BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03510.1
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317232 jgi|Araly1|317232|fgenesh1_pm.C_scaffold_3000248 2025 0.0
> Ahg317232 jgi|Araly1|317232|fgenesh1_pm.C_scaffold_3000248
Length=1377
Score = 2025 bits (1096), Expect = 0.0
Identities = 1295/1387 (93%), Gaps = 29/1387 (2%)
Strand=Plus/Plus
Query 302 ATGGACATCAACCCAAGTATCTTCCACCTCGTGACTAGATTCTGTTATGGATACAAAATC 361
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1 ATGGACATCAACCCGAGTATCTTCCACCTCGTGACTAGATTCTGCTATGGCTACAAAATC 60
Query 362 GAATTATCAGCTGACAATATCGTCTCTGTGTTATGCATTGCTTATTACCTAGAGATGAGC 421
|| |||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||
Sbjct 61 GATTTATCAGCTGACAACATCGTCTCTGTGCTCTGCATTGCTTATTACCTAGATATGAGC 120
Query 422 GATGATCATAGCTCTAACAACTTGTTGAACAAGGCAGTTACGTTCTTGGAACAACGAGTT 481
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 121 GATGATCATAGCTCTAACAACTTGTTGAACAAGGCAGTAACTTTCTTGGAACAACGAGTT 180
Query 482 CTTATGAGCTGGAGTGAGACCGTGAAAGCTCTTTGTATCTGCAGCGATAAGATTTTGGAC 541
|| |||||||| | ||| ||||||||||||||| |||||||||||||||||||| |||||
Sbjct 181 CTCATGAGCTGTAATGAAACCGTGAAAGCTCTTCGTATCTGCAGCGATAAGATTCTGGAC 240
Query 542 AAACTAGCTAATGTTGGACTCATCGAAGTTTTCTTAGATTCTCTTATCGAAAAGGCTCTC 601
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 AAACTAGCTGATGTTGGACTCATCGAAGTTTTCTTAGATTCTCTTGTCGAAAAGGCTCTC 300
Query 602 AACGATACTAGGTTGCTCCAAGATTTGATTACATTACCACTTCGGTTATATGAACCATTG 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AACGATACTAGGTTGCTCCAAGATTTGATTACATTACCACTTCGGTTATATGAACCCTTG 360
Query 662 ATTCTAGAAG-TGAGTAAGCACAATGTCTCGTTAGAAAACCTTGTGGCCTCTGTCTGCAA 720
||||||| || |||||||||||||||||||| ||||||| |||| || || ||||||||
Sbjct 361 ATTCTAG-AGTTGAGTAAGCACAATGTCTCGATAGAAAAATTTGTAGCATCGGTCTGCAA 419
Query 721 TTACGCGAATAGATGGGTTTTCGAGAAAGATTCGGGAGACGGAAGCGTTTCAAGAAACAA 780
|||||| || |||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 420 TTACGCAAAAAGATGGGTTTTCGAGAAAGA-T-----GACGGAAGCGTTTCAAGGAACAA 473
Query 781 GAGAGAAGGAATTGAAGCTGTTGAGAGGCTTTTGCCTCACCAAAGAGGAACAATCTCGTC 840
|||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct 474 GAGAGAAGTAATTGAAGCTGTTGAGAAGCTTTTGCCTCACGAAAGAGGAATAATCTCGTG 533
Query 841 TGGATTTCTGTTCAAATCGCTGAAAGAATCGATTTTTCTTGGTGCTTGCTCTGATTGCCG 900
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 534 TGGATTTCTGTTCAAATCTCTGAAAGAATCGATTTTTCTTGATGCTTGCTCTGATTGCCG 593
Query 901 AAAAGGGTTTGAAGTTAGGATAAGTAACCAGCTTGACATGGCTAGAGCAAAAGATCTCCA 960
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 594 AAAAGGGTTTGAAGTTAGGATCAGTAACCAGCTCGACATGGCTAGAGCAAAAGATCTCCT 653
Query 961 GATTCTGTCACCAACAGAAGATGGATCTTATGACATCGAGCTCTTGAAAACCATTCTCAA 1020
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GATTCTATCACCAACAGAAGATGGATCTTATGACATCGAGCTCTTGAAAACCATTCTCAA 713
Query 1021 GAGCTTCTATAGTAACGATAGTGTCCCGGATCTTTCGCGGTTTGTGAGTGTAGCGAGAAT 1080
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 714 GAGCTTCTATAGTAACTATAGTGTCTCGGATCTTTCGCGGTTTGTGAGTGTAGCGAGAAT 773
Query 1081 GTTGGAAGAGTTTCTGTTGGAGGCTGCTGCGAGTGATGCTGGTTTAAGGGTAGGAACATT 1140
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 774 GTTGGAAGAGTTTCTGTTGGAGGCTGCTGCGAGTGATGCTGATTTAAGGGTAGGAACATT 833
Query 1141 CAAGGAACTAGCAGAAATTGCAGTTGCTGCGTCTTGTGATGTGCTGAGTTACTCTGATGG 1200
||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 834 CAAGGAATTAGCAGAAATAGCGGTTGCTGCGTCTTGTGATGTGCTGAGTTACTCCGATGG 893
Query 1201 AATATACAGAGCGATTGATG-TTTACTTGGAGAGGCATAGAGACTTGATTGAATCGGAGA 1259
|||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||
Sbjct 894 AATATACAGAGCGATTGATGCTTT-CTTGGAGAGGCATAGAGATTTGATTGAATCGGAGA 952
Query 1260 AGATGGAAGCTTGTAGGTTTCTTCATTGTAAGAAACTTTCACCCGAGGCTTGTGAACATG 1319
|||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||
Sbjct 953 AGATGGAAGCTTGTAGATTTCTTGAATGTAAGAAACTTTCGCCCGAGGCTTGTGAACATG 1012
Query 1320 CTTCAAAGAACGAGAAGCTTCCATTGAGGATTGTTATGCAAGTTTTGTTTGTTTCTCAGA 1379
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1013 CTTCAAAGAACGAGAAGCTTCCATTGCGGATTGTTATGCAAGTTTTATTTGTTTCTCAGA 1072
Query 1380 TGCAGATTCGGGATAAGGTGGCTAGAGAAATGAAAGGTGTAGTGGAG-AGAA--CA--G- 1433
|||||||||| |||||||||||||||||||||||||||||||| ||| |||| || |
Sbjct 1073 TGCAGATTCGCGATAAGGTGGCTAGAGAAATGAAAGGTGTAGTAGAGGAGAAAACACAGG 1132
Query 1434 A--A---A-ATCAAG-TAGATGAAGTGGAGAGTATGAGTAAGAAGTTGTTAAAGCTCGAG 1486
| | | || ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 ATCAGGTACATGAAGAT-GATGAAGTGGAGAGTATGAGTAAGAAGTTGTTAAAGCTCGAG 1191
Query 1487 ATAGAACCTGATTACATG-AAGAAAAGAAAGATTGAGAATCTTGAATGTGTTGTTCATTG 1545
|||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1192 ATAGAACCTGATTATA-GCAAGAAAAGAAAGATTGAGAATCTTGAATGTGTTGTTTATTG 1250
Query 1546 CGAGAAGAAGAAGACAAGTGTGTGGAGAGAAGTAAAGAGGAAGTTTGGTTGTATGACTTC 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 CGAGAAGAAGAAGACAAGTGTGTGGAGAGAAGTAAAGAGGAAGTTTGGTTGTATGACTTC 1310
Query 1606 TTCTACCATGGATGCTTGCAGTTGTCATATCAAGAAGAGGAAGA---CTTATCATAGCTA 1662
|||||||||||||||||||| ||||||| ||||||||||||||| |||| ||| |||
Sbjct 1311 TTCTACCATGGATGCTTGCAATTGTCATTTCAAGAAGAGGAAGAAGACTTACCATCTCTA 1370
Query 1663 CAAATAA 1669
|||||||
Sbjct 1371 CAAATAA 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62582272535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5