BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03570.1
Length=2325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477602 jgi|Araly1|477602|fgenesh2_kg.3__303__AT3G03570.1 3373 0.0
Ahg923833 jgi|Araly1|923833|scaffold_105114.1 1378 0.0
> Ahg477602 jgi|Araly1|477602|fgenesh2_kg.3__303__AT3G03570.1
Length=2273
Score = 3373 bits (1826), Expect = 0.0
Identities = 2069/2183 (95%), Gaps = 30/2183 (1%)
Strand=Plus/Plus
Query 1 GTTGGTAAACCGTC-CGGTACAAGATTTTTAGTCATCCAAAAGGTC-GATTCGCCGATCT 58
|||||||||||| | |||||| | | ||||||||||||| ||| |||||||||||||
Sbjct 1 GTTGGTAAACCG-CTCGGTAC-A-A----TAGTCATCCAAAA-GTCGGATTCGCCGATCT 52
Query 59 AGAAGACGACGACGACGACTACCAAACACTCCGATCAACGGTCCTCCGATTCTCTCTCGC 118
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 53 ---AGACGACGACGACG---ACCAAACACTCCGATCAACGGTCCTCCGATTCCCTCTCGC 106
Query 119 TTTCGTGGCGACCTCAAAAATGTCGCAGCAAATCAGCGGTAATAATAATATCCCGCTGAG 178
|||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 107 TTTCGTCTTGACCTGAGAAATGTCGCAGCAAATCAGCGG---TAATAATATCCCGCTGAG 163
Query 179 TGAAGTTTACTGGTCTCTCGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGACTT 238
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 164 TGAAGTTTACTGGTCTCTTGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGACTT 223
Query 239 GCCCTTCTATGAACGCTCCAGGTATGAGAACTATTTCTTCAAGGTATTCAAAGTATACAC 298
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 224 GCCCTTCTATGAACGCACCAGGTATGAAAACTATTTCTTCAAGGTATTCAAAGTATACAC 283
Query 299 ACAACTATGGAAGTTTCAGCAAGAGAATAGGCAGAAGCTTGTTGAAGCTGGACTTAAGAG 358
||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 284 ACAGTTATGGAAGTTTCAGCAAGAAAATCGGCAGAAGCTTGTTGAAGCTGGACTTAAGAG 343
Query 359 ATGGGAGATTGGAGAGATCGCTTCTCGCATTGCCCAGCTTTACTATGGACATTATATGCG 418
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 344 ATGGGAGATTGGAGAGATCGCATCTCGAATTGCACAGCTTTACTATGGACATTATATGCG 403
Query 419 AACAAGTGATGCTGGTTACTTATCCGAGTCCTATGTATTCTACGAAGCAATACTCACTAG 478
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 404 GACAAGTGATGCCGGTTACTTATCTGAGTCCTATGTATTCTACGAAGCAATACTCACTAG 463
Query 479 GGAGTACTTCAAAGATGGATTGTTTCAGGATCTCAATATTGCAAACAAGCAGCTTCGGTT 538
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 464 GGAGTACTTCAAAGAAGGATTGTTTCAGGATCTCAATATTGCAAACAAACAGCTACGGTT 523
Query 539 TCTTGCAAGGTTTCTTATGGTGTGTTTGGTTCTTGGCCGCCGTGAGATGGTGCATCAACT 598
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 524 TCTTGCAAGGTTTCTTATGGTGTGTTTGGTCCTTGGCCGCCGTGAGATGGTGCATCAACT 583
Query 599 CGTTGATCAGTTTAAACGGTTGATTGATGAATGCAAGAGGACATTCCAGGAAACCGATTT 658
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 584 TGTTGATCAGTTTAAACGGTTGATAGATGAATGCAAGAGGACATTCCAGGAAACCGATTT 643
Query 659 TAAGGAATGGAAGGTGGTGGCGCAGGAAATAGTTAGATTTCTGAAATCGGACACTGCATT 718
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 644 TAAAGAATGGAAGGTGGTGGCGCAGGAAATAGTTAGATTTCTGAAATCTGACACTGCATT 703
Query 719 CATGAACATTAGACCTCTAAGATACAGTCTTGTATTGGATCCTAATCTGGATGCTGGTAC 778
||||| || |||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 704 TATGAATATCAGACCTCTAAGATACAGTCTTGTACTGGATCCTAATTTGGATGCTGGTAC 763
Query 779 TCCGCGTGCAAGTAGGTCTTTAAGGTTGACGGATGCTATCTTGAGCAGTTATTACTGTAA 838
|||||||||||||| |||||||||||||||||||| ||||||||||| || || | |||
Sbjct 764 ACCGCGTGCAAGTAGATCTTTAAGGTTGACGGATGCAATCTTGAGCAGCTACTATTATAA 823
Query 839 CGAGGTCAAGTATTCGGAGCTCACGCTCGATTCTTTTAGGATGCTTCAATGCTTAGAGTG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CGAGGTCAAGTATTCGGAGCTCACGCTCGATTCTTTTAGGATGCTTCAATGCTTAGAGTG 883
Query 899 GGAACCGAGTGGTTCACTATATCAATCAACTGGTGCTAAAATGGGTCAGAATGCTCCCGT 958
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 884 GGAACCGAGTGGTTCACTATATCAATCAACTGGTGCAAAAATGGGTCTGAATGCTCCCGT 943
Query 959 TGGAGTTGCTCGTATTAACTCCCAGAGCATGAATGATCCTACTTTGCCACCTAACCCTCG 1018
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TGGAGTTTCTCGTATTAACTCCCAGAGCATGAATGATCCTACTTTGCCACCTAACCCTCG 1003
Query 1019 CAAAGCTGTCCTTTATCGTCCATCCATAACACATTTTTTGGCTGTTTTGGCCACCATTTG 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1004 CAAAGCTGTCCTTTATCGTCCATCCATAACACATTTTTTGGCTGTTTTGGCCACTATTTG 1063
Query 1079 TGAGGAGCTTCCTTCTCATGGCATTCTTTTATTATATCTGTCTGCTTCTGGCAAGATTGG 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1064 TGAGGAGCTTCCTTCTCATGGCATTCTTTTATTATATCTGTCTGCTTCTGGCAAGAATGG 1123
Query 1139 ACAGATTTCATCATCTCCCTTGAGTGCTAGAAGTGCAACCAGTGTTGAGGAGAATATCTT 1198
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1124 ACAGATTTCATCATCTCCTTTGAGTGCTAGAAGTGCAACCAATGTTGAGGAGAATATCTT 1183
Query 1199 GAGAGACTTTGAATCTCACACAATCAAACAAGAGACAGAACCATCACTTCAAATTACGCC 1258
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||
Sbjct 1184 GAGAGACTTTGAATCTCACACAATCAAACAAGAGAGAGACCCATCACTTCAAATTACCCC 1243
Query 1259 ATCTGGTCAGTCTTTGAGGCAAATCAGTGAGGACGCAGTCAGTACCCCATGTGGTTTGTC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1244 ATCTGGTCAGTCTTTGAGGCAAATCAGTGAGGACGCAGTCAGTACCCCATGTGGTCTGTC 1303
Query 1319 TTTTGGCAGTCATGGGCTCACAGGATCAAGCTACATATATCCCTCTGATTTAGTTCCATT 1378
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1304 TTTTGGCAGTCATGGGCTCACAGGATCAAGCTACATCTACCCCTCTGATTTAGTTCCATT 1363
Query 1379 TACAAGGAAACCTCTTTTCATAATCATTGACAGTGATAGCAGCACAGTTTTTAAAAATAT 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1364 TACAAGGAAACCTCTTTTCATAATCATTGACAGTGATAGCAGCACAGTTTTTAAGAATAT 1423
Query 1439 TTGTGGAGCGGAGAAAGGAGAACCAGCCGCGTTACTTCTGTCTCCATCACATACTCCTCC 1498
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1424 TTGTGGAGCGGAGAAAGGAGAACCAGCCGCATTGCTTCTGTCTCCATCACATACTCCTCC 1483
Query 1499 GCTTATCTCTGCTGATTTCTCTCGTCAACCTAGTGGTAGCCTTTTCACCATTTTTCTCAC 1558
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 GCTTATTTCTGCTGATTTCTCTCGTCAACCTAGTGGTAGCCTTTTCACCATTTTTCTCAC 1543
Query 1559 GTCACCAGTCCAAGCGTTTTGCTTGTTAAGTGAGATTTCCGCCTCTGATATGGAAACGGA 1618
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1544 GTCACCAGTCCAAGCGTTTTGCTTGTTAAGTGGGATTTCCGCCTCTGATATGGAAACGGA 1603
Query 1619 TATTTTTACTAAGGCCGAGAAGCTTCTTTCCTCGTCTATGAACGAATGGGCTTCGACATT 1678
||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1604 TATCTTAACTAAGGCCGAGAAGCTTCTTTCCTCGTTTATGAACGAATGGGCTTCGACATT 1663
Query 1679 GGCAACATCAGATACCCTTCACCCTGTTTGGTCACAGATACTAAAAGATCCCTTCTTGAG 1738
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 1664 GGCAACATCAGATACCCTTCACCCAGTTTGGTCACAAATACTAAAAGATCCATTCTTGAG 1723
Query 1739 ACGACTACTCCTAAGATTCATATTCTGCCGGGCTGTCTTGGCACTGTACACTCCAGTCTT 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1724 ACGACTACTCCTAAGATTCATATTCTGCCGGGCTGTCTTGGCACTGTACACTCCAGTCTT 1783
Query 1799 CAATAACAAACAAAATCAGCCAGAGTGCTGTCCGTCTCTCCCAGAATCGCTATTACCAAC 1858
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1784 CAATAACAAACAAAATCAGCCAGAGTGCTTTCCGTCTCTCCCAGAATCGCTAGTACCAAC 1843
Query 1859 TGCTCCTGCTGTTCAATCCGCTGTGTTTCAGATGGCCAATGTATTTGGTGCTACAAGTAA 1918
||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 1844 TGCTCCTGCCGTTCAATCCGCTGTGCTTCTGATGGCCAATGTATTTGGGGCTACAAGTAA 1903
Query 1919 ATTTACTATACCTCAAGATATCACAATGCTCGAAAGCTTCTAAGAAGCTTACCTCTGCGA 1978
||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1904 ATTTACTCTACCTCAAGATATCACAATGCTCGAAAGCTTCTAAGATGCT-ACCTCTGCGA 1962
Query 1979 CGATAAGAGCTTCGGTCTGAAA-TATTCTTGTT-CAAATCGGGAATCTCGATTTGGTTTC 2036
|||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||
Sbjct 1963 CGATAAGAGCTTCGGTCTGAAAATATTCTT-TTGCAAATTGGGAATCTCGATTTGGTTTC 2021
Query 2037 CCGGTAAGGTATACTAT--TATTAGATTTGGAGAATGCTTCTTCCATGTCATTGGAGCAT 2094
|| || |||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 2022 CCCTTAGGGTAAACTATGGTTTTAGATTTGGAGAATGCTTCTTCCATGTCATTGGAGCAT 2081
Query 2095 TATGACTGAACATCTTTTGAGATTAATGGTGCAAGATCATTTTGGTGTGAACAAAGTAA- 2153
|||||| |||||||||||||||| ||||| ||||| |||||||||||| |||| |||
Sbjct 2082 TATGACCAAACATCTTTTGAGATTTATGGTTCAAGAACATTTTGGTGTGC-CAAATTAAC 2140
Query 2154 ---GTGTTTGATGCAGAACATGT 2173
||||||||||||||||||||
Sbjct 2141 AAAGTGTTTGATGCAGAACATGT 2163
Score = 119 bits (64), Expect = 1e-25
Identities = 97/111 (87%), Gaps = 9/111 (8%)
Strand=Plus/Plus
Query 2222 TTGTATATTGA-TCAACTTTTACAGTCTAATGGAAATTCACCATCTTCTGTAATTCGATC 2280
||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 2163 TTGTATATTGATTCAACTTTTACAGTCTAATGGAAATTCAACATCTACTGTAATTCGGTC 2222
Query 2281 GAGAAAATAAGAGGTTCACCA-CTG-----T-T-GATTGCGTTGTCGGTAT 2323
||| |||||||||||||||| ||| | | |||||||||||||||||
Sbjct 2223 AAGAGAATAAGAGGTTCACCATCTGAACACTGTTGATTGCGTTGTCGGTAT 2273
> Ahg923833 jgi|Araly1|923833|scaffold_105114.1
Length=1235
Score = 1378 bits (746), Expect = 0.0
Identities = 807/836 (97%), Gaps = 5/836 (1%)
Strand=Plus/Plus
Query 513 AATATTGCAAACAAGCAGCTTCGGTTTCTTGCAAGGTTTCTTATGGTGTGTTTGGTTCTT 572
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 352 AATATTGCAAACAAACAGCTACGGTTTCTTGCAAGGTTTCTTATGGTGTGTTTGGTCCTT 411
Query 573 GGCCGCCGTGAGATGGTGCATCAACTCGTTGATCAGTTTAAACGGTTGATTGATGAATGC 632
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 412 GGCCGCCGTGAGATGGTGCATCAACTTGTTGATCAGTTTAAACGGTTGATAGATGAATGC 471
Query 633 AAGAGGACATTCCAGGAAACCGATTTTAAGGAATGGAAGGTGGTGGCGCAGGAAATAGTT 692
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 472 AAGAGGACATTCCAGGAAACCGATTTTAAAGAATGGAAGGTTGTGGCGCAGGACATAGTT 531
Query 693 AGATTTCTGAAATCGGACACTGCATTCATGAACATTAGACCTCTAAGATACAGTCTTGTA 752
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 532 AGATTTCTGAAATCTGACACTGCATTTATGAACATTAGACCTCTAAGATACAGTCTTGT- 590
Query 753 T-TGGATCCTAATCTGGATGCTGGTACTCCGCGTGCAAGTAGGTCTTTAAGGTTGACGGA 811
| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 591 TCTGGATCCTAATCTGGATGCTGGTACACCGCGTGCTAGTAGATCTTTAAGGTTGACGGA 650
Query 812 TGCTATCTTGAGCAGTTATTACT-GTAACGAGGTCAAGTATTCGGAGCTCACGCTCGATT 870
||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 651 TGCAATCTTGAGCAGCTATTA-TCATAACGAGGTCAAGTATTCGGAGCTCACGCTCGATT 709
Query 871 CTTTTAGGATGCTTCAATGCTTAGAGTGGGAACCGAGTGGTTCACTATATCAATCAACTG 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 CTTTTAGGATGCTTCAATGCTTAGAGTGGGAACCGAGTGGTTCACTATATCAATCAACTG 769
Query 931 GTGCTAAAATGGGTCAGAATGCTCCCGTTGGAGTTGCTCGTATTAACTCCCAGAGCATGA 990
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 770 GTGCTAAAATGGGTCAGAATGCTCCCGTTGGAGTTTCTCGTATTAACTCCCAGAGCATGA 829
Query 991 ATGATCCTACTTTGCCACCTAACCCTCGCAAAGCTGTCCTTTATCGTCCATCCATAACAC 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 ATGATCCTACTTTGCCACCTAACCCTCGCAAAGCTGTCCTTTATCGTCCATCCATAACAC 889
Query 1051 ATTTTTTGGCTGTTTTGGCCACCATTTGTGAGGAGCTTCCTTCTCATGGCATTCTTTTAT 1110
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 890 ATTTTTTGGCTGTTTTGGCCACTATTTGTGAGGAGCTTCCTTCTCATGGCATTCTTTTAT 949
Query 1111 TATATCTGTCTGCTTCTGGCAAGATTGGACAGATTTCATCATCTCCCTTGAGTGCTAGAA 1170
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 950 TATATCTGTCTGCTTCTGGCAAGAATGGACAGATTTCATCATCTCCTTTGAGTGCTAGAA 1009
Query 1171 GTGCAACCAGTGTTGAGGAGAATATCTTGAGAGACTTTGAATCTCACACAATCAAACAAG 1230
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GTGCAACCAATGTTGAGGAGAATATCTTGAGAGACTTTGAATCTCACACAATCAAACAAG 1069
Query 1231 AGACAGAACCATCACTTCAAATTACGCCATCTGGTCAGTCTTTGAGGCAAATCAGTGAGG 1290
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AGAGAGACCCATCACTTCAAATTACGCCATCTGGTCAGTCTTTGAGGCAAATCAGTGAGG 1129
Query 1291 ACGCAGTCAGTACCCCATGTGGTTTGTCTTTTGGCAGTCATGGGCTCACAGG-ATC 1345
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1130 ACGCAGTCAGTACCCCATGTGGTCTGTCTTTTGGCAGTCATGGGCTCACAGGTATC 1185
Score = 542 bits (293), Expect = 5e-153
Identities = 331/349 (95%), Gaps = 3/349 (1%)
Strand=Plus/Plus
Query 117 GCTTTCGTGGCGACCTCAAAAATGTCGCAGCAAATCAGCGGTAATAATAATATCCCGCTG 176
|||||||| | ||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct 1 GCTTTCGTCGTGACCTGAGAAATGTCGCAGCAAATCAGCGG---TAATAATATCCCGCTG 57
Query 177 AGTGAAGTTTACTGGTCTCTCGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGAC 236
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 58 AGTGAAGTTTACTGGTCTCTTGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGAC 117
Query 237 TTGCCCTTCTATGAACGCTCCAGGTATGAGAACTATTTCTTCAAGGTATTCAAAGTATAC 296
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 118 TTGCCCTTCTATGAACGCTCCAGGTATGAAAACTATTTCTTCAAGGTATTCAAAGTATAC 177
Query 297 ACACAACTATGGAAGTTTCAGCAAGAGAATAGGCAGAAGCTTGTTGAAGCTGGACTTAAG 356
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 178 ACACAGTTATGGAAGTTTCAGCAAGAGAATCGGCAGAAGCTTGTTGAAGCTGGACTTAAG 237
Query 357 AGATGGGAGATTGGAGAGATCGCTTCTCGCATTGCCCAGCTTTACTATGGACATTATATG 416
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 238 AGATGGGAGATTGGAGAGATCGCATCTCGAATTGCACAGCTTTACTATGGACATTATATG 297
Query 417 CGAACAAGTGATGCTGGTTACTTATCCGAGTCCTATGTATTCTACGAAG 465
|| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 298 CGGACAAGTGATGCCGGTTACTTATCCGAGTCTTATGTATTCTACGAAG 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87569473255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5