BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03500.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317188 jgi|Araly1|317188|fgenesh1_pm.C_scaffold_3000204 1386 0.0
Ahg939548 jgi|Araly1|939548|scaffold_600092.1 372 3e-102
Ahg326186 jgi|Araly1|326186|fgenesh1_pm.C_scaffold_6001406 350 1e-95
Ahg952171 jgi|Araly1|952171|scaffold_43500001.1 272 3e-72
Ahg927809 jgi|Araly1|927809|scaffold_300266.1 198 5e-50
> Ahg317188 jgi|Araly1|317188|fgenesh1_pm.C_scaffold_3000204
Length=819
Score = 1386 bits (750), Expect = 0.0
Identities = 796/819 (97%), Gaps = 0/819 (0%)
Strand=Plus/Plus
Query 1 ATGAAGTTGTTTGATGCTCATTGTCACCTCCAAGACAAGAGGGTCATCGACAAAGCCTCG 60
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTGTTTGATGCTCATTGCCACCTTCAAGACAAGAGGGTCATCGACAAAGCCTCT 60
Query 61 CAGCTCATATCTGCTGCTTTAGCTGTCGGTGTTACCAATTTCGCAGTCAATGGAACCTCC 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CAGCTCATATCTGCTGCTTTAGCTGTCGGTGTTACCAATTTCGCTGTCAATGGAACCTCC 120
Query 121 GAGAAAGATTGGAACTTGGTGAAAGAGATGGGAGAGACGTATCCTTCTGTTGTTCCTTGC 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGAAAGATTGGGACTTGGTGAAAGAGATGGGAGAGACGTATCCTTCTGTTGTTCCTTGC 180
Query 181 TTTGGACTCCATCCTTGGTTTATTGCTGATAGAAGCCCTCATTGGTTTAAAACATTGAAG 240
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TTTGGACTTCATCCTTGGTTTATTGCTGATAGAAGCCCTCATTGGTTTAAGACATTGAAG 240
Query 241 AAGTTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTAGACAAAGGTCCC 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 AAGTTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTGGACAAAGGTCCC 300
Query 301 TTAGCAGGAGGAATTGATTACTCAGACCAGCTAGTCGTGTTTCGCCCACAGCTTGAACTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTAGCAGGAGGAATTGATTACTCAGACCAGCTAGTCGTGTTTCGCCCACAGCTTGAACTT 360
Query 361 GCAAAAGAACTGAACAAACCAGTAGCAGTTCATTGCATCGATGCATTTGATGATCTCCTA 420
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 GCAAAAGAACTGAACAAACCAGTAGCAGTTCATTGCATCGATGCATTCGATGATCTCCTC 420
Query 421 GAGATAATGAGATCCATAGGGCCTTTTCCTGCTGGGGTGATTCTTCATTCATTCAATGGT 480
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GAGATAATGAGATCCGTAGGGCCTTTTCCTGCTGGTGTGATTCTTCATTCATTCAATGGT 480
Query 481 TCAGCTGAAGTTGTTCCTAAACTCGCTGAGCTTGGTGCATACTTCTCTTTTTCTGGCTGG 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 TCAGCTGAAGTTGTTCCTAAACTCGCTGAGCTTGGTGCATACTTGTCTTTTTCTGGCTGG 540
Query 541 TTCACTTACATTGATGAGAAAATTGCCAAGAAGACTTTGAAATCGATTCCTTCCGATAGG 600
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TTCACTTATATTGATGAGAAAATTGCGAAGAAGACTTTGAAATCGATTCCTTCCGATAGG 600
Query 601 CTCTTATTGGAGACGGATTCACCTGACGGGTTACCAAAATCAGATGAGAGTTCTTCGGAT 660
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 601 TTCTTATTGGAGACGGATTCACCTGATGGGTTACCAAAATCAGATGAGAGTTCTTCGAAT 660
Query 661 CCAAAACCAACTCTCAATGAGCCTGCAAACATTCTTGCTGTACTAGATTATGTTGCGAAC 720
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 661 CCAAAACCAGCTCTCAATGAGCCTGCAAACATTCTTACTGTACTAGATTATGTTGCAAAC 720
Query 721 CTGTCAAACATGAAGAAGGAAGAGCTTGCGGAGTTAAGTTATGTGAATTCTGTGAGGTTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGTCAAACATGAAGAAGGAAGAGCTTGCGGAGTTAAGTTATGTGAATTCTGTGAGGTTG 780
Query 781 TTTTCTTATCCAGGTTCCAAATTGCTTACAGACCAGTAA 819
||||||||||||||||| |||||||||||| ||||||||
Sbjct 781 TTTTCTTATCCAGGTTCTAAATTGCTTACATACCAGTAA 819
> Ahg939548 jgi|Araly1|939548|scaffold_600092.1
Length=419
Score = 372 bits (201), Expect = 3e-102
Identities = 223/234 (95%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 350 AGCTTGAACTTGCAAAAGAACTGAACAAACCAGTAGCAGTTCATTGCATCGATGCATTTG 409
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AGCTTGAACTTGCAAAAGAAATGAACAAACCAGTAGCAGTTCATTGCATCGATGCATTCG 60
Query 410 ATGATCTCCTAGAGATAATGAGATCCATAGGGCCTTTTCCTGCTGGGGTGATTCTTCATT 469
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 61 ATGATCTCCTAGAGATAATGAGATCCATAGGGCCTTTTCCTGGTGGTGTGATTCTTCATT 120
Query 470 CATTCAATGGTTCAGCTGAAGTTGTTCCTAAACTCGCTGAGCTTGGTGCATACTTCTCTT 529
||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||
Sbjct 121 CATTCAATGGTTCAGCTGAAGGTGTTCCTAAACTCAATGAGATTGGTGCATACTTGTCTT 180
Query 530 TTTCTGGCTGGTTCACTTACATTGATGAGAAAATTGCCAAGAAGACTTTGAAAT 583
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TCTCTGGCTGGTTCACTTACATTGATGAGAAAATTGCGAAGAAGACTTTGAAAT 234
> Ahg326186 jgi|Araly1|326186|fgenesh1_pm.C_scaffold_6001406
Length=978
Score = 350 bits (189), Expect = 1e-95
Identities = 453/575 (79%), Gaps = 40/575 (7%)
Strand=Plus/Plus
Query 100 TTCGCAGTCAATGGAACCTCCGAGAAAGATTGGAACTTGGTGAAAGAGATGGGAGAGACG 159
||||| ||||||||| |||||||||||||||||| ||||| ||||||||||||| |
Sbjct 100 TTCGCCGTCAATGGAGTCTCCGAGAAAGATTGGAATTTGGTCAAAGAGATGGGAGCTAAA 159
Query 160 TATCCTTCTGTTGTTCCTTGCTTT-GGACTCCATCCTTGGTTTATTGCT-GATAGAAGCC 217
|| ||||||||||||||||||||| ||| ||||||| |||| | | | | || || || |
Sbjct 160 TACCCTTCTGTTGTTCCTTGCTTTGGGA-TCCATCCATGGTATGTAG-TAGAGAGGAGTC 217
Query 218 CTCATTGGTTTAAAACATTGAAGAAG-TTCTTTGAGACCACTCCTACTGCTGCTGTTGGA 276
|||| |||||| | ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 218 CTCAATGGTTTGAGACATTGAAG-AGTTTCTTTGAGACCACTCCTACTGCTGCTGTTGGA 276
Query 277 GAAATTGGTTTAGACAAAGG-TCCCTTAGCAGGA-GG-A-ATTGATTACTCAGACCAGCT 332
||||||||||| |||||||| || | || ||| || | ||||||| |||||||||| |
Sbjct 277 GAAATTGGTTTGGACAAAGGGTC--TAAG--GGAAGGGAGATTGATTTCTCAGACCAGGT 332
Query 333 -AGTCGTGTTTCGCCCACAGCTTGAACTTGCAAAAGAACTGAACAAACCAG-TAGCAGTT 390
| | |||||||| | |||||| ||||||||||| ||| |||| | ||| | | |||||
Sbjct 333 TACT-GTGTTTCGTCAACAGCTCGAACTTGCAAAGGAATTGAATAGACCTGCTT-CAGTT 390
Query 391 CATTGCATC-GATGCATTTGATGATCTCCTAGAGATAATGAGATCCATAGGGCCTTTTCC 449
||||| || | |||||| | ||||| || |||||| | | ||| | ||||| |||||
Sbjct 391 CATTGTGTCCG-TGCATTCGGGGATCTACTCGAGATATTAAAATCTGTGGGGCCCTTTCC 449
Query 450 TGCTGGGGTGATTCTTCATTCAT-TCAATGGTTCAGCTGAAGTTG-TTCCTAAACTCGCT 507
| |||| || || ||||| || | || | ||||| ||||| | || ||||| || | |||
Sbjct 450 TTCTGGTGTCATGCTTCACTCGTATCTA-GGTTCTGCTGA-GATGGTTCCTGAATTTGCT 507
Query 508 GAGCTTGGTGCATACTTCTCTTTTTCTGGCTGGTTCACTTA---C-ATTGA-TGAGAAAA 562
|||| |||||||| ||||| || || || | ||| |||| | || || ||||||||
Sbjct 508 AAGCTCGGTGCATATTTCTCCTTCTCCGG-T--TTC-CTTATGTCCAT-GAGTGAGAAAA 562
Query 563 TTGCCAAGAAGACT-TTGAAATC-GATTCCTTCCGATAGGCTCTTATTGGAGACGGATTC 620
|||||||||| | |||||| | | |||| || |||||| |||||||||| || |||||
Sbjct 563 AAGCCAAGAAGA-TGTTGAAAGCAG-TTCCATCTGATAGGATCTTATTGGAAACTGATTC 620
Query 621 ACCTGACGGGTTACCAAAATCAGA-TGAGAGTTCT 654
||| || | ||||||| |||| | || |||||
Sbjct 621 ACCAGATGCACTACCAAAGGCAGAGTCAG-GTTCT 654
> Ahg952171 jgi|Araly1|952171|scaffold_43500001.1
Length=1105
Score = 272 bits (147), Expect = 3e-72
Identities = 183/199 (92%), Gaps = 7/199 (4%)
Strand=Plus/Plus
Query 1 ATGAAGTTGTTTGATGCTCATTGTCACCTCCAAGACAAGAGGGTCATCGACAAAGCCTCG 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 326 ATGAAGTTGTTTGATGCTCATTGTCACCTCCAAGACAAGAGGGTCTTCGACAAAGCCTCT 385
Query 61 CAGCTCATATCTG--CTGCTTTAGCTGTCGGTGTTACCAATTTCGCAGTCAATGGAACCT 118
||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 386 CAGCTCATATCTGCTCTG-TTTAGCTGTCGGTGTTACCAACTTCGCAGTCAATGGAACCT 444
Query 119 CCGAGAAAGATTGGAACTTGGTGAAAGAGATGGGAGAGACGTATCCTTCTGTTGTTCCTT 178
|| | ||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 445 CC--G--AGATTGGGACTTGGTGAAAGAGATGGGAGAGACGTATCCTTCTGTTGTACCTT 500
Query 179 GCTTTGGACTCCATCCTTG 197
|| | ||| | ||||||||
Sbjct 501 GCATCGGAGTACATCCTTG 519
> Ahg927809 jgi|Araly1|927809|scaffold_300266.1
Length=427
Score = 198 bits (107), Expect = 5e-50
Identities = 113/116 (97%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 703 CTAGATTATGTTGCGAACCTGTCAAACATGAAGAAGGAAGAGCTTGCGGAGTTAAGTTAT 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CTAGATTATGTTGCGAACCTGTCAAACATGAAGAAGGAAGAGCTTGCGGAGTTAAGTTAT 350
Query 763 GTGAATTCTGTGAGGTTGTTTTCTTATCCAGGTTCCAAATTGCTTACAGACCAGTA 818
||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct 351 GTGAATTCTGTGAGGTTGTTTTCTTATACAGGTTCTAAATTTCTTACAGACCAGTA 406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5