BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03456.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value Ahg927861 jgi|Araly1|927861|scaffold_300318.1 172 3e-43 > Ahg927861 jgi|Araly1|927861|scaffold_300318.1 Length=196 Score = 172 bits (93), Expect = 3e-43 Identities = 99/102 (97%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 ATGAAAGTAACCTTATGTTGTGGACGTCTCGTAGGCTATGTCTTCCTCTACGTGGCACAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75 ATGAAAGTAACCTTATGTTGTGGACGTCTCGTAGGCTATGTCTTCCTCTACGTGGCACAT 134 Query 61 GAGAAGTTGCTCATGTGTCCCCCTCAAATACTTGAGCTGTAG 102 |||| ||||||||||||||||| |||||||||||||| |||| Sbjct 135 GAGAGGTTGCTCATGTGTCCCCTTCAAATACTTGAGCCGTAG 176 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 3057674640 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5