BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03540.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477599 jgi|Araly1|477599|fgenesh2_kg.3__300__AT3G03540.1 2257 0.0
Ahg317234 jgi|Araly1|317234|fgenesh1_pm.C_scaffold_3000250 1786 0.0
> Ahg477599 jgi|Araly1|477599|fgenesh2_kg.3__300__AT3G03540.1
Length=1572
Score = 2257 bits (1222), Expect = 0.0
Identities = 1443/1551 (93%), Gaps = 9/1551 (1%)
Strand=Plus/Plus
Query 8 AGACGAAAAAAGGCTCAG-A--ATCGTATCCGATCAAAACCATCGTCGTTTTGGTTCAAG 64
||||| |||||||||||| | |||||||||||||||||||||||||||||| || ||||
Sbjct 8 AGACGCAAAAAGGCTCAGTATCATCGTATCCGATCAAAACCATCGTCGTTTTAGTCCAAG 67
Query 65 AGAATCGTTCTTTCGACCACACACTTGGCTGGTTCAAAGAGCTAAACCGGGAAATTGACG 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 68 AGAATCGTTCTTTCGACCACACACTTGGCTGGTTCAAAGAGCTAAACCGGGAAATTGATG 127
Query 125 GAGTCATGAAATCGGACCAGAAATTCAACCCGGGTTTT-TCCTCTGACCTAAATTCCCAC 183
||||| | |||||||||| |||||||||||| |||||| || || |||| |||||| |||
Sbjct 128 GAGTCGTCAAATCGGACCTGAAATTCAACCC-GGTTTTGTCTTCCGACCAAAATTCTCAC 186
Query 184 AACGTCGTCTTTGGCGACCAGTCTCAGTACGTTGACCCGAATCCAGGTCACTCCATTCGG 243
|| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AATATCGTCTTCGGTGACCAGTCTCAGTACGTTGACCCGAATCCAGGTCACTCCATTCGG 246
Query 244 GATATTTACGAACAAGTGTTCGGTAAACCATGGGATTCGGGTCACCCGGACCCAAACCCG 303
|||||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||
Sbjct 247 GATATTTACGAACAAGTGTTTGGTAAGCCATGGGATTCGGTTCACCCGGATCCAAACCCG 306
Query 304 GGTCCAGCTACAATGTCCGGATTTGCCCAAAACGCCGAGCGAAAGATGAAAGGGATGTCT 363
|||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 307 GGTCCAGCTAAAATGTCCGGATTTGCCCAAAACGCCGAACGGAAGATGAAAGGGATGTCA 366
Query 364 TCTGCGGTTATGAACGGATTTAAACCGGACGCTTTGCCGGTTTACAAGGAATTGGTTCAA 423
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 367 TCTGCGGTTATGAACGGATTTAAACCGGATGCTTTGCCGGTTTACAAGGAATTGGTTCAA 426
Query 424 AATTTCGCTATATGTGATAGGTGGTTTGCGTCGGTTCCGGGTGCAACACAGCCAAACCGA 483
|| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 427 AAATTCGCCATATGTGATAGGTGGTTTGCGTCAGTTCCTGGTGCAACACAGCCAAACCGA 486
Query 484 TTGTTTATACATTCGGCAACATCACACGGAACAACGAACAACGAGAGGAAATTACTGATC 543
|||||| | || || ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 487 TTGTTTGTCCACTCAGCAACATCACATGGAACAACGAACAACGAGAGGAAATTACTAATC 546
Query 544 GAAGGTTTTCCACAAAAGACGATATTCGAGTCACTCGATGAAGCTGGTTTTACCTTTGGG 603
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 547 GAAGGTTTTCCACAAAAGACGATATTCGAGTCACTCGATGAAGCCGGTTTTACCTTTGGG 606
Query 604 ATTTATTACCAATGTTTTCCTACTACTCTCTTTTATAGGAATTTGAGAAAACTCAAGTAT 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 ATTTATTACCAATGTTTTCCTACTACTCTCTTTTATAGGAATTTGAGAAAACTCAAGTAT 666
Query 664 TTGACACGTTTCCACGACTACGGACTACAATTCAAGAAAGATTGTAAAGAAGGGAATCTA 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 667 TTGACACGTTTCCACGACTACGGACTACAATTCAAGAAAGATTGTAAAGAAGGGAAGCTA 726
Query 724 CCGAACTATGTTGTGGTTGAACAACGTTGGTATGATCTATTGTTGAATCCCGCTAACGAT 783
|||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 727 CCGAACTACGTTGTGGTTGAACAACGCTGGTATGATCTATTGTCGAATCCCGCTAACGAC 786
Query 784 GATCATCCATCACATGACGTCTCCGAAGGCCAAAAGCTCGTGAAAGAAGTTTACGAGGCC 843
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 787 GATCATCCATCACATGACGTCTCCGAAGGCCAAAAGCTCGTGAAAGAGGTTTACGAGGCC 846
Query 844 TTGAGATCGAGTCCTCAATGGAATGAGATTTTATTCATTATAACATATGACGAACACGGT 903
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 847 TTGAGATCGAGTCCTCAATGGAATGAGATTTTATTCATTATAACGTATGACGAACACGGT 906
Query 904 GGATTCTACGACCATGTCCCTACTCCCCTCGACGGAGTTCCTAATCCGGATGGTATCTTG 963
|| || ||||||||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct 907 GGGTTTTACGACCATGTACCTACTCCGGTCGATGGAGTTCCTAATCCGGATGGTATCTTG 966
Query 964 GGACCTCCACCGTACAATTTTGAATTTAACCGGCTCGGCGTTAGGGTTCCGACTTTCTTC 1023
|||||||||||||| |||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct 967 GGACCTCCACCGTATAATTTTGAGTTTAACCGGCTTGGCGTTAGGGTTCCGGCCTTCTTC 1026
Query 1024 ATCTCCCCTTGGATTGAGCCTGGCACAGTTCTTCATGGGTCAAATGGGCCGTACCTAATG 1083
||||||||||||||||||||||| ||| || |||||||| ||| ||||||||||| ||||
Sbjct 1027 ATCTCCCCTTGGATTGAGCCTGGAACAATTATTCATGGGCCAAGTGGGCCGTACCCAATG 1086
Query 1084 TCACAATATGAGCATTCGTCAATTCCCGCAACGGTCAAGAAAATTTTCAAACTCA-AAGA 1142
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||| || |
Sbjct 1087 TCACAATACGAGCATTCATCAATTCCTGCAACGGTCAAGAAAATTTTCAAACTCAGAA-A 1145
Query 1143 TTTTTTGACAAAGAGAGATTCGTGGGCTGGCACTTTTGAATCTGTTATTACGAGAAACTC 1202
|| ||||||||||||||||| |||||||||||||||||||| |||||||| ||| | ||
Sbjct 1146 CTTCTTGACAAAGAGAGATTCATGGGCTGGCACTTTTGAATCCGTTATTACAAGATATTC 1205
Query 1203 ACCAAGACAAGATTGCCCTGAAACATTGTCAAATCCGGTCAAAATGAGAGGGACGGTGGC 1262
|||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 1206 ACCAAGACAAGATTGCCCTGAAACTTTATCAAATCCGGTCAAAATGAGAACGACGGTGGC 1265
Query 1263 AAAAGAAAATGCAGAATTGAGCGACTTTCAAGAAGAGCTTGTAATAGTTGCTGCGGGTTT 1322
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1266 AAAAGAAAATGCAGAATTGAGCGACTTTCAAGAAGAGCTCGTAATAGTTGCTGCAGGATT 1325
Query 1323 AAAAGGAGACTACAAAAACGAAGAATTGCTATACAAACTATGCaaaaaaaCTTGCGTTTC 1382
|||||||||||||||||||||||||||| | |||| ||||||||| ||||||||||| |
Sbjct 1326 AAAAGGAGACTACAAAAACGAAGAATTGATGCACAAGCTATGCAAAGAAACTTGCGTTGC 1385
Query 1383 AGATGCTTCTAAATACGTTACGAAAGCGTTTGATAAGTTTGTAGAAGAGTCTAAAAAGGC 1442
||| ||| | | |||||||||||| ||||||||||||||| ||||||||||| ||||||
Sbjct 1386 AGACGCTGCCATATACGTTACGAACGCGTTTGATAAGTTTATAGAAGAGTCTCGAAAGGC 1445
Query 1443 AAGAGAAAGGGGAGGTGATGAGAACGACATCGTTTTTTGCGTTGATGATGATGATGATCA 1502
||||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||||
Sbjct 1446 AAGAGAAAGGGGATGTGATGAGAACGACATCGTTTATTGCATCGATGATGATGATGATCA 1505
Query 1503 TAATGTTGTGAAACCACCACCATCACAATCAGA-GCCATCACATGCTACTC 1552
| |||||||||||||||||||||||||| | || | ||| ||||| |||||
Sbjct 1506 TGATGTTGTGAAACCACCACCATCACAAAC-GAAGGCATTACATGTTACTC 1555
> Ahg317234 jgi|Araly1|317234|fgenesh1_pm.C_scaffold_3000250
Length=1617
Score = 1786 bits (967), Expect = 0.0
Identities = 1367/1561 (88%), Gaps = 24/1561 (2%)
Strand=Plus/Plus
Query 6 CGAGACGAAAAAAGGCTCAGAATCGTATCCGATCAAAACCATCGTCGTTTTGGTTCAAGA 65
|||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 6 CGAGACGACGAAAGGCTCAGGATCGTATCCGATCAAAACCGTCGTCGTTTTGGTTCAAGA 65
Query 66 GAATCGTTCTTTCGACCACACACTTGGCTGGTTCAAAGAGCTAAACCGGGAAATTGACGG 125
||||||||||||||||| | || |||||||| ||||| |||||||||||||| || ||
Sbjct 66 AAATCGTTCTTTCGACCATGCCCTAGGCTGGTTTAAAGAACTAAACCGGGAAATCGATGG 125
Query 126 AGTCATGAAATCGGA-CCAGAAATTCAACCCGGGTTT-TTCCTCTGAC-CTAAATTC-CC 181
|||| ||| || || || |||| |||| | ||||| ||||| ||| | ||| || |
Sbjct 126 CGTCACGAAGTCCGATCC-CAAATCCAACAC-GGTTTCGTCCTCCGACAC-AAACTCTCT 182
Query 182 ACAACGTCGTCTTTGGCGACCAGTCTCAGTACGTTGACCCGAATCCAGGTCACTCCATTC 241
| |||||||| || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 183 TC-GTGTCGTCTTCGGGGACCAGTCTCAGTACGTTGACCCGGATCCAGGTCACTCCATTC 241
Query 242 GGGATATTTACGAACAAGTGTTCGGTAAACCATGGGATTCGGGTCACCCGGACCCAAACC 301
|||||| |||||||||||||| ||||| ||||||||||| ||| | ||||| || ||||
Sbjct 242 AGGATATCTACGAACAAGTGTTTGGTAAGCCATGGGATTCAGGTAAACCGGATCCTAACC 301
Query 302 CGGGTCCAGCTACAATGTCCGGATTTGCCCAAAACGCCGAGCGAAAGATGAAAGGGATGT 361
||||||||||||| |||||||| ||||| |||||||||||| |||| | |||||||||||
Sbjct 302 CGGGTCCAGCTACCATGTCCGGTTTTGCTCAAAACGCCGAGAGAAACAAGAAAGGGATGT 361
Query 362 CTTCTGCGGTTATGAACGGATTTAAACCGGACGCTTTGCCGGTTTACAAGGAATTGGTTC 421
| ||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||
Sbjct 362 CCTCTGCGGTTATGAACGGATTTAAACCGAACGCTTTGCCGGTTTACAAAGAGTTGGTTC 421
Query 422 AAAATTTCGCTATATGTGATAGGTGGTTTGCGTCGGTTCC-GGGTGCAACACAGCCAAAC 480
|||||||||| |||||||| |||||||||||||||||||| | || | || ||||||||
Sbjct 422 AAAATTTCGCCATATGTGACAGGTGGTTTGCGTCGGTTCCAGCGT-CGACGCAGCCAAAT 480
Query 481 CGATTGTTTATACATTCGGCAACATCACACGGAACAACGAACAACGAGAGGAAATTACTG 540
||||||| |||| || ||||||||||| ||| |||||| |||||| | |||||| ||
Sbjct 481 CGATTGTACGTACACTCAGCAACATCACATGGAGCAACGAGCAACGACAAGAAATTGCTA 540
Query 541 ATCGAAGGTTTTCCACAAAAGACGATATTCGAGTCACTCGATGAAGCTGGTTTTACCTTT 600
|||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||| ||||
Sbjct 541 ATCGAAGGGTTTCCACAGAAGACGATATTCGAGTCTCTCCATGAAGCTGGTTTTAGCTTT 600
Query 601 GGGATTTATTACCAATGT-TTTCCTACTACTCTCTTTTATAGGAATTTGAGAAAACTCAA 659
|| ||||| ||||||| | |||| |||||||||||||||||||||||||||| || ||
Sbjct 601 GGCATTTACTACCAAT-TCCCTCCTTCTACTCTCTTTTATAGGAATTTGAGAAAGCTGAA 659
Query 660 GTATTTGACACGTTTCCACGACTACGG-ACTACAATTCAAGAAAGATTGTAAAGAAGGGA 718
|||||||||| ||||||| | ||||| | ||||||||||||||||||| ||||||||||
Sbjct 660 ATATTTGACACATTTCCACCAATACGGTA-TACAATTCAAGAAAGATTGCAAAGAAGGGA 718
Query 719 ATCTACCGAACTATGTTGTGGTTGAACAACGTTGGTATGATCTATTGTTGAA-TCCCGCT 777
| ||||||||||| || ||| | ||||||||||||| |||||||||| | || ||| ||
Sbjct 719 AGCTACCGAACTACGTCGTGATCGAACAACGTTGGTTTGATCTATTG-TCAATTCCGGCC 777
Query 778 AACGATGATCATCCATCACATGACGTCTCCGAAGGCCAAAAGCTCGTGAAAGAAGTTTAC 837
|| || ||||| || || || ||||| |||||||| ||||||||||||||||| || |||
Sbjct 778 AATGACGATCACCCCTCTCACGACGTTTCCGAAGGTCAAAAGCTCGTGAAAGAGGTCTAC 837
Query 838 GAGGCCTTGAGATCGAGTCCTCAATGGAATGAGATTTTATTCATTATAACATATGACGAA 897
||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 838 GAGGCATTGAGATCGAGTCCTCAATGGAACGAGATTTTATTCGTTATAACGTATGACGAG 897
Query 898 CACGGTGGATTCTACGACCATGTCCCTACTCCCCTCGACGGAGTTCCTAATCCGGATGGT 957
|| |||||||| ||||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 898 CATGGTGGATTTTACGACCATGTACCTACTCCGGTCGACGGAGTTCCTAATCCAGATGGT 957
Query 958 ATCTTGGGACCTCCACCGTACAATTTTGAATTTAACCGGCTCGGCGTTAGGGTTCCGACT 1017
|| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 958 ATTTTGGGACCTCCACCGTATAATTTTGAGTTTAACCGGCTCGGAGTTAGGGTTCCGACT 1017
Query 1018 TTCTTCATCTCCCCTTGGATTGAGCCTGGCACAGTTCTTCATGGGTCAAATGGGCCGTAC 1077
||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||| |
Sbjct 1018 TTCTTCATCTCTCCTTGGATTGAGCCTGGGACAGTTCTTCATGGGCCAAATGGACCGTTC 1077
Query 1078 -CTAATGTCACAATATGAGCATTCGTCAATTCCCGCAACGGTCAAGAAAATTTTCAAACT 1136
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GC-AAGGTCACAATATGAGCATTCGTCAATTCCCGCAACGGTCAAGAAAATTTTCAAACT 1136
Query 1137 CAAAGATTTTTTGACAAAGAGAGATTCGTGGGCTGGCACTTTTGAATCTGTTATTACGAG 1196
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 1137 CAAAGATTTCTTGACAAAGAGAGATTCATGGGCTGGTACTTTTGAATCTGTTATTGCGAG 1196
Query 1197 AAACTCACCAAGACAAGATTGCCCTGAAACATTGTCAAATCCGGTCAAAATGAGAGGGAC 1256
| ||||||||||||||||||||||||||||||| |||| |||||| ||| | ||||||||
Sbjct 1197 AGACTCACCAAGACAAGATTGCCCTGAAACATTATCAACTCCGGTTAAACTAAGAGGGAC 1256
Query 1257 GGTGGCAAAAGAAAATGCAGAATTGAGCGACTTTCAAGAAGAGCTTGTAATAGTTGCTGC 1316
||||||||||||||||| |||| |||||||||||||||||||| |||||| | |||||
Sbjct 1257 ATTGGCAAAAGAAAATGCACAATTAAGCGACTTTCAAGAAGAGCTCGTAATAATGGCTGC 1316
Query 1317 GGGTTTAAAAGGAGACTACAAAAACGAAGAATTGCTATACAAACTATGCaaaaaaaCTTG 1376
|| ||||||||||||||||||||||||||||| | |||| ||||| ||| |||||||
Sbjct 1317 AGGATTAAAAGGAGACTACAAAAACGAAGAATTAATCCACAAGCTATGTAAAGAAACTTG 1376
Query 1377 CGTTTCAGATGCTTCTAAATACGTTACGAAA-GCGTTTGATAAGTTTGTAGAAGAGTCTA 1435
|||| |||||||||| ||||| ||||| ||| |||||||| |||||| |||||||||| |
Sbjct 1377 CGTTGCAGATGCTTCCAAATATGTTAC-AAATGCGTTTGAGAAGTTTCTAGAAGAGTC-A 1434
Query 1436 A-AAAGGCAAGAGAAAGGGGAGGTGATGAGAACGACATCGTTTTTTGCGTTGATGATGAT 1494
| |||||||| ||| || ||| ||||||||||||||||| ||| |||||| |||||||||
Sbjct 1435 AGAAAGGCAAAAGATAGAGGATGTGATGAGAACGACATCATTTATTGCGTCGATGATGAT 1494
Query 1495 GATGATCATAATGTTGTGAAACCACCACCATCACAATCAGA-GCCATCACATGCTACTCC 1553
|| ||||| ||||||||| |||||||| |||||| ||||| || |||| ||||| ||||
Sbjct 1495 CATCATCATCATGTTGTGATACCACCACAATCACATTCAGAAGC-ATCAAATGCTGCTCC 1553
Query 1554 T 1554
|
Sbjct 1554 T 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5