BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03630.1
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927888 jgi|Araly1|927888|scaffold_300345.1 1951 0.0
> Ahg927888 jgi|Araly1|927888|scaffold_300345.1
Length=1261
Score = 1951 bits (1056), Expect = 0.0
Identities = 1192/1258 (95%), Gaps = 7/1258 (1%)
Strand=Plus/Plus
Query 26 AAACCTCGCCGGCGACGGAAAATGGCTTTCGCGTCTCCTTCGCTCCGTCTTCTTCCTCAG 85
||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1 AAACCTCACTGGCGACGGAAAATGGCATTCTCGTCTCCTTCGCTCCGTCTTCTTCCTCAG 60
Query 86 TCTCCGTTAGGTCGAATAACATCTAAACTACACCGTTTCAGT-ACTGCGAAACTCTCACT 144
||||| || || |||| |||| |||| ||||||||||||| | |||||||| ||||||
Sbjct 61 TCTCCATTCCATCTAATAGCATCAAAACGACACCGTTTCAGTGA-TGCGAAACCCTCACT 119
Query 145 CTTCTCCTTTCACCATGATTCTTCATCTTCTTTGGCTGTCAGAACTCCGGTA---TCTTC 201
|||||||||| ||||||| |||||||| ||||| | |||||||||||||| |||||
Sbjct 120 CTTCTCCTTTAACCATGAATCTTCATCGTCTTTCATTCTCAGAACTCCGGTATCTTCTTC 179
Query 202 CTTCGTCGTCGGCGCTATCTCCGGAAAATCCTCTACCGGAACGAAATCGAAATCCAAAAC 261
|||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 CTTCGTCGTCGGTGCGGTCTCCGGAAAATCCTCTACCGGGACGAAATCGAAATCCAAAAC 239
Query 262 CAAACGGAAACCACCTCCTCCTCCGCCAGTCACTACTGTGGCTGAAGAGCAACACATTGC 321
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 240 CAAACGGAAACCACCTCCTCCTCCGCCAGTTACTACTGTGGCTGAAGAGCAAGACATTGC 299
Query 322 TGAGTCAGAGACAGTCAACATTGCCGAAGATGTCACTCAATTGATTGGAAGCACACCAAT 381
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGAGTCAGAAACAGTCAACATTGCCGAAGATGTCACTCAATTGATTGGAAGCACACCAAT 359
Query 382 GGTCTATCTCAATAGAGTCACAGATGGTTGTTTGGCTGACATTGCTGCCAAGCTCGAATC 441
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GGTGTATCTCAATAGAGTCACTGATGGATGTTTGGCTGACATTGCTGCCAAGCTCGAATC 419
Query 442 AATGGAGCCCTGTAGAAGCGTCAAAGATAGGATCGGTCTGAGCATGATCAACGAGGCAGA 501
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 420 AATGGAGCCCTGTAGAAGCGTCAAGGATAGGATCGGTCTGAGCATGATCAATGAGGCAGA 479
Query 502 AAACAGCGGAGCTATAACTCCGAGGAAGACTGTATTAGTAGAACCAACAACCGGAAACAC 561
| ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 480 AGACAGCGGAGCTATAAGTCCCAGGAAGACTGTGTTAGTAGAACCAACAACCGGAAACAC 539
Query 562 TGGCCTTGGGATTGCATTTGTGGCTGCAGCTAAAGGCTACAAGCTTATAGTGACAATGCC 621
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 TGGCCTCGGGATTGCTTTTGTGGCTGCAGCTAAAGGCTACAAGCTTATCGTGACAATGCC 599
Query 622 AGCTTCTATCAATATTGAAAGGAGGATGCTTTTACGTGCACTAGGAGCAGAGATTGTGCT 681
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGCTTCTATCAATGTTGAAAGGAGGATGCTTTTACGTGCACTAGGAGCAGAGATTGTGCT 659
Query 682 AACGAATCCAGAGAAGGGTCTCAAAGGAGCAGTGGATAAAGCCAAAGAGATTGTTCTCAA 741
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 660 AACGAATCCAGAGAAGGGTCTCAGAGGAGCAGTGGATAAAGCCAAAGAGATTGTTCTCAA 719
Query 742 GACAAAGAACGCATATATGTTTCAGCAATTCGACAATACAGCAAATACAAAGATCCACTT 801
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 GACAAAGAACGCATATATGTTTCAGCAATTCGACAATACGGCAAATACAAAGATCCACTT 779
Query 802 TGAAACTACAGGACCAGAAATCTGGGAAGATACAATGGGTAATGTCGATATATTCGTTGC 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGAAACTACAGGACCAGAAATCTGGGAAGATACAATGGGTAATGTCGATATATTCGTTGC 839
Query 862 CGGAATAGGAACTGGTGGTACTGTAACTGGTACTGGAGGTTTCTTGAAAATGATGAACAA 921
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 CGGAATTGGAACTGGTGGTACTGTAACTGGTACTGGAGGTTTCTTAAAAATGATGAACAA 899
Query 922 GGATATTAAGGTAGTTGGCGTTGAACCATCAGAAAGAAGTGTGATTTCTGGAGACAA-CC 980
| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 900 GAATATTAAGGTAGTCGGCGTTGAACCATCAGAAAGAAGCGTGATTTCTGGAGACAATCC 959
Query 981 CTGGTTACTTACCGGGAATCTTGGATGTTAAATTACTTGATGAAGTGTTTAAGGTTAGCA 1040
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 C-GGTTACTTACCGGGAATCTTGGATGTTAAATTACTTGATGAAGTGTTTAAGGTTAGCA 1018
Query 1041 ACGGGGAAGCGATTGAGATGGCGAGGAGACTAGCTTTAGAGGAAGGATTGCTGGTTGGGA 1100
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1019 ACGGGGAAGCGATTGAGATGGCGAGGAGATTAGCTTTAGAGGAAGGATTGCTGGTTGGGA 1078
Query 1101 TTTCATCTGGAGCTGCTGCAGTAGCAGCAGTCAGCTTGGCTAAAAGAGCAGAGAATGCCG 1160
||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1079 TTTCATCTGGAGCCGCTGCAGTAGCAGCAATTAGCTTGGCTAAAAGAGCAGAGAATGCCG 1138
Query 1161 GTAAACTAATCACGGTTCTGTTTCCAAGCCATGGCGAGCGGTATATCACAACGGCTCTGT 1220
| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1139 GAAAACTTATCACGGTTCTGTTTCCGAGCCATGGCGAGCGGTATATCACAACGGCTTTGT 1198
Query 1221 TTAGTTCCATCAACAGAGAAGTCCAAGAGATGAGATATTAGTAGCAGCCATTAGAAAA 1278
||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTAGTTCCATCCACAAAGAGGTCCAAGAGATGAGATATTAGTAGCAGCCATTAGAAAA 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61249113960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5