BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03590.1
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477604 jgi|Araly1|477604|fgenesh2_kg.3__305__AT3G03590.1 1057 0.0
Ahg942505 jgi|Araly1|942505|scaffold_603049.1 211 7e-54
> Ahg477604 jgi|Araly1|477604|fgenesh2_kg.3__305__AT3G03590.1
Length=793
Score = 1057 bits (572), Expect = 0.0
Identities = 713/774 (92%), Gaps = 38/774 (5%)
Strand=Plus/Plus
Query 173 TTAATCCTTGAAAGTTGAAAGCTTTAGTGTCAAAA-GACAAGTTTCATATCTCAAACGTC 231
||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||
Sbjct 39 TTAATCCTTGAAAGTTGAAAGCTTTGGTATCAAAATGACAAGTTTCAAATCTCAAACGTC 98
Query 232 GTCACGTGGCAGAGTCAAAGGTCAAACCTTTTTCTCCC-AAAA---ACTTTCCTAAATTC 287
| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 99 GCCACGTGGCAGAGTCAAAGGTCAAACCTTTTTCTCCCAAAAACTTACTTTCCTAAATTC 158
Query 288 TCCAAAATCACACTCTCAGCGAAGGAGAAGAAAAAACTAGATTGGCGAGAAAATGTCTTC 347
||||||||||||||||| | |||||||||| || | | | |||||||||||
Sbjct 159 TCCAAAATCACACTCTCGGAGAAGGAGAAG----AA--A-A------A-AAAATGTCTTC 204
Query 348 CGTTGCAGCTATGGTTTTCAGAGGAGCTAGATCGCTTCTAGCTCCTGCTTCTCGAGCCAC 407
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 205 CGTTGCAGCTATGGTTTTCAGGGGAGCTAGATCGCTTCTAGCTCCTGCTTCTCGAGCCAC 264
Query 408 CTCTTCTTTGGTTTCAGCTGGATCCACTAAGAAACCCGCGGCG-AAAC-----CAAAGGC 461
|||||||||||||||||||||||||||||||||| | |||||| |||| | |||||
Sbjct 265 CTCTTCTTTGGTTTCAGCTGGATCCACTAAGAAAACGGCGGCGAAAACAAAGGCCAAGGC 324
Query 462 CAAGGCTAAGCCTAAGCCAAAGGCGAAATCAGACTCTCCGGCAAAGAAGACACCGAGGTC 521
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 325 CAAGGCTAAGCCTAAGCCAAAGGCGAAATCAGAGTCTCCGGCAAAGAAGACACCGAGGTC 384
Query 522 TACCGGAATCTTTAAGGTGACTCCTGTGTCTCCAGTTCTCGCTCAGTTCCTTGGTACCGG 581
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 TACCGGACTCTTTAAGGTGACTCCTGTGTCTCCAGTTCTCGCTCAGTTCCTTGGTACCGG 444
Query 582 TGAAACAT-CACGTACCGACGCCATCAAGGGGATTTGGACCTACATCAAGTCCCACGATC 640
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 445 TGAAAC-TACACGTACCGACGCCATCAAGGGGATTTGGACCTACATCAAATCCCACGATC 503
Query 641 TTCAGAACCCAGCTGACAAGAGGGAGATTTTCTGCGATGAGACACTGAAGCTAATCTTTG 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TTCAGAACCCAGCTGACAAGAGGGAGATTTTCTGCGATGAGACACTGAAGCTAATCTTTG 563
Query 701 AAGGGAAAGACAAAGTTGGGTTTCTGGAGATTTCAAAACTCTTGTCCCCGCACTTTGTGA 760
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 564 AAGGGAAAGACAAAGTTGGGTTTCTAGAGATTTCAAAACTCTTGTCCCCGCACTTTGTGA 623
Query 761 AGACTGCTTGACCAAATAACTAGCTTAGTTTGGAAACTCCTGACGATTTGGTTTTTTAGT 820
||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 624 AGACTGCTTGACCAA-TAACTAGCTTAGTTTGGAAACTCCTGA---TTTGGTTTTTGAGT 679
Query 821 TAGCTCTTTCA-AGTGATCTTATCTTGTTAATGTTGTCAATATCTTTTAACTCTTCTCGT 879
||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 680 AAGCTCTTTCTGAGTGATCTTATCTTGTTAATGTTGTCAATATCTTTCAACTCTTTTCCT 739
Query 880 TCCTGTTACCAAACATGGTTT-----TT-GACTAATGAAGAAATGTTTTGGCAT 927
|||| || ||||||||||||| || ||||||||||||||| |||||||||
Sbjct 740 TCCTCTTCCCAAACATGGTTTGACACTTTGACTAATGAAGAAATATTTTGGCAT 793
> Ahg942505 jgi|Araly1|942505|scaffold_603049.1
Length=516
Score = 211 bits (114), Expect = 7e-54
Identities = 122/126 (97%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 642 TCAGAACCCAGCTGACAAGAGGGAGATTTTCTGCGATGAGACACTGAAGCTAATCTTTGA 701
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 103 TCAGAACCTAGCTGACAAGAGGGTGATTTTCTGCGATGAGACACTGAAGCTAATCTTTGA 162
Query 702 AGGGAAAGACAAAGTTGGGTTTCTGGAGATTTCAAAACTCTTGTCCCCGCACTTTGTGAA 761
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 163 AGGGAAAGACAAAGTTGGGTTTTTGGAGATTTCAAAACTCTTGTCCCCGTACTTTGTGAA 222
Query 762 GACTGC 767
||||||
Sbjct 223 GACTGC 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34463116968
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5