BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03460.1
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927862 jgi|Araly1|927862|scaffold_300319.1 1280 0.0
Ahg931116 jgi|Araly1|931116|scaffold_303573.1 237 2e-61
> Ahg927862 jgi|Araly1|927862|scaffold_300319.1
Length=945
Score = 1280 bits (693), Expect = 0.0
Identities = 890/978 (91%), Gaps = 42/978 (4%)
Strand=Plus/Plus
Query 182 CAGCAACAACAGGCGGCGATGTCGATGTTTCCGCCGAACGCTGACGCTCATCTCCGGCCA 241
||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 5 CAGCAGCAACAGGCGGCGATGTCGAGGTTTCCGCCGAACGCCGACGCTCATCTCCGGCCA 64
Query 242 CCGGGGTTGATTCCGAACCGACCCGTTAACCCGTTTCTTCAGAACG-TGAACCCTAACCC 300
||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 65 CCGGGTTTGATTCCGAACCGACCCGTTAACCCGTTTCTTCAGAACGCT-AACCCTAACCC 123
Query 301 TAATTTGATTCAACAAGCCAATAAATTTcagcaacagcagcagcaacagatgatgatgat 360
||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 124 TAATTTGATTCAACAAGCCAATAAATTTCAG---CA--A-CAGCAACAGATGATGATGAT 177
Query 361 gatgcaacaacaacaactacaacaacaacaacaGCAGAAATTGATGCGTCCATCGAATCA 420
|||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 178 GATG---------------CAACAACAGCAACAGCAGAAATTGATGCGTCCATCGAATCA 222
Query 421 ATTGGAGATACAATTCGCTTACCAAGACGCTTGGCGTGTTTGTCATCCTGATTTCAAACG 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 223 ATTGGAGATACAATTCGCTTACCAAGACGCTTGGCGTGTTTGCCATCCTGATTTCAAGCG 282
Query 481 ACCTTTCGCTTCTCTCGAAGACGCTTGTGAAAGATTGTTACCTTATCATGTTGTAGCAGA 540
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 283 ACCTTTCGCTTCTCTCGAAGACGCTTGTGAAAGATTGTTACCTTATCACGTCGTAGCAGA 342
Query 541 TTACGAAGCAGAAGAAGATGATAGTATCTT-TGATTCAAACACAACAAGCCAGACGCTAC 599
|||||||||||||||||||||||||||| | | ||||| ||||||||| |||| ||||||
Sbjct 343 TTACGAAGCAGAAGAAGATGATAGTATCCTCT-ATTCAGACACAACAAACCAGGCGCTAC 401
Query 600 CCCGCTGTCAGCAATGGGACAACAACATTGCAGCCAAAGTTGCAGAATTCACGGCGACAT 659
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 402 CCCGCTGTCAGCTATGGGACAACAACATTGCAGCCAAAGTCGCAGAATTCACGGCGACAT 461
Query 660 TTGAGGGACAAGTCCAAGCTTTCGACAGGATAATTCAAAAGAGAAGCGATGGAGACAGAG 719
|||||| |||||||||||||||| ||||||||| ||| |||||||| ||||| | |||||
Sbjct 462 TTGAGGAACAAGTCCAAGCTTTCAACAGGATAACTCAGAAGAGAAGGGATGGCGTCAGAG 521
Query 720 TTGAGGAAAGGCTGATGATGGAACAAGTTTTGCTC-AATGACGAGAGAAACGCATGTATC 778
|||||||| |||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 522 CTGAGGAAATGCTGATGATGGAACAATTTTTGCTCCAA-GACGAGAGAAACGCATGTATT 580
Query 779 CAGCTGGATAGGGAGATGAAAGCTCAGGATGCGAGGTTAAGAATGGCGGCTTTGGCTCAA 838
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 581 GAACTGGATAGGGAGATGAAAGCTCAGGATGCGAGGTTAAGAATGGCGGCTTTTGCTCAA 640
Query 839 GCAGCAGGACAAGCAAGGGCAGAAGAGTCTCAACAGTCTCATGCCGAGATGATGGCTCGT 898
|||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 641 GCAGCAGGACAAGCAAGGGCAGCAGATTCTCAACAATCTCATGCCGAGATGATGGCTCGT 700
Query 899 AACCCGTTGAGAGCTAATGCGATTGGGAATCATGGAGAACAGGGGCGTAACATGAACCCT 958
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 701 AACCCGTTGAGAGCTAATGCGATTGGGAATCATGGAGAACAAGGACGTAACATGAACCCT 760
Query 959 AATGAGATGATGTTGCTGATGAATGGATGGGGGAACAATAACAACAACAATAATAGCCAG 1018
|||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 761 AATGAGATGATGATGCTGATGAATGGATGGGGGAACAATAA---------TA---GCCAG 808
Query 1019 AAGGAAGAGAAGGAACCATTAGAAGATTTCTTGAATGATGAAGAAAATGAAAATGGTGAA 1078
|| ||||||||||||||| |||||||||||||||||||||| ||||||||||| || |||
Sbjct 809 AAAGAAGAGAAGGAACCACTAGAAGATTTCTTGAATGATGAGGAAAATGAAAACGGGGAA 868
Query 1079 CATGAGAAGTGGCGAAGAAGTGGGGATTTTGATTTGAATATTCGGTAA-ATGAAACCATG 1137
|||||||| |||||| ||| |||||||||||||||||||| ||||||| ||| ||||| |
Sbjct 869 CATGAGAACTGGCGACGAACTGGGGATTTTGATTTGAATACTCGGTAATATGGAACCAAG 928
Query 1138 ACTCAGA-TTTTCTTTTG 1154
||||||| |||| |||||
Sbjct 929 ACTCAGAATTTT-TTTTG 945
> Ahg931116 jgi|Araly1|931116|scaffold_303573.1
Length=437
Score = 237 bits (128), Expect = 2e-61
Identities = 130/131 (99%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 383 caacaacaacaGCAGAAATTGATGCGTCCATCGAATCAATTGGAGATACAATTCGCTTAC 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAACAACAACAGCAGAAATTGATGCGTCCATCGAATCAATTGGAGATACAATTCGCTTAC 60
Query 443 CAAGACGCTTGGCGTGTTTGTCATCCTGATTTCAAACGACCTTTCGCTTCTCTCGAAGAC 502
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CAAGACGCTTGGCGTGTTTGTCATCCTGATTTCAAGCGACCTTTCGCTTCTCTCGAAGAC 120
Query 503 GCTTGTGAAAG 513
|||||||||||
Sbjct 121 GCTTGTGAAAG 131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47005556661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5