BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03480.1
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317230 jgi|Araly1|317230|fgenesh1_pm.C_scaffold_3000246 2058 0.0
Ahg488622 jgi|Araly1|488622|fgenesh2_kg.6__1756__AT5G17540.1 259 4e-68
> Ahg317230 jgi|Araly1|317230|fgenesh1_pm.C_scaffold_3000246
Length=1362
Score = 2058 bits (1114), Expect = 0.0
Identities = 1270/1348 (94%), Gaps = 0/1348 (0%)
Strand=Plus/Plus
Query 34 ATGGACCATCAAGTGTCTCTGCCACAATCTACCACCACTGGTCTTTCTTTCAAGGTGCAT 93
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGACCATCAAGTGTCTCTGCCACAATCTACCACCACTGGTCTCTCTTTCAAGGTGCAT 60
Query 94 CGCCAGCAGCGGGAGCTAGTCACTCCGGCTAAACCAACGCCACGAGAGCTCAAGCCTCTC 153
|||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CGCCAGCAGCCGGAGCTAATCACTCCGGCTAAACCAACTCCACGAGAGCTCAAGCCTCTC 120
Query 154 TCCGACATAGACGACCAACAAGGACTAAGATTTCAAATTCCAGTTAtttttttCTATAGA 213
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TCCGACATAGATGACCAACAAGGACTAAGATTTCAAATTCCAGTTATATTTTTCTATAGA 180
Query 214 CCTAACCTTTCAAGTGATCTTGATCCGGTCCAGGTGATAAAGAAAGCCCTCGCCGATGCG 273
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CCTAACCTTTCAAGTGATCTCGATCCGGTCCAAGTGATAAAGAAAGCCCTCGCCGATGCG 240
Query 274 CTGGTTTACTACTATCCGTTCGCTGGTAGGCTCCGGGAACTTTCAAACCGGAAACTCGCG 333
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGGTTTACTACTATCCATTCGCTGGTAGGCTCCGGGAACTTTCAAACCGGAAACTCGCG 300
Query 334 GTGGACTGCACCGGTGAAGGCGTTTTGTTCATCGAGGCTGAAGCTGACGTGGCGCTTGCT 393
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 301 GTGGACTGCACCGGTGAAGGCGTTTTGTTCATCGAGGCTGAAGCTGACGTGTCGCTTACT 360
Query 394 GAGCTGGAAGAGGCTGATGCTCTTCTTCCTCCATTCCCTTTCCTAGAAGAGCTTCTCTTT 453
||| |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 361 GAGTTGGAGGAGGCTGATGCTCTTCTTCCTCCGTTCCCTTGCCTAGAAGAGCTTCTCTTT 420
Query 454 GATGTGGAAGGCTCTAGTGATGTGCTTAACACTCCTCTGCTTCTCGTCCAGGTCACGCGA 513
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 GATGTGGAAGGCTCTAGTGATGTGCTTAACACTCCTCTCCTTCTCGTCCAGGTCACGCGC 480
Query 514 TTGAAATGCTGTGGATTTATCTTCGCACTCCGCTTCAACCATACCATGACCGATGGAGCC 573
||||||||| | ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 481 TTGAAATGCAGCGGATTTATCTTTGCCCTCCGCTTCAACCATACCATGACCGATGGAGCC 540
Query 574 GGCCTGTCGCTCTTTCTGAAATCACTATGCGAGTTGGCGTGTGGGCTTCACGCACCCTCG 633
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 GGCCTGTCGCTCTTTCTGAAATCACTATGCGAGTTGGCGTGTGGGCTTCACGTGCCCTCG 600
Query 634 GTTCCACCCGTATGGAACCGACACTTGTTGACTGTGAGTGCTTCGGAGGCGCGTGTGACC 693
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTCCACCAGTATGGGACCGACACTTGTTGACTGTGAGTGCTTCGGAGGCGCGTGTGACT 660
Query 694 CACACACACCGTGAGTACGATGATCAGGTGGGAATCGATGTGGTCGCCACTGGACACCCT 753
||||||||||||||||| || || ||||||| ||||||||||||||||||||| |||||
Sbjct 661 CACACACACCGTGAGTATGAAGAACAGGTGGCCATCGATGTGGTCGCCACTGGAGACCCT 720
Query 754 TTGGTTAGCCGGTCTTTCTTTTTCAGAGCAGAAGAGATCTCCGCTATAAGGAAACTCCTT 813
|||||||||||||||||||||||||| || || ||||| ||||| ||| ||||||| |||
Sbjct 721 TTGGTTAGCCGGTCTTTCTTTTTCAGGGCGGAGGAGATTTCCGCCATACGGAAACTTCTT 780
Query 814 CCGCCTGATCTACACAATACCTCATTTGAAGCTTTGTCGTCATTTTTGTGGCGTTGTCGG 873
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 781 CCGCCCGATCTCCACAATACCTCATTTGAAGCCTTGTCGTCATTTTTGTGGCGTTGTAGG 840
Query 874 ACTATTGCGTTGAATCCTGACCCCAACACTGAGATGCGTCTAACTTGCATCATCAACTCG 933
|| ||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 841 ACAATTGCGTTGAAACCTGATCCCAACACTGAGATGCGACTAACTTGTATCATCAACTCG 900
Query 934 CGTTCCAAGCTTAGAAACCCACCGCTAGAGCCTGGTTACTACGGAAATGTGTTTGTCATT 993
|||||||||||||| |||||||| ||| ||| |||||||||||||||||||| ||||||
Sbjct 901 CGTTCCAAGCTTAGCAACCCACCACTATCGCCGGGTTACTACGGAAATGTGTTCGTCATT 960
Query 994 CCCGCGGCAATAGCGACAGCAAGAGATCTAATAGAGAAACCGCTTGAGTTTGCTTTGAGG 1053
|||||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 961 CCCGCGGCAATAGCAACAGCAAGAGATCTTATGGAGAAACCTCTTGAGTTTGCTTTGAGG 1020
Query 1054 TTGATACAAGAAACGAAGTCAAGTGTAACCGAGGACTACGTCCGTTCAGTGACCGCCCTA 1113
|||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||
Sbjct 1021 TTGATACAAGAAACGAAGTCAAGTGTGACTGAGGACTACGTCCGCTCAGTGACTGCCCTA 1080
Query 1114 ATGGCGACTAGAGGCCGGCCTATGTTTGTGGCATCAGGGAACTACATAATATCGGACTTG 1173
||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||| ||
Sbjct 1081 ATGGCCACTAGAGGCCGGCCTATGTTTGTGGCAGCGGGGAACTACATCATATCGGATTTA 1140
Query 1174 AGACATTTTGATTTAGGAAAAATTGATTTTGGACCGTGGGGTAAGCCAGTGTACGGTGGA 1233
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGACACTTTGATTTAGGAAAAGTTGATTTTGGACCGTGGGGTAAGCCAGTGTACGGTGGA 1200
Query 1234 ACCGCTAAGGCCGGTATCGCGCTTTTCCCGGGAGTGAGCTTCTACGTGCCGTTTAAGAAT 1293
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1201 ACCGCTAAGGCCGGTATCGCGCTTTTTCCAGGAGTGAGCTTCTACGTGCCGTTTAAGAAT 1260
Query 1294 AAAAAAGGTGAGACAGGTACAGTTGTGGCGATTAGCTTGCCGGTACGGGCGATGGAGACG 1353
|||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||| |
Sbjct 1261 AAAAAAGGTGAGACGGGTACCGTTGTGGCGATTAGCTTGCCGGTGCGGGCAATGGAGAGG 1320
Query 1354 TTCGTAGCAGAGCTAAATGGAGTGCTAA 1381
|||||||||||||||||||||||| |||
Sbjct 1321 TTCGTAGCAGAGCTAAATGGAGTGTTAA 1348
> Ahg488622 jgi|Araly1|488622|fgenesh2_kg.6__1756__AT5G17540.1
Length=1355
Score = 259 bits (140), Expect = 4e-68
Identities = 284/352 (81%), Gaps = 16/352 (5%)
Strand=Plus/Plus
Query 272 CGCTGGTTTACTACTATCCGTTCGCTGGTAGGCTCCGGGAACTTTCA-AACCGGAAACTC 330
|||||||||||||||| ||||| || ||||||||||||||| || |||||||||||
Sbjct 179 CGCTGGTTTACTACTACCCGTTTGCAGGTAGGCTCCGGGAA-GGACAGAACCGGAAACTT 237
Query 331 GCGGTGGACTGCACCGGTGAAGGCGTTTTGTTCATCGAGGCTGAAGCTGACGTGGCGCTT 390
|| |||||||||||||||||||||||||||||||| |||||||| ||||||||| | |||
Sbjct 238 GCCGTGGACTGCACCGGTGAAGGCGTTTTGTTCATTGAGGCTGATGCTGACGTGACACTT 297
Query 391 GCTGAGCTGGAAGAGGCTGATGCTCTTCTTCCTCCATTCCCTTTCCTAGAAGAGCTTCTC 450
| |||| | |||||| ||||||||| ||||||||||||| | | |||||||||||
Sbjct 298 GTTGAGTTTGAAGAGAAGGATGCTCTTAAGCCTCCATTCCCTTGCTTTGAAGAGCTTCTG 357
Query 451 TTTGA-TGTGGAAGGCTCTAGTGATGTGCTTAACACTCCTCTGCTTCTCGTCCAGGTCAC 509
||||| | | ||||| |||||||| |||| ||||||||| || | ||| | ||||||||
Sbjct 358 TTTGACT-TAGAAGGTTCTAGTGAAATGCTCAACACTCCTTTGATGCTCATGCAGGTCAC 416
Query 510 GCGATTGAAATGCTGTGGATTTATCTTCGCAC-TCCGCT-TCAACCA--TACCATGACCG 565
||| || |||||| | || ||||||||||| | |||| | ||||||| || ||| | |
Sbjct 417 GCGCTTAAAATGCGGCGGTTTTATCTTCGC-CGTCCG-TATCAACCACGTA--ATGTCGG 472
Query 566 ATGGAGCCGGCCTGTCGCTCTTTCTGAAATC-ACTATGCGAGTT-G-GCGTG 614
| | ||||| || ||||||||| ||| | | | |||||||| | |||||
Sbjct 473 ACGCTGCCGGTCTCAAGCTCTTTCTCAAAACGA-TGTGCGAGTTCGTGCGTG 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56221201620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5