BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03510.1 Length=1669 Score E Sequences producing significant alignments: (Bits) Value Ahg317232 jgi|Araly1|317232|fgenesh1_pm.C_scaffold_3000248 2025 0.0 > Ahg317232 jgi|Araly1|317232|fgenesh1_pm.C_scaffold_3000248 Length=1377 Score = 2025 bits (1096), Expect = 0.0 Identities = 1295/1387 (93%), Gaps = 29/1387 (2%) Strand=Plus/Plus Query 302 ATGGACATCAACCCAAGTATCTTCCACCTCGTGACTAGATTCTGTTATGGATACAAAATC 361 |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1 ATGGACATCAACCCGAGTATCTTCCACCTCGTGACTAGATTCTGCTATGGCTACAAAATC 60 Query 362 GAATTATCAGCTGACAATATCGTCTCTGTGTTATGCATTGCTTATTACCTAGAGATGAGC 421 || |||||||||||||| |||||||||||| | |||||||||||||||||||| |||||| Sbjct 61 GATTTATCAGCTGACAACATCGTCTCTGTGCTCTGCATTGCTTATTACCTAGATATGAGC 120 Query 422 GATGATCATAGCTCTAACAACTTGTTGAACAAGGCAGTTACGTTCTTGGAACAACGAGTT 481 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 121 GATGATCATAGCTCTAACAACTTGTTGAACAAGGCAGTAACTTTCTTGGAACAACGAGTT 180 Query 482 CTTATGAGCTGGAGTGAGACCGTGAAAGCTCTTTGTATCTGCAGCGATAAGATTTTGGAC 541 || |||||||| | ||| ||||||||||||||| |||||||||||||||||||| ||||| Sbjct 181 CTCATGAGCTGTAATGAAACCGTGAAAGCTCTTCGTATCTGCAGCGATAAGATTCTGGAC 240 Query 542 AAACTAGCTAATGTTGGACTCATCGAAGTTTTCTTAGATTCTCTTATCGAAAAGGCTCTC 601 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 241 AAACTAGCTGATGTTGGACTCATCGAAGTTTTCTTAGATTCTCTTGTCGAAAAGGCTCTC 300 Query 602 AACGATACTAGGTTGCTCCAAGATTTGATTACATTACCACTTCGGTTATATGAACCATTG 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 301 AACGATACTAGGTTGCTCCAAGATTTGATTACATTACCACTTCGGTTATATGAACCCTTG 360 Query 662 ATTCTAGAAG-TGAGTAAGCACAATGTCTCGTTAGAAAACCTTGTGGCCTCTGTCTGCAA 720 ||||||| || |||||||||||||||||||| ||||||| |||| || || |||||||| Sbjct 361 ATTCTAG-AGTTGAGTAAGCACAATGTCTCGATAGAAAAATTTGTAGCATCGGTCTGCAA 419 Query 721 TTACGCGAATAGATGGGTTTTCGAGAAAGATTCGGGAGACGGAAGCGTTTCAAGAAACAA 780 |||||| || |||||||||||||||||||| | ||||||||||||||||| ||||| Sbjct 420 TTACGCAAAAAGATGGGTTTTCGAGAAAGA-T-----GACGGAAGCGTTTCAAGGAACAA 473 Query 781 GAGAGAAGGAATTGAAGCTGTTGAGAGGCTTTTGCCTCACCAAAGAGGAACAATCTCGTC 840 |||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||| Sbjct 474 GAGAGAAGTAATTGAAGCTGTTGAGAAGCTTTTGCCTCACGAAAGAGGAATAATCTCGTG 533 Query 841 TGGATTTCTGTTCAAATCGCTGAAAGAATCGATTTTTCTTGGTGCTTGCTCTGATTGCCG 900 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 534 TGGATTTCTGTTCAAATCTCTGAAAGAATCGATTTTTCTTGATGCTTGCTCTGATTGCCG 593 Query 901 AAAAGGGTTTGAAGTTAGGATAAGTAACCAGCTTGACATGGCTAGAGCAAAAGATCTCCA 960 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 594 AAAAGGGTTTGAAGTTAGGATCAGTAACCAGCTCGACATGGCTAGAGCAAAAGATCTCCT 653 Query 961 GATTCTGTCACCAACAGAAGATGGATCTTATGACATCGAGCTCTTGAAAACCATTCTCAA 1020 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 GATTCTATCACCAACAGAAGATGGATCTTATGACATCGAGCTCTTGAAAACCATTCTCAA 713 Query 1021 GAGCTTCTATAGTAACGATAGTGTCCCGGATCTTTCGCGGTTTGTGAGTGTAGCGAGAAT 1080 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 714 GAGCTTCTATAGTAACTATAGTGTCTCGGATCTTTCGCGGTTTGTGAGTGTAGCGAGAAT 773 Query 1081 GTTGGAAGAGTTTCTGTTGGAGGCTGCTGCGAGTGATGCTGGTTTAAGGGTAGGAACATT 1140 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 774 GTTGGAAGAGTTTCTGTTGGAGGCTGCTGCGAGTGATGCTGATTTAAGGGTAGGAACATT 833 Query 1141 CAAGGAACTAGCAGAAATTGCAGTTGCTGCGTCTTGTGATGTGCTGAGTTACTCTGATGG 1200 ||||||| |||||||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 834 CAAGGAATTAGCAGAAATAGCGGTTGCTGCGTCTTGTGATGTGCTGAGTTACTCCGATGG 893 Query 1201 AATATACAGAGCGATTGATG-TTTACTTGGAGAGGCATAGAGACTTGATTGAATCGGAGA 1259 |||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| Sbjct 894 AATATACAGAGCGATTGATGCTTT-CTTGGAGAGGCATAGAGATTTGATTGAATCGGAGA 952 Query 1260 AGATGGAAGCTTGTAGGTTTCTTCATTGTAAGAAACTTTCACCCGAGGCTTGTGAACATG 1319 |||||||||||||||| |||||| | |||||||||||||| ||||||||||||||||||| Sbjct 953 AGATGGAAGCTTGTAGATTTCTTGAATGTAAGAAACTTTCGCCCGAGGCTTGTGAACATG 1012 Query 1320 CTTCAAAGAACGAGAAGCTTCCATTGAGGATTGTTATGCAAGTTTTGTTTGTTTCTCAGA 1379 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 1013 CTTCAAAGAACGAGAAGCTTCCATTGCGGATTGTTATGCAAGTTTTATTTGTTTCTCAGA 1072 Query 1380 TGCAGATTCGGGATAAGGTGGCTAGAGAAATGAAAGGTGTAGTGGAG-AGAA--CA--G- 1433 |||||||||| |||||||||||||||||||||||||||||||| ||| |||| || | Sbjct 1073 TGCAGATTCGCGATAAGGTGGCTAGAGAAATGAAAGGTGTAGTAGAGGAGAAAACACAGG 1132 Query 1434 A--A---A-ATCAAG-TAGATGAAGTGGAGAGTATGAGTAAGAAGTTGTTAAAGCTCGAG 1486 | | | || ||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1133 ATCAGGTACATGAAGAT-GATGAAGTGGAGAGTATGAGTAAGAAGTTGTTAAAGCTCGAG 1191 Query 1487 ATAGAACCTGATTACATG-AAGAAAAGAAAGATTGAGAATCTTGAATGTGTTGTTCATTG 1545 |||||||||||||| | | |||||||||||||||||||||||||||||||||||| |||| Sbjct 1192 ATAGAACCTGATTATA-GCAAGAAAAGAAAGATTGAGAATCTTGAATGTGTTGTTTATTG 1250 Query 1546 CGAGAAGAAGAAGACAAGTGTGTGGAGAGAAGTAAAGAGGAAGTTTGGTTGTATGACTTC 1605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1251 CGAGAAGAAGAAGACAAGTGTGTGGAGAGAAGTAAAGAGGAAGTTTGGTTGTATGACTTC 1310 Query 1606 TTCTACCATGGATGCTTGCAGTTGTCATATCAAGAAGAGGAAGA---CTTATCATAGCTA 1662 |||||||||||||||||||| ||||||| ||||||||||||||| |||| ||| ||| Sbjct 1311 TTCTACCATGGATGCTTGCAATTGTCATTTCAAGAAGAGGAAGAAGACTTACCATCTCTA 1370 Query 1663 CAAATAA 1669 ||||||| Sbjct 1371 CAAATAA 1377 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62582272535 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5