BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03520.1
Length=1780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927869 jgi|Araly1|927869|scaffold_300326.1 2556 0.0
> Ahg927869 jgi|Araly1|927869|scaffold_300326.1
Length=1616
Score = 2556 bits (1384), Expect = 0.0
Identities = 1528/1599 (96%), Gaps = 4/1599 (0%)
Strand=Plus/Plus
Query 98 AAAAAGTAAA-AGAAGTATGGTGGAGGAAACGAGCTCTGGTGGTGGCTCATCGGCTTCTC 156
||||| |||| |||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 7 AAAAA-TAAAGAGAAGTATGGTGGAGGAAACGAGCTCTGGTGGTGGCTCTTCGTCTTCTC 65
Query 157 CGATCAAAACCATCGTCGTTTTGGTTCAGGAGAACAGGTCGTTCGATCACATGTTAGGTT 216
| ||||||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 66 CTATCAAAACCGTCGTCGTGTTGGTTCAGGAGAACAGGTCTTTCGACCACATGTTAGGTT 125
Query 217 GGTTCAAGGAGCTTAACCCAGAAATCGATGGAGTATCCGAATCCGAACCAAGATCCAACC 276
|||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 126 GGTTTAAGGAACTAAACCCGGAAATCGATGGAGTATCCGAATCCGAACCAAGATCCAACC 185
Query 277 CACTTTCTACATCTGACCCGAACTCTGCTCAAATCTTCTTCGGCAAAGAATCTCAGAACA 336
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 186 CAATTTCTACATCTGACCCGAACTCTGCTCAAGTCTTCTTCGGCAAAGAATCTCAGAACA 245
Query 337 TTGATCCTGATCCCGGTCACTCTTTTCAGGCGATCTACGAACAAGTGTTTGGAAAACCAT 396
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 246 TTGATCCTGATCCCGGTCACTCTTTTCAGGCGATCTACGAACAAGTGTTCGGAAAACCAT 305
Query 397 TCAGCGACGAGAGTCCGTACCCGGATCCGAAGATGAACGGGTTCGTACAAAACGCAGAGG 456
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 306 TCAGCGACGAGAGTCCGTACCCGTATCCGAAAATGAACGGGTTCGTACAAAACGCAGAGG 365
Query 457 CGATAACAAAAGGGATGTCGGAGAAAGTAGTGATGCAAGGTTTTCCGCCGGAGAAACTTC 516
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 366 CGATAACAAAAGGGATGTCGGAGAAAGTAGTGATGCAAGGGTTTCCGCCGGAGAAACTTC 425
Query 517 CGGTATTCAAGGAACTAGTTCAAGAATTCGCTGTCTGCGATCGGTGGTTCTCGTCGTTGC 576
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 426 CGGTATTCAAGGAACTAGTTCAAGAATTCGCCGTCTGCGATCGGTGGTTCTCGTCGTTGC 485
Query 577 CCTCGTCCACGCAGCCTAACCGACTCTACGTCCACGCGGCGACATCAAACGGTGCGTTTA 636
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 486 CGTCGTCGACGCAGCCTAACCGACTCTACGTCCACGCAGCGACATCAAACGGTGCGTTTA 545
Query 637 GTAATGACACTAACACGCTTGTTCGTGGCTTTCCTCAGAGGACAGTGTTCGAATCACTTG 696
|||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 546 GTAATGACACTAACACACTTGTCCGTGGGTTTCCTCAGAGGACAGTCTTCGAATCACTTG 605
Query 697 AAGAGAGCGGTTTCACATTTGGAATTTATTACCAATCCTTTCCTAATTGCCTCTTTTACA 756
||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 606 AAGAGAGTGGTTTCACGTTTGGGATTTATTACCAATCTTTTCCTAATTGCCTCTTTTACA 665
Query 757 GGAACATGAGGAAACTGAAGTACGTGGACAACTTCCATCAATACCACTTAAGCTTCAAGA 816
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 666 GGAACATGAGGAAATTGAAGTACGTGGACAACTTTCATCAATACCACTTAAGCTTCAAGA 725
Query 817 GGCATTGCAAAGAAGGGAAGCTTCCAAACTATGTGGTTATAGAACCAAGGTACTTCAAGA 876
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |
Sbjct 726 GGCATTGCAAAGAAGGGAAGCTTCCAAACTATGTTGTCATAGAACCAAGATACTTCAACA 785
Query 877 TTTTGTCGGCTCCAGCTAATGATGACCATCCCAAAAACGACGTCGTTGAAGGCCAAAATC 936
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 786 TTTTGTCGGCTCCAGCAAATGATGACCATCCCAAAAACGACGTTGTTGAAGGCCAAAACC 845
Query 937 TAGTCAAAGAAATCTACGAAGCCTTAAGAGCTAGTCCTCAGTGGAACGAGATTCTCTTCG 996
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TAGTCAAAGAGATCTACGAAGCCTTAAGAGCTAGTCCTCAGTGGAACGAGATTCTCTTCG 905
Query 997 TTGTTGTTTATGATGAACATGGTGGTTATTATGACCACGTCCCTACTCCAGTCATTGGTG 1056
|||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||
Sbjct 906 TTGTTGTTTATGATGAACATGGTGGTTACTATGACCATGTCCCTACTCCAGTCACTGGTG 965
Query 1057 TCCCAAATCCTGATGGTCTAGTTGGACCTGAGCCCTATAACTTTAAGTTTGACCGGCTTG 1116
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 966 TCCCAAATCCTGATGGTCTTGTTGGACCCGAGCCCTATAACTTTAAGTTTGACCGGCTTG 1025
Query 1117 GTGTTAGGGTTCCTGCTTTGCTAATCTCGCCTTGGATCGAACCTGGAACGGTGTTACACG 1176
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1026 GTGTTAGGGTTCCTGCATTGCTAATCTCGCCTTGGATCGAACCTAAAACGGTGTTACACG 1085
Query 1177 AGCCAAATGGACCAGAGCCAACGTCGCAGTTCGAACATTCATCAATTCCGGCAACACTGA 1236
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1086 AGCCAAACGGACCAGAGCCAACGTCGCAGTTCGAGCATTCATCAATTCCGGCAACACTGA 1145
Query 1237 AGAAAATATTCAACCTCAAGAGCTTTCTTACAAAGCGTGACGAATGGGCTGGAACACTCG 1296
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1146 AAAAAATATTCAACCTCAAGAGCTTTCTTACAAAGCGTGATGAATGGGCTGGAACATTCG 1205
Query 1297 ATGCTGTCATCAACCGGACCAGCCCAAGGACGGACTGCCCCGTCACATTACCGGAACTTC 1356
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 1206 ATGCTGTCATCAACCGGACCAGCCCAAGGACAGACTGCCCTGTTACATTACCGGAACTTC 1265
Query 1357 CTAGGGCAAGAGACATAGACATTGGAACACAAGAAGAAGACGAAGATCTCACTGATTTTC 1416
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1266 CAAGGGCAAGAGACATAGACATTGAAACACAAGAAGAAGACGAAGATCTCACTGATTTTC 1325
Query 1417 AAATCGAACTGATTCAAGCAGCGGCTGTACTAAAAGGAGATCATATCAAAGACATTTACC 1476
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1326 AAATCGAATTGATTCAAGCAGCGGCTGTACTAAAGGGAGATCATATCAAAGACATTTACC 1385
Query 1477 CGTTTAAGCTCGCAGATAAAATGAAGGTTTTGGATGCGGCTAGGTACGTAGAAGAAGCTT 1536
||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1386 CGTTTAAGCTCGCGGATAACATGAAGGTTTTGGATGCGGCTCGGTACGTAGAAGAAGCTT 1445
Query 1537 TCACTAGATTCCATGGTGAGTCCAAGAAGGCTAAAGAAGAAGGCCGTGATGAGCATGAGA 1596
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1446 TCACTAGATTCCATGGTGAGTCCAAGAAGGCTAAAGAAGGAGGCCGTGATGAGCATGAGA 1505
Query 1597 TCGTTGATCTTTCTAAAGGATCTACTCGTCACTCGACTCCTAAGTCTTTTGTTCAGAAGT 1656
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1506 TCGTTGATCTTTCTAAAGGATCTACTCGTCACTCGACTCCTAAATCTTTCGTTCAGAAGT 1565
Query 1657 TATTCTCGTGTTTGATTTGTGATAATTGA-TCTTGAGTT 1694
| ||||| ||||||||||||||||||||| | |||||||
Sbjct 1566 TTTTCTCTTGTTTGATTTGTGATAATTGAAT-TTGAGTT 1603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66810289730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5