BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03490.1
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477595 jgi|Araly1|477595|fgenesh2_kg.3__296__AT3G03490.1 1338 0.0
> Ahg477595 jgi|Araly1|477595|fgenesh2_kg.3__296__AT3G03490.1
Length=926
Score = 1338 bits (724), Expect = 0.0
Identities = 873/941 (93%), Gaps = 26/941 (3%)
Strand=Plus/Plus
Query 42 tctcctctctctctctGATATTCTTCGT-CGTCCCATCTGCGAATTGTTTACACAGAGAT 100
||| || ||||||||||||||||||| | | |||||| | ||||||||||| |||| ||
Sbjct 11 TCTTCT-TCTCTCTCTGATATTCTTCCTAC-TCCCATATTCGAATTGTTTAGACAGGGAG 68
Query 101 ATAGAGAGGAAGAGAACCGCCTAAGGAAAATGGCGAACAGTCACACCGATGACTTGGACG 160
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 69 ATAGAGAGGAAGAGAAACGCCTAAGGAAAATGGCCAACAGTCACACCGATGACTTAGACG 128
Query 161 AGCTTCTCGATAGTGCATTGGATGATTTCAAAGATCTCAATCTTTCTCATCaaagaaatc 220
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 129 AGCTTCTCGATAGTGCATTGGATGATTTCAAAGATCTCAATC-TT-TC-TCAAAGAAATC 185
Query 221 aaagggaagctcaagaggaggaggaaaagaagaggaaagaagagaCGGTTTTATTACCGA 280
|||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 186 AAAGGGAAGCGCAAGAGGAGGA-G--AAGAAGAAGAAAGAAGAGACGGTTTTATTACCGA 242
Query 281 GTGGAGTTCAAGGTCTTGGAATGGGATTACCAGATATGAGAAGCAAGAAGAGAGGAAAAC 340
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 243 GTGGAGTTCAAGGTCTTGGAATGGGATTACCAGATATGAGAAGCAAGAAAAAAGGAAAGC 302
Query 341 AAAAGGTTTCCAAAGAGGATCATGTTGCTGAAGCTCTTGATAAGCTTAGGGAACAAACTA 400
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AAAAGGTTTCTAAAGAGGATCATGTTGCTGAAGCTCTTGATAAGCTTAGGGAACAAACTA 362
Query 401 GGGAAACTGTCAAAGGATTGGAATCCATTTCTTCTAAGCAGCTGCCTGCTTCTGATGATG 460
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 363 GGGAAACTGTCAAAGGATTGGAATCCATTTCTTCTAAGCAGCTGCCAGCTTCTGATGATG 422
Query 461 ATGGAATGGTTGAGGATTTTCTCAAACAATTCGAGGATCTTGCTGGATCTAAGGACTTGG 520
||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||
Sbjct 423 ATGGAATGGTTGAGGATTTTCTCAAGCAATTTGAGGATCTTACTGGATCCAAGGACTTGG 482
Query 521 AATCAATAGTCGAGACGATGATGCAACAGCTATTGTCGAAGGATATTCTCCACGAACCAA 580
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 483 AATCAATAGTCGAAACGATGATGCAACAGCTATTGTCGAAGGATATTCTTCACGAACCAA 542
Query 581 TGAAGGAGCTTGGCGCAAGATATCCGAAATGGCTAAAAGAGAATGAAGCCAGTCTAAGCA 640
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 543 TGAAGGAGCTTGGTGCAAGATATCCGAAATGGCTAAAAGAGAATGAAGCCAGTCTAACCA 602
Query 641 AAGAAGACTACAAACGATATTCACAACAGTACAAACTAATAGAAGAACTCAATGCAGTGT 700
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 603 AAGAAGACTACAAACGTTATTCACAACAGTACAAACTAATAGAAGAACTCAATGCGGTAT 662
Query 701 ACGAGAATGAACCTAACAATTCATCTAAGATAATGGAGATCATGCAAAAGATGCAGGAAT 760
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 663 ACGAGAATGAACCGAACAATTCTTCTAAGATAATGGAGATCATGCAGAAGATGCAAGAAT 722
Query 761 GTGGACAACCCCCGAGTGATATAGTTAAAGAGATTGATCCCGGGTTTGATTTCGCAAGTC 820
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 723 GCGGACAACCCCCGAGTGATATAGTTAAAGAGATCGATCCCGGGTTTGATTTTGCAAGTC 782
Query 821 TTGGCCAAATATCCCCAGAGATGCTGGAGTCCTCGCCAAATTGCTGTATCATGTGATGGG 880
| ||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 783 TAGGCCAAATATCTCCGGAGATGCTAGAGTCCTCGCCAAATTGCTGTATAATGTGATGGG 842
Query 881 GCCAAACAGCTTCAAGAATTATATGTCGTTTGTTTTTCTCTTGTGTTATAAAACTCAAAA 940
||||||||||||||| ||||| || | | || | || || ||||||||||||
Sbjct 843 GCCAAACAGCTTCAAAAATTA-AT-TA-T--GT----C----GT-TT-TAAAACTCAAAA 887
Query 941 GCTCTGTTTCAATTATGATTGGAATTTCACACACACAAAAA 981
||||||||||||||||||||||||||||||||| | |||||
Sbjct 888 GCTCTGTTTCAATTATGATTGGAATTTCACACA-A-AAAAA 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37665441996
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5