 TT-GAACCCG-AAATGTTCGAAACCCGACCCGAATCTGAAACCTTAGTGGTTAATTCGGT 1272
|| ||| ||| | |||||||| ||||||||||| || || || |||||||||||||||||
Sbjct 1156 TTGGAA-CCGTATATGTTCGAGACCCGACCCGAGTCGGAGACTTTAGTGGTTAATTCGGT 1214
Query 1273 ATTT-GAGCTCCA-CCGGTTATTAGCCCGATCCGGTTCAATCGAAAAGCTTCTCAAT-AC 1329
||| ||||| || |||||| ||| | | | ||||||| |||||||||| | | | | ||
Sbjct 1215 -TTTCGAGCTTCACCCGGTT-TTATCGCAACCCGGTTCGATCGAAAAGC-TGTTAGTGAC 1271
Query 1330 GGTTAAAGCTATTAAACCGAGTATCGTAACGGTGGTTGAGCAAGAAGCGAACCACAACGG 1389
|||||| || ||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1272 GGTTAAGGCGGTTAAACCGAGTATCGTAACGGTGGTGGAACAAGAAGCGAACCATAACGG 1331
Query 1390 AATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATTACTACTCGAGCTTGTTTGACTC 1449
||| ||| | || |||| ||||||||||| || || ||||||||||||||||||||
Sbjct 1332 CGCCGTTTTCTTAGACCGGTTTAACGAAGCGCTACACTATTACTCGAGCTTGTTTGACTC 1391
Query 1450 GCTCGAAGACAGT-TATAGT-TTACCGAGTCAAGACCGAGTTATGTCAGA-AGTGTACTT 1506
||||||||| || | | || |||||||||||||||||||| ||||| || | | |||||
Sbjct 1392 GCTCGAAGATGGTGT-T-GTCTTACCGAGTCAAGACCGAGTCATGTCGGAGATT-TACTT 1448
Query 1507 AGGGAGACAGATACTCAACGTTGTTGCGGCGGAAGGG-TCCGATCGGGTCGAGCGGCACG 1565
|||||||||||| | ||||| || ||||||||||| | |||||| |||||||||| |
Sbjct 1449 AGGGAGACAGATTTTGAACGTGGTGGCGGCGGAAGGAATT-GATCGGATCGAGCGGCATG 1507
Query 1566 AGACGGCTG-CACAGTGGAGGATTCGGATGAAATCCGCTGGGTTTGACCCGATTCATCTC 1624
|||| ||| | |||||| ||| |||||| ||||||| |||||||||||| || |||||
Sbjct 1508 AGACA-CTGGCTCAGTGGCGGAAACGGATGGAATCCGCCGGGTTTGACCCGGTTAATCTC 1566
Query 1625 GGATCTAG-CGCGTTTAAACAAGCGAGTATGCTTTTATCGCTT-TAC-G-CTACCGGAGA 1680
||||| || ||||||||| ||||||||| |||| || || || | | | | | |||||
Sbjct 1567 GGATC-AGACGCGTTTAAGCAAGCGAGTTTGCTATTGGCG-TTAT-CTGGCGGC-GGAGA 1622
Query 1681 TGGATACAGAGTTGAAGAAAATGACGGATGT-TTAATGATAGGGTGGCAGACGCGACCAC 1739
|||||||||||| || || || |||||| | ||| || | | |||||||||| ||| |
Sbjct 1623 TGGATACAGAGTGGAGGAGAACGACGGAAGCCTTA-TGCTTGCGTGGCAGACGAAACCGC 1681
Query 1740 TCATCACAACCTCGGCGTGGAAACTCGCC-TG-AGTCGCGGCGGTAGAGAT 1788
||||| | | |||||||||||||| || || ||| ||||||||||||||
Sbjct 1682 TCATCGCCGCATCGGCGTGGAAACTGGCGGTGGAGTTGCGGCGGTAGAGAT 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77856460780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5