BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03610.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477606 jgi|Araly1|477606|fgenesh2_kg.3__307__AT3G03610.1 1929 0.0
> Ahg477606 jgi|Araly1|477606|fgenesh2_kg.3__307__AT3G03610.1
Length=1199
Score = 1929 bits (1044), Expect = 0.0
Identities = 1162/1216 (96%), Gaps = 20/1216 (2%)
Strand=Plus/Plus
Query 17 GGAAATTTGGCGGCGACAGTTTCCTTTGGATTTCAGATTTCGTGAGCTTATTCTTACCTT 76
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 GGAAATTTGGCGGCGACAGTTTCCTTTGGGTTTCAGATTTCGTGAGCTTATTCTTACCTT 60
Query 77 TCTCTCGAAGGAAGCTCTCATCTTTTCACTCAGATCACGTTCCCTGGGCTTATTCGCTTG 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTCGAAGGAAGCTCTCATCTTTTCACTCAGATCACGTTCCCTGGGCTTATTCGCTTG 120
Query 137 TATCTGTTGATATACAAGATGGCATCTGCGACTCTGAGAAGGCGGCTTCATCACGGTGAT 196
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 121 TATCTGTTGATATACAAGATGGCATCTGCTACTCTAAGAAGGCGGCTTCATCATGGGGAT 180
Query 197 GTAGATGGGAGGAAGTATGAACGCTATGATGCAACAGACTCTGAAACTTTAAGTGAACCC 256
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 181 GTAGATGGGAGGAAGTATGAACGTTATGATGCAACAGACTCTGAAACTTTAAGCGAACCC 240
Query 257 TTGTTAGGAAGTAGTAGTACTGATAATAGTAGAAATGAGTACATTGAGGAGCGTACTCTG 316
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 241 TTGTTAGGAAGTAGTAGTACTGATAATAGTAGAGATGAGTACAATGAGGAGCGTACTCTG 300
Query 317 GAGGATATTTGGGAAGAAGAACGGAAGAGACAGCAAGTTCACTGGACGTTAATCTTTTCT 376
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GAGGATATTTGGGAAGAAGAACGGAAGAGACAGCAAGTTCACTGGACGTTGATCTTTTCT 360
Query 377 CAGTTGATTGCACAGTGGGCTCAGTGGATAGCCAAAATAGTCTTTGGATCTGGCTCACTT 436
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 CAGTTGATTGCACAATGGGCTCAGTGGATAGCCAAAATTGTCTTTGGATCTGGCTCACTT 420
Query 437 GTTGGGAGGTTTCTTTCTCTGCCTACATTTGGTCAAATAGGTACTGGTGGGAGGCT-TCT 495
|||||||||||||| || | ||||||||||||||||||||||||||||||||||| | |
Sbjct 421 TTTGGGAGGTTTCTT-CT-T-CCTACATTTGGTCAAATAGGTACTGGTGGGAGGCTAT-T 476
Query 496 GCCACCACCTCTTAGTATGTTGCAGGAAGAAAGGCTGAGAAATATTAAGCGAAGAATAGA 555
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 477 GCCACCGCCTCTTAGTATGTTGCAGGAAGAAAGGCTGAGAAACATTAAGCGAAGAATAGA 536
Query 556 AATCCCATTTGATGGATCTCGAATGGAGCATCAAGATGCTCTTAGACAACTATGGAGGCT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 537 AATCCCATTTGATGGATCTCGAATGGAGCATCAAGATGCTCTTAGACAACTATGGAGACT 596
Query 616 AGCTTATCCACAGAGAGAACTACCACCTCTTAAATCTGAACTCTGGAAGGAAATGGGTTG 675
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGCTTATCCACAGAGGGAACTACCACCTCTTAAATCTGAACTCTGGAAGGAAATGGGTTG 656
Query 676 GCAAGGAACAGACCCTTCAACAGATTTTCGAGGTGGAGGGTATATATCACTGGAGAATCT 735
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 657 GCAAGGAACAGACCCTTCAACAGATTTTCGAGGTGGAGGATATATATCACTGGAGAATCT 716
Query 736 AATCTTCTTTGCGAAGACCTATCCGGAATCATTCCAGAGATTGTTACATAAACAAGATGG 795
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 717 AATCTTCTTTGCGAAGACCTATCCGGAATCTTTCCAGAGACTGTTACATAAACAAGATGG 776
Query 796 AACTAGAGCGGAATGGGAATATCCTTTCGCGGTGGCTGGCATCAATATCTCATTCATGCT 855
||| || || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 777 AACAAGGGCCGAATGGGAATATCCTTTCGCGGTGGCTGGCATCAATATCTCATTCATGTT 836
Query 856 GGCACAAATGTTAGATCTTCAATCAGGTAAACCATCAACAATAGCCGGGATAAGATTCTT 915
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 837 GGCACAAATGTTAGATCTTCAAGCAGGTAAACCATCAACAATAGCCGGAATAAGGTTCTT 896
Query 916 GGGATTTCTGGAAGAAGACGAAATGGCATTCGATAATCTCTACTGTATAGCTTTCCAAAT 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGGATTTCTGGAAGAAGACGAAATGGCATTCGATAATCTCTACTGTATAGCTTTCCAAAT 956
Query 976 GATGGATGCACAATGGCTTGCTAGACGAGCTTCTTACATGGAATTCAATGACGTCCTGAA 1035
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 957 GATGGATGCACAATGGCTTGCTAAACGAGCTTCTTACATGGAATTTAATGACGTCCTGAA 1016
Query 1036 ATCGACGAGAGCACAATTGGAACGTGAGCTGGCACTGGATGATGTTTCAAGCATCACAGA 1095
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1017 ATCGACGAGAGCACAATTGGAACGTGAGCTGGCACTGGATGATGTTTCAAGCATCAGAGA 1076
Query 1096 CTTGCCTGCTTTCAATCTTTTGTACAAATAAATTGTTA-AATTT-CCTACAATTTCTATC 1153
||||||||||||||||||||||||||||||| || || ||||| |||| ||||||||||
Sbjct 1077 CTTGCCTGCTTTCAATCTTTTGTACAAATAA-TTAATATAATTTTCCTATAATTTCTATC 1135
Query 1154 TGTATTTAGATAATAATTATCTGAGAAATTCAGTGTAACAAATAATCAGTTTTTGCTGAA 1213
|||||||| | | |||| | | ||||||||||||||||||||||||||||||||
Sbjct 1136 TGTATTTA-A-A-TAAT-A----A----TTCAGTGTAACAAATAATCAGTTTTTGCTGAA 1183
Query 1214 ATTGCTCGGCAAGTAT 1229
|||||||||||| |||
Sbjct 1184 ATTGCTCGGCAAATAT 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5