BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G03456.1

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927861 jgi|Araly1|927861|scaffold_300318.1                        172    3e-43


> Ahg927861 jgi|Araly1|927861|scaffold_300318.1
Length=196

 Score =  172 bits (93),  Expect = 3e-43
 Identities = 99/102 (97%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  1    ATGAAAGTAACCTTATGTTGTGGACGTCTCGTAGGCTATGTCTTCCTCTACGTGGCACAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  75   ATGAAAGTAACCTTATGTTGTGGACGTCTCGTAGGCTATGTCTTCCTCTACGTGGCACAT  134

Query  61   GAGAAGTTGCTCATGTGTCCCCCTCAAATACTTGAGCTGTAG  102
            |||| ||||||||||||||||| |||||||||||||| ||||
Sbjct  135  GAGAGGTTGCTCATGTGTCCCCTTCAAATACTTGAGCCGTAG  176



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 3057674640


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5