BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03530.1
Length=1877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317234 jgi|Araly1|317234|fgenesh1_pm.C_scaffold_3000250 2543 0.0
Ahg477599 jgi|Araly1|477599|fgenesh2_kg.3__300__AT3G03540.1 1753 0.0
> Ahg317234 jgi|Araly1|317234|fgenesh1_pm.C_scaffold_3000250
Length=1617
Score = 2543 bits (1377), Expect = 0.0
Identities = 1541/1621 (95%), Gaps = 8/1621 (0%)
Strand=Plus/Plus
Query 74 ATGATCGAGACGACCAAAGGCGGTTCAGGATCGTATCCGATCAAAACCATCGTCGTTTTG 133
|||| ||||||||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGAGCGAGACGACGAAAGGC---TCAGGATCGTATCCGATCAAAACCGTCGTCGTTTTG 57
Query 134 GTTCAAGAAAATCGTTCTTTTGACCACACCCTAGGCTGGTTTAAAGAACTAAACCGGGAA 193
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 58 GTTCAAGAAAATCGTTCTTTCGACCATGCCCTAGGCTGGTTTAAAGAACTAAACCGGGAA 117
Query 194 ATCGACGGCGTCACGAAATCTGATCCCAAATCCAACACGGTTTCGTCATCCGACACAAAC 253
||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 118 ATCGATGGCGTCACGAAGTCCGATCCCAAATCCAACACGGTTTCGTCCTCCGACACAAAC 177
Query 254 TCTCTTCGTGTAGTCTTCGGGGATCAGTCTCAGTACGTTAACCCGGATCCAGGTCACTCC 313
||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 178 TCTCTTCGTGTCGTCTTCGGGGACCAGTCTCAGTACGTTGACCCGGATCCAGGTCACTCC 237
Query 314 ATTCAGGATATCTACGAACAAGTGTTTGGTAAGCCATGGGATTCAGGTAAACCGGATCCA 373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ATTCAGGATATCTACGAACAAGTGTTTGGTAAGCCATGGGATTCAGGTAAACCGGATCCT 297
Query 374 AACCCGGGTC-ATCCTAACATGTCCGGTTTTGCTCAAAACGCCGAGAGAAACAAGAAAGG 432
|||||||||| | | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AACCCGGGTCCAGC-TACCATGTCCGGTTTTGCTCAAAACGCCGAGAGAAACAAGAAAGG 356
Query 433 GATGTCCTCCGCGGTTATGAACGGATTTAAACCGAATGCTTTGCCGGTTTACAAGGAGTT 492
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 357 GATGTCCTCTGCGGTTATGAACGGATTTAAACCGAACGCTTTGCCGGTTTACAAAGAGTT 416
Query 493 GGTTCAAAATTTCGCCATATGTGATAGGTGGTTTGCGTCGGTTCCAGCGTCGACGCAGCC 552
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 GGTTCAAAATTTCGCCATATGTGACAGGTGGTTTGCGTCGGTTCCAGCGTCGACGCAGCC 476
Query 553 AAACCGATTGTACGTACACTCGGCAACATCACATGGAGCAACGAGCAACGACAAGAAATT 612
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAATCGATTGTACGTACACTCAGCAACATCACATGGAGCAACGAGCAACGACAAGAAATT 536
Query 613 GCTACTCGAAGGGTTTCCACAGAAGACGATATTCGAGTCTCTCGATGAAGCTGGTTTTAG 672
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 537 GCTAATCGAAGGGTTTCCACAGAAGACGATATTCGAGTCTCTCCATGAAGCTGGTTTTAG 596
Query 673 CTTTGGCATTTACTACCAATTCCCTCCTTCCACTCTCTTTTATAGGAATTTGAGAAAGCT 732
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 597 CTTTGGCATTTACTACCAATTCCCTCCTTCTACTCTCTTTTATAGGAATTTGAGAAAGCT 656
Query 733 GAAATATTTGACACATTTCCACCAATACGGAATACAATTCAAGAAAGATTGCAAAGAAGG 792
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 GAAATATTTGACACATTTCCACCAATACGGTATACAATTCAAGAAAGATTGCAAAGAAGG 716
Query 793 AAAGCTACCCAACTACGTCGTGGTCGAACAACGTTGGTTTGATCTATTGTCAACTCCAGC 852
|||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||
Sbjct 717 GAAGCTACCGAACTACGTCGTGATCGAACAACGTTGGTTTGATCTATTGTCAATTCCGGC 776
Query 853 CAATGACGATCACCCTTCTCACGATGTCTCCGAGGGTCAAAAGCTCGTGAAAGAGGTCTA 912
||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 777 CAATGACGATCACCCCTCTCACGACGTTTCCGAAGGTCAAAAGCTCGTGAAAGAGGTCTA 836
Query 913 CGAGGCATTGAGATCGAGTCCTCAATGGAATGAGATTTTATTTATCATAACGTACGACGA 972
|||||||||||||||||||||||||||||| ||||||||||| | |||||||| |||||
Sbjct 837 CGAGGCATTGAGATCGAGTCCTCAATGGAACGAGATTTTATTCGTTATAACGTATGACGA 896
Query 973 GCATGGTGGATTTTACGACCATGTACCTACTCCAGTCGACGGAGTTCCTAATCCGGATGG 1032
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 897 GCATGGTGGATTTTACGACCATGTACCTACTCCGGTCGACGGAGTTCCTAATCCAGATGG 956
Query 1033 TATCTTGGGACCTCCACCATATAATTTTGAGTTTAACCGGCTCGGTGTTAGGGTTCCGAC 1092
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 957 TATTTTGGGACCTCCACCGTATAATTTTGAGTTTAACCGGCTCGGAGTTAGGGTTCCGAC 1016
Query 1093 TTTCTTCATCTCTCCTTGGATTGAGCCTGGCACAGTTATTCATGGGCCAAATGGGCCGTA 1152
|||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 1017 TTTCTTCATCTCTCCTTGGATTGAGCCTGGGACAGTTCTTCATGGGCCAAATGGACCGTT 1076
Query 1153 CCCAAGGTCACAATATGAGCATTCGTCAATTCCCGCAACGGTCAAGACAATTTTCAAACT 1212
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1077 CGCAAGGTCACAATATGAGCATTCGTCAATTCCCGCAACGGTCAAGAAAATTTTCAAACT 1136
Query 1213 CAAAGATTTCTTGTCAAAGAGAGATTCATGGGCTGGCACTTTTGAATCTGTTATTACGAG 1272
||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1137 CAAAGATTTCTTGACAAAGAGAGATTCATGGGCTGGTACTTTTGAATCTGTTATTGCGAG 1196
Query 1273 AGACTCACCAAGACAAGATTGCCCTGAAACATTATCAACTCCGATTAAACTAAGAGGGAC 1332
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1197 AGACTCACCAAGACAAGATTGCCCTGAAACATTATCAACTCCGGTTAAACTAAGAGGGAC 1256
Query 1333 AATGGCAAAAGAAAATGCACAATTAAGCGAATTTCAAGAAGATCTCGTTATAATGGCTGC 1392
| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1257 ATTGGCAAAAGAAAATGCACAATTAAGCGACTTTCAAGAAGAGCTCGTAATAATGGCTGC 1316
Query 1393 GGGATTAAAAGGAGACTACAAAAACGAAGAATTAATCCACAAGCTATGTAAAGAAACTTG 1452
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGGATTAAAAGGAGACTACAAAAACGAAGAATTAATCCACAAGCTATGTAAAGAAACTTG 1376
Query 1453 CGTTGCAGATGCATCCAAATACGTTACAAATGCGTTTGAGAAGTTTCTGGAAGAGTCAAG 1512
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1377 CGTTGCAGATGCTTCCAAATATGTTACAAATGCGTTTGAGAAGTTTCTAGAAGAGTCAAG 1436
Query 1513 AAAGGCAAGAGATAGAGGATGTGATGAGAACGACATCGTTTATTGCGTTGATGATGATGA 1572
|||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| |
Sbjct 1437 AAAGGCAAAAGATAGAGGATGTGATGAGAACGACATCATTTATTGCGTCGATGATGATCA 1496
Query 1573 TGATCAT---GTTGTGATACCACCACAATCACATTCAGAAGCATCAAATGCTGCTGCTCA 1629
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1497 TCATCATCATGTTGTGATACCACCACAATCACATTCAGAAGCATCAAATGCTGCTCCTCA 1556
Query 1630 ACCAAAAACGCAAACGTCTTTTTTCAATAAGTTATTCTCTTGCTTTATTCGCCATGATTG 1689
||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1557 ACCGAAAACGCAAACGTCTTTTTTCAATAAGTTATTCTCTTGCTTTGTTTGCCATGATTG 1616
Query 1690 A 1690
|
Sbjct 1617 A 1617
> Ahg477599 jgi|Araly1|477599|fgenesh2_kg.3__300__AT3G03540.1
Length=1572
Score = 1753 bits (949), Expect = 0.0
Identities = 1357/1553 (87%), Gaps = 31/1553 (2%)
Strand=Plus/Plus
Query 103 ATCGTATCCGATCAAAACCATCGTCGTTTTGGTTCAAGAAAATCGTTCTTTTGACCACAC 162
|||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 30 ATCGTATCCGATCAAAACCATCGTCGTTTTAGTCCAAGAGAATCGTTCTTTCGACCACAC 89
Query 163 CCTAGGCTGGTTTAAAGAACTAAACCGGGAAATCGACGGCGTC-ACGAAATCTGATCC-C 220
|| |||||||| ||||| |||||||||||||| || || ||| | ||||| || ||
Sbjct 90 ACTTGGCTGGTTCAAAGAGCTAAACCGGGAAATTGATGGAGTCGTC-AAATCGGA-CCTG 147
Query 221 AAATCCAACACGGTTTCGTCATCCGA-CACAAACTCTCTTC-GTGTAGTCTTCGGGGATC 278
|||| |||| |||||| ||| ||||| || ||| |||| | | | |||||||| || |
Sbjct 148 AAATTCAACCCGGTTTTGTCTTCCGACCA-AAATTCTC-ACAATATCGTCTTCGGTGACC 205
Query 279 AGTCTCAGTACGTTAACCCGGATCCAGGTCACTCCATTCAGGATATCTACGAACAAGTGT 338
|||||||||||||| ||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct 206 AGTCTCAGTACGTTGACCCGAATCCAGGTCACTCCATTCGGGATATTTACGAACAAGTGT 265
Query 339 TTGGTAAGCCATGGGATTCAGG-TAAACCGGATCCAAACCCGGGT-CATCCTAACATGTC 396
||||||||||||||||||| || | | |||||||||||||||||| || |||| |||||
Sbjct 266 TTGGTAAGCCATGGGATTC-GGTTCACCCGGATCCAAACCCGGGTCCA-GCTAAAATGTC 323
Query 397 CGGTTTTGCTCAAAACGCCGAGA-GAAACAAGAAAGGGATGTCCTCCGCGGTTATGAACG 455
||| ||||| ||||||||||| | | || | |||||||||||| || |||||||||||||
Sbjct 324 CGGATTTGCCCAAAACGCCGA-ACGGAAGATGAAAGGGATGTCATCTGCGGTTATGAACG 382
Query 456 GATTTAAACCGAATGCTTTGCCGGTTTACAAGGAGTTGGTTCAAAATTTCGCCATATGTG 515
||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 383 GATTTAAACCGGATGCTTTGCCGGTTTACAAGGAATTGGTTCAAAAATTCGCCATATGTG 442
Query 516 ATAGGTGGTTTGCGTCGGTTCCAGCGT-CGACGCAGCCAAACCGATTGTACGTACACTCG 574
|||||||||||||||| ||||| | || | || |||||||||||||||| || |||||
Sbjct 443 ATAGGTGGTTTGCGTCAGTTCCTG-GTGCAACACAGCCAAACCGATTGTTTGTCCACTCA 501
Query 575 GCAACATCACATGGAGCAACGAGCAACGACAAGAAATTGCTACTCGAAGGGTTTCCACAG 634
||||||||||||||| |||||| |||||| | |||||| ||| ||||||| ||||||||
Sbjct 502 GCAACATCACATGGAACAACGAACAACGAGAGGAAATTACTAATCGAAGGTTTTCCACAA 561
Query 635 AAGACGATATTCGAGTCTCTCGATGAAGCTGGTTTTAGCTTTGGCATTTACTACCAAT-T 693
||||||||||||||||| ||||||||||| ||||||| |||||| ||||| ||||||| |
Sbjct 562 AAGACGATATTCGAGTCACTCGATGAAGCCGGTTTTACCTTTGGGATTTATTACCAATGT 621
Query 694 CCCTCCTTCCACTCTCTTTTATAGGAATTTGAGAAAGCTGAAATATTTGACACATTTCCA 753
|||| | |||||||||||||||||||||||||| || || |||||||||| ||||||
Sbjct 622 -TTTCCTACTACTCTCTTTTATAGGAATTTGAGAAAACTCAAGTATTTGACACGTTTCCA 680
Query 754 CCAATACGGAATACAATTCAAGAAAGATTGCAAAGAAGGAAAGCTACCCAACTACGTCGT 813
| | |||||| ||||||||||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 681 CGACTACGGACTACAATTCAAGAAAGATTGTAAAGAAGGGAAGCTACCGAACTACGTTGT 740
Query 814 GGTCGAACAACGTTGGTTTGATCTATTGTC-AACTCCAGCCAATGACGATCACCCTTCTC 872
||| |||||||| |||| |||||||||||| || ||| || || |||||||| || || |
Sbjct 741 GGTTGAACAACGCTGGTATGATCTATTGTCGAA-TCCCGCTAACGACGATCATCCATCAC 799
Query 873 ACGATGTCTCCGAGGGTCAAAAGCTCGTGAAAGAGGTCTACGAGGCATTGAGATCGAGTC 932
| || |||||||| || |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 800 ATGACGTCTCCGAAGGCCAAAAGCTCGTGAAAGAGGTTTACGAGGCCTTGAGATCGAGTC 859
Query 933 CTCAATGGAATGAGATTTTATTTATCATAACGTACGACGAGCATGGTGGATTTTACGACC 992
|||||||||||||||||||||| || |||||||| ||||| || ||||| ||||||||||
Sbjct 860 CTCAATGGAATGAGATTTTATTCATTATAACGTATGACGAACACGGTGGGTTTTACGACC 919
Query 993 ATGTACCTACTCCAGTCGACGGAGTTCCTAATCCGGATGGTATCTTGGGACCTCCACCAT 1052
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 920 ATGTACCTACTCCGGTCGATGGAGTTCCTAATCCGGATGGTATCTTGGGACCTCCACCGT 979
Query 1053 ATAATTTTGAGTTTAACCGGCTCGGTGTTAGGGTTCCGACTTTCTTCATCTCTCCTTGGA 1112
|||||||||||||||||||||| || |||||||||||| | ||||||||||| |||||||
Sbjct 980 ATAATTTTGAGTTTAACCGGCTTGGCGTTAGGGTTCCGGCCTTCTTCATCTCCCCTTGGA 1039
Query 1113 TTGAGCCTGGCACAGTTATTCATGGGCCAAATGGGCCGTACCCAAGGTCACAATATGAGC 1172
|||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 1040 TTGAGCCTGGAACAATTATTCATGGGCCAAGTGGGCCGTACCCAATGTCACAATACGAGC 1099
Query 1173 ATTCGTCAATTCCCGCAACGGTCAAGACAATTTTCAAACTCA-AAGATTTCTTGTCAAAG 1231
|||| |||||||| ||||||||||||| |||||||||||||| || | |||||| |||||
Sbjct 1100 ATTCATCAATTCCTGCAACGGTCAAGAAAATTTTCAAACTCAGAA-ACTTCTTGACAAAG 1158
Query 1232 AGAGATTCATGGGCTGGCACTTTTGAATCTGTTATTACGAGAGACTCACCAAGACAAGAT 1291
||||||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||
Sbjct 1159 AGAGATTCATGGGCTGGCACTTTTGAATCCGTTATTACAAGATATTCACCAAGACAAGAT 1218
Query 1292 TGCCCTGAAACATTATCAACTCCGATTAAACTAAGAGGGACAATGGCAAAAGAAAATGCA 1351
||||||||||| ||||||| |||| | ||| | ||| ||| |||||||||||||||||
Sbjct 1219 TGCCCTGAAACTTTATCAAATCCGGTCAAAATGAGAACGACGGTGGCAAAAGAAAATGCA 1278
Query 1352 CAATTAAGCGAATTTCAAGAAGATCTCGTTATAATGGCTGCGGGATTAAAAGGAGACTAC 1411
|||| ||||| ||||||||||| ||||| ||| | ||||| ||||||||||||||||||
Sbjct 1279 GAATTGAGCGACTTTCAAGAAGAGCTCGTAATAGTTGCTGCAGGATTAAAAGGAGACTAC 1338
Query 1412 AAAAACGAAGAATTAATCCACAAGCTATGTAAAGAAACTTGCGTTGCAGATGCAT-CCAA 1470
|||||||||||||| || ||||||||||| |||||||||||||||||||| || | |||
Sbjct 1339 AAAAACGAAGAATTGATGCACAAGCTATGCAAAGAAACTTGCGTTGCAGACGC-TGCCAT 1397
Query 1471 ATACGTTACAAATGCGTTTGAGAAGTTTCTGGAAGAGTCAAGAAAGGCAAGAGATAGAGG 1530
||||||||| || |||||||| |||||| | |||||||| ||||||||||||| || ||
Sbjct 1398 ATACGTTACGAACGCGTTTGATAAGTTTATAGAAGAGTCTCGAAAGGCAAGAGAAAGGGG 1457
Query 1531 ATGTGATGAGAACGACATCGTTTATTGCGTTGATGATGATGATGATCATG-T-T-GTGAT 1587
|||||||||||||||||||||||||||| | ||||||||||||||||||| | | ||||
Sbjct 1458 ATGTGATGAGAACGACATCGTTTATTGCATCGATGATGATGATGATCATGATGTTGTGAA 1517
Query 1588 ACCACCACAATCACATTCAGAAG-CATCAAATGCTGCTGC-TCAACCAAAAAC 1638
|||||||| |||||| | |||| ||| | ||| | || | | ||||||||||
Sbjct 1518 ACCACCACCATCACAAAC-GAAGGCATTACATGTTACT-CATAAACCAAAAAC 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70505043495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5