BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03600.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477605 jgi|Araly1|477605|fgenesh2_kg.3__306__AT3G03600.1 1471 0.0
> Ahg477605 jgi|Araly1|477605|fgenesh2_kg.3__306__AT3G03600.1
Length=877
Score = 1471 bits (796), Expect = 0.0
Identities = 851/878 (97%), Gaps = 2/878 (0%)
Strand=Plus/Plus
Query 1 AATTCAATCTGCGAATTTCTCTTAAACCCTAACCCTCTCGCTGCCGTCCGGTGGTTTTTC 60
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTCAGTCTGCGAATTTATCTTAAACCCTAACCCTCTCGCTGCCGTCCGGTGGTTTTTC 60
Query 61 CGACGACGAACTATGACGATTCACGCTGCAGTAATCCAGAAGCTTCTGAACACCGGAGCA 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGACGACGAACAATGACGATTCACGCTGCAGTAATCCAGAAGCTTCTGAACACCGGAGCA 120
Query 121 CATCTCGGCCGTCGTGCCGCCGAGCACCATTTCAAGCAATACGCTTACGGGACGCGTAAC 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATCTCGGCCGTCGCGCCGCCGAGCACCATTTCAAGCAATACGCTTACGGGACGCGTAAC 180
Query 181 GGAATGACAATTATCGACTCCGACAAAACCCTAATTTGCCTCCGTAGCGCCGCTCATTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAATGACAATTATCGACTCCGACAAAACCCTAATTTGCCTCCGTAGCGCCGCTCATTTC 240
Query 241 GTCGCTAACCTCGCCCACATGAGAGGTAACATCTTCTTCGTCAACACGAATCCTCTCTTC 300
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 241 GTCGCTAATCTCGCCCACATGAGAGGTAACATCTTCTTCGTCAACACAAACCCTCTCTTC 300
Query 301 GACGAAATCATTGAGCTCACTTCTCGTCGGATCCAAGGAGATTCGTATAATCACAACCGT 360
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 301 GACGAAATCATTGAGCTCACTTCTCGTCGGATCCAAGGCGATTCTTATAATCACAACCGT 360
Query 361 GCGATGAATCTGTGGAAGATGGGAGGGTTTTTGACTAACAGCTACAGTCCTAAGAAGTTT 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GCGATGAATCTGTGGAAGATGGGAGGGTTTTTGACTAACAGTTACAGTCCTAAGAAGTTT 420
Query 421 CGATCTAGGCATAAAAAGCTTTGCTTTGGTCCAACTACTATGCCTGATTGTGTCGTTGTG 480
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 CGATCTAGGCACAAAAAGCTTTGCTTTGGTCCAACTACTATGCCTGATTGTGTCGTCGTG 480
Query 481 TTTGATTCTGAGAGGAAGAGCTCTGTGATACTTGAGGCATCGAAGCTTCAGATTCCGGTT 540
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 481 TTTGATACTGAGAGGAAGAGTTCTGTGATACTTGAGGCCTCGAAGCTTCAGATTCCGGTT 540
Query 541 GTTGCAATTGTGGACCCGAATGTGCCATTGGAGTTCTTTGAGAAGATTACGTATCCTGTG 600
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GTTGCAATTGTGGATCCGAATGTGCCATTGGAATTCTTTGAGAAGATTACGTATCCTGTG 600
Query 601 CCAGCTCGTGATTCGGTCAAGTTTGTGTATTTGTTCTGTAATGTGATCACCAAGTGCTTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCAGCTCGTGATTCGGTCAAGTTTGTGTATTTGTTCTGTAATGTGATCACCAAGTGCTTT 660
Query 661 GTGGCAGAACAGATGAAGTTGGGGATCAAAGAAGGGAGCAATGAAGATTTGATGAAGGAT 720
|||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||
Sbjct 661 GTGGCAGAACAGATGAAGTTGGGGATCAAAGATGGGAGCAAAGAAGATATGATGAAGGAT 720
Query 721 TTAGCTGCTTGATTTTGATATTTGCAACAAAAGTATGAAACTTTACAGTTGTTTTTCTGA 780
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 TTAGCTGCTTGATTT-GATATTTGCAACAAAAGTATGAAACTTTATAGTTGTTTTTCTGA 779
Query 781 GTCTGGAATAATTGTTCTTCAGAATTGTGGTTACTTCAACTTTGAAATTCTGGGAGTTTT 840
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 780 GTCTGGAATAATTGTTCTTCAGAATTGTGGTTTCTTCAACTTTGAAATTCTGAGTGTTTT 839
Query 841 TT-ACACATGGATGATTTTGTTTCTCTGATGGATATTT 877
|| |||||||||||||||||||||| ||||||||||||
Sbjct 840 TTTACACATGGATGATTTTGTTTCTGTGATGGATATTT 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5