BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03550.1
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477600 jgi|Araly1|477600|fgenesh2_kg.3__301__AT3G03550.1 1631 0.0
Ahg488627 jgi|Araly1|488627|fgenesh2_kg.6__1761__AT5G17600.1 224 1e-57
> Ahg477600 jgi|Araly1|477600|fgenesh2_kg.3__301__AT3G03550.1
Length=1345
Score = 1631 bits (883), Expect = 0.0
Identities = 1178/1309 (90%), Gaps = 66/1309 (5%)
Strand=Plus/Plus
Query 130 ATGGGTTCAACAGGAAACCCTAATCCATGGGGTACAACATACGATTCATACAGAGACTGT 189
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 68 ATGGGTTCAACAGGAAACCCTAATCCATGGGGT---ACATACGATTCATACAGAGACTGT 124
Query 190 TCTCAAGGAGTATGCAGTGTCTATTGCCCTCAATGGTGTTACGTCATCTtccctcctcct 249
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 125 TCTCAAGGAGTATGCAGTGTCTACTGCCCTCAATGGTGTTACGTCATCTTCCCTCCTCCT 184
Query 250 ccttccttctatctcgacgacgaagacgactcttcctcctctgatttctctcctctcctc 309
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 185 CCTTCCTTCTACCTCGACGACGAAGACGATTCTTCCTCCTCTGATTTCTCTCCTCTCCTC 244
Query 310 ATCGCTCTCATCGGAATCCTCGCTAGCGCCTTCATCCTCGTCAGCTACTACACTCTCATC 369
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 245 ATCGCTCTTATCGGAATCCTCGCTAGTGCCTTCATCCTCGTCAGCTACTACACTCTCATC 304
Query 370 TCCAAATACTGCCACCGCCGTCGCCACAACTCCTCCT-CT--ACCTCCGCCGCAGCTATA 426
||||||||||||||||||||||| ||||||||||||| || ||||||||||||| ||||
Sbjct 305 TCCAAATACTGCCACCGCCGTCGTCACAACTCCTCCTCCTCCACCTCCGCCGCAGTTATA 364
Query 427 AACAGAATCTCATCAGATTACACCTGGCAAGGAACcaacaacaacaacaacaacGGAGCT 486
||| | | ||| | || | | | | | | | | || || | ||| | ||||
Sbjct 365 AACCG-AGATCA-CGGAAT-CTCAT--C-A-G-----ATTAC-AC-ATGGCAA-GAAGCT 409
Query 487 ACGAATCCGAATCAAACGATTGGTGGTGGTGGTGGCGATGGACTCGATGAATCTCTGATT 546
||||||||||||| |||| | |||||||||| ||||||||||||||||||||||||
Sbjct 410 ACGAATCCGAATCCGACGA-T--TGGTGGTGGT---GATGGACTCGATGAATCTCTGATT 463
Query 547 AAATCGATAACTGTTTACAAATACAGAAAGATGGATGGATTTGTTGAATCTTCAGATTGC 606
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 464 AAATCGATTACTGTTTACAAATACAGAAAGATGGATGGATTTGTTGAATCATCAGATTGT 523
Query 607 TCTGTTTGTTTAAGCGAGTTTCAAGAGAACGAGAGCTTGAGATTGTTACCTAAATGCAAC 666
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 524 TCTGTTTGTTTAAGCGAGTTTCAAGAAAACGAGAGCTTGAGATTGTTACCTAAATGTAAC 583
Query 667 CACGCGTTTCACGTTCCTTGTATTGATACTTGGTTGAAATCTCACTCTAATTGTCCTCTC 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 CACGCGTTTCACGTTCCTTGTATTGATACTTGGTTGAAATCTCACTCTAATTGTCCTCTC 643
Query 727 TGCCGCGCCTTCAT---C---G-TCA-----CTTCCTCCGCCGTTGAGATCGTCGATTTA 774
||||| || ||||| | | ||| |||||||||||||||||||||||||| ||
Sbjct 644 TGCCGTGCTTTCATCGCCGGAGTTCACGTCGCTTCCTCCGCCGTTGAGATCGTCGATGTA 703
Query 775 ACCAATCAACAGATCGTTACGGAGAACAACTCGATTTCGACCGGAGATGATTCCGTCGTT 834
|||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 704 ACCAATCAACCGATCGCTACAGAGAACAACTCGATTTCGATCGGAGATGATTCCGTCG-T 762
Query 835 GTCGTTAACTTAGATCTGGAAAATTCTAGATCTCGGAATGAGACGGTTAATGAAGGATCG 894
| |||||||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 763 -T-ATTAACTTAGATCTGGAAAATTCTAGATCTCGGAATGAGGCGGTTAACGGCGGATCG 820
Query 895 ACGCCGAAACCACCGGAGATGCAGGA-TTCAAGAGACGGAG-A-A-GA---G---CGGAG 944
||||||||||| |||||||||||||| || ||||||||||| | | || | |||||
Sbjct 821 ACGCCGAAACCGCCGGAGATGCAGGAGTT-AAGAGACGGAGAAGAGGAGGTGACTCGGAG 879
Query 945 ATCGGCGTCGTTAAACTCAGGCGGCGGTGTGGTATCGATCGCAGATATACTAAGGGAGAT 1004
||| ||||||||||||||| ||| || ||||||||||||||| |||||||||||||||||
Sbjct 880 ATCAGCGTCGTTAAACTCAAGCGCCGCTGTGGTATCGATCGCTGATATACTAAGGGAGAT 939
Query 1005 TGAAGACGACGAAGAATCAGCGGGTGTAGGAACTTCTCGGTGGGTAGAAGAAGGGGAAGG 1064
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TGAAGACGAAGAAGAATCAGCGGGTGTAGGAACTTCTCGGTGGGTAGAAGAAGGGGAAGG 999
Query 1065 AGAGAAGACGCCTCCGCCGTCAGGATCGGCGGCGAATCAAACAAACGGAATTTCGAATTT 1124
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1000 AGAGAAGACGCCTCCGCCGTCAGGATCGTCGGCCAATCAAACAAACGGAATTTCGAATTT 1059
Query 1125 TCTGGTTCGGAGTTCAATGGCGGCGATGAAGAGATCTGGTTACGATAGAGCAAAAAATTA 1184
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1060 TCTGGTTCGGAGTTCAATGGCGGCGATGAAGAGATCTGGTTATGATAGGGCAAAAAATTA 1119
Query 1185 CCGTTTACCGAAATAAGTTATaaaaaaaa-aataa--aa-aa-at--agggaatttgaaa 1237
|||||||||||| ||||||| |||||||| || || || || || ||||||||||||
Sbjct 1120 CCGTTTACCGAAGTAAGTTAAAAAAAAAAGAA-AAGGAATAATATTTAGGGAATTTGAAT 1178
Query 1238 ttatttttaaaaatatcaaaaaagtgctgattggcttttttaaaaaaaTCTATAT-TTTA 1296
|||||||| ||| | ||||||||||||||||||||||||| ||||| | ||| | ||||
Sbjct 1179 TTATTTTTCAAAGTGTCAAAAAAGTGCTGATTGGCTTTTT-AAAAAGTT-TATGTATTTA 1236
Query 1297 GTTTTGGTAATCTT-ATTATAACAATCAGAATCATTGT-AAACCATTTGAGAAACAGAGC 1354
|||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1237 GTTTTGGTAATCTTTATTATACCAATCAGAATCATTGTCAAACCATTTGAGAAACAGAGT 1296
Query 1355 AATCAAAGAGTTTTGAATTTACCGCCCAAATATTCTTACGTAttttttt 1403
|||| ||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 1297 AATCGAAGAGTTTTGAATTTACCGCCCATATATTCTTAGGTGTTTTTTT 1345
> Ahg488627 jgi|Araly1|488627|fgenesh2_kg.6__1761__AT5G17600.1
Length=1303
Score = 224 bits (121), Expect = 1e-57
Identities = 224/271 (83%), Gaps = 17/271 (6%)
Strand=Plus/Plus
Query 144 AAACCCTAATCCATGGGGTACAACATACGA-T--TCATACAGA-GACTGTTCTCAAGGAG 199
|||||||||||||| ||| || ||||||| | || |||| | || || |||||||||
Sbjct 118 AAACCCTAATCCAT--GGT-CACCATACGATTCCTCCTACA-ACGATTGCTCTCAAGGAA 173
Query 200 TATGCAGTGTCTATTGCCCTCAATGGTGTTACGTCATCTtccctcctcctccttccttct 259
| |||| |||| || ||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 174 TCTGCAACATCTACTGTCCTCAATGGTGTTACCTAATCTTCCCTCCTCCTCC-TCCTTCT 232
Query 260 atc-tcgacgacgaagacgac-tcttcctcct-ct-ga-tttctctcctctcctcATCGC 314
|| || |||||| ||| | || ||||||| || | |||||||||||||||||||||
Sbjct 233 TTCTTCCTCGACGACGAC-TCTTCCTCCTCCTCCTCCAGTTTCTCTCCTCTCCTCATCGC 291
Query 315 TCTCATCGGAATCCTCGCTAGCGCCTTCATCCTCGTCAGCTACTACACTCTCATCTCCAA 374
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TCTCATCGGAATCTTAACCAGCGCCTTCATCCTCGTCAGCTACTACACTCTCATCTCCAA 351
Query 375 ATACTGCCACCGCCGTCGCCACAAC-TCCTC 404
||||| || |||| | ||| ||| |||||
Sbjct 352 GTACTGTCATCGCCACCACCA-AACCTCCTC 381
Score = 217 bits (117), Expect = 2e-55
Identities = 187/220 (85%), Gaps = 8/220 (4%)
Strand=Plus/Plus
Query 519 TGGCGATGGACTCGATGAATCTCTGATTAAATCGATAACTGTTTACAAATAC-AGAAA-G 576
||| ||||||||| | || ||| |||||||||| || || ||||| |||||| ||||| |
Sbjct 445 TGGAGATGGACTCAACGACTCTATGATTAAATCAATCACAGTTTATAAATACAAGAAAGG 504
Query 577 ATGGATGGATTTGTTGAAT-CTTCAGATTGCTCTGTTTGTTTAAGCGAGTTTCAAGAGAA 635
| |||||||| || | || ||| ||||||||||||||||| || || ||| |||| ||
Sbjct 505 A--GATGGATTCGTCG-ATGGTTCTGATTGCTCTGTTTGTTTGAGTGAATTTGAAGAAAA 561
Query 636 CGAGAGCTTGAGATTGTTACCTAAATGCAACCACGCGTTTCA-CGTTCCTTGTATTGATA 694
|||||| ||||||||||| || ||||| || ||||||||||| | |||||||||||||||
Sbjct 562 CGAGAGTTTGAGATTGTTGCCGAAATGTAATCACGCGTTTCATC-TTCCTTGTATTGATA 620
Query 695 CTTGGTTGAAATCTCACTCTAATTGTCCTCTCTGCCGCGC 734
|||||||||||||||||||||||||||| || ||||||||
Sbjct 621 CTTGGTTGAAATCTCACTCTAATTGTCCACTTTGCCGCGC 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5