BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03640.1
Length=1747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477608 jgi|Araly1|477608|fgenesh2_kg.3__309__AT3G03640.1 2774 0.0
Ahg906773 jgi|Araly1|906773|Al_scaffold_0003_3901 344 1e-93
> Ahg477608 jgi|Araly1|477608|fgenesh2_kg.3__309__AT3G03640.1
Length=1731
Score = 2774 bits (1502), Expect = 0.0
Identities = 1661/1737 (96%), Gaps = 13/1737 (1%)
Strand=Plus/Plus
Query 17 TGAAAAATGGCACTCAAAGCGATTCTCTTTTTGGGTTTATTTCTCGTCGTGA-TAGTTTC 75
|||||||||||||||||||||||||||||| ||||||||||||||| ||| | || |||
Sbjct 1 TGAAAAATGGCACTCAAAGCGATTCTCTTTCTGGGTTTATTTCTCGCCGTTATTA-CTTC 59
Query 76 TCCGATCACCGTCTACGGTGGAGCTGTGTGTCCGGC-GAGTTCCACGTTTGGTCGTGGAA 134
||||||||||||| | |||||||||||||||| || ||||||| |||||||||| ||||
Sbjct 60 TCCGATCACCGTCGAATGTGGAGCTGTGTGTCC-GCAGAGTTCCCCGTTTGGTCGAGGAA 118
Query 135 GCTTTCCTGATGGTTTCTTGTTCGGTGCTACAACTTCTGCTTTCCAGCATGAAGGTGCAG 194
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 119 GCTTTCCTGATGGTTTCTTGTTCGGTGCTTCAACTTCTGCTTTCCAGCATGAAGGTGCAC 178
Query 195 CAGAAGAAGGAGGCCGAGGTTCCAGCATTTGGGACTCATTCACTCTTAAACAACATTCAG 254
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 179 CAGAAGAAGGAGGCCGAGGTTCCAGCATTTGGGACTCATTCACTCTT--A-AACATTCAG 235
Query 255 AAAGCAACAACAATCTTGACGGCAGGCTCGGAGTTGATTTCTATCATCATTACAAGGAAG 314
|||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 236 AAAGCAACAATAATCTTGATGGCAGGCTTGGAGTTGATTTCTATCATCAGTACAAGGAAG 295
Query 315 ATGTTCAACTATTGAAAAAACTGAATATGGATGCCTTTAGGTTCTCTATATCTTGGTCAA 374
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 296 ATGTTCAACTATTGAAAAAACTGAACATGGATGCCTTTAGGTTCTCTATATCTTGGTCAA 355
Query 375 GAATATTTCCCCATGGGAAAAAAGACAAGGGAGTGAGTGAAACAGGAGTTAAATTCTACA 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAATATTTCCCCATGGGAAAAAAGACAAGGGAGTGAGTGAAACAGGAGTTAAATTCTACA 415
Query 435 ATGATCTTATCAACGAGCTCATTGCAAATGGTGTAACGCCTCTTG-TCACATTGTTTCAA 493
||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 416 ATGATCTTATCAACGAGCTCATTGCAAATGGTGTAACGCCT-TTGGTTACATTGTTTCAA 474
Query 494 TGGGATGTACCTCAGGCTCTTGAAGATGAATACGGCGGTTTCTTGAGTGACCGTATTTTG 553
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 475 TGGGATGTACCTCAGGCTCTTGAAGATGAATATGGTGGTTTCTTGAGTGACCGTATTTTG 534
Query 554 GAGGATTTCCGTGATTTTGCACAGTTTGCTTTCAATAAATATGGTGATAGAGTGAAGCAT 613
||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 535 GAGGATTTCCGGGATTTTGCACAGTTTGCCTTCAATGAATATGGTGATAGAGTGAAGCAT 594
Query 614 TGGGTTACTATAAACGAACCTTATGAATTTAGTCGTGGTGGATACGAGACTGGAGAGAAA 673
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGGGTTACTATAAACGAGCCTTATGAATTTAGTCGTGGTGGATACGAGACTGGAGAGAAA 654
Query 674 GCACCAGGAAGATGTTCTAAATATGTCAATGAGAAATGTGTTGCAGGCAAGAGTGGCCAT 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 GCACCAGGAAGATGTTCTAAATATGTCAATGAGAAATGTGTTGCAGGCAAGAGTGGTCAT 714
Query 734 GAAGTTTACACTGTTAGTCACAATCTGCTGTTGGCTCATGCCGAAGCTGTGGAAGAATTC 793
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 715 GAAGTTTACACCGTTAGTCACAATTTGCTGTTGGCTCATGCCGAAGCTGTGGAAGAATTC 774
Query 794 AGGAAATGTGGAAAGTGCACAGGTGGAAAGATCGGAATTGTTCAAAGTCCAATGTGGTTT 853
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AGGAAATGCGGAAAGTGCAAAGGTGGAAAGATCGGAATTGTTCAAAGTCCAATGTGGTTT 834
Query 854 GAGCCTTATGATAAGAAATCCACCTCGAGTCCTTCAGAGGAGATAGTGAAGAGAGCTATG 913
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 835 GAGCCTTATGATAAGAAATCCAGCTCAAGTCCTTCAGAGGAGATAGTGAAGAGAGCTATG 894
Query 914 GATTTCACTCTAGGCTGGCATATGGAGCCAATAACACATGGAGATTACCCTCAGGCCATG 973
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 895 GATTTCACTCTAGGCTGGCATATGGAACCAATAACACATGGAGATTACCCTCAGACCATG 954
Query 974 AAAGATGTTGTTGGTAGTCGATTACCATCTTTTACGCCCGAGCAGAAGGAGAAACTGAAG 1033
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 955 AAAGATGTTGTTGGTGGTCGATTACCATCTTTTACGCCTGAGCAGAAGGAGAAACTGAAG 1014
Query 1034 GGTTCTTATGATTTTGTCGGTATCAATTACTTCACTTCTACATTTGTTGCTCATACGGAC 1093
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1015 GGTTCTTATGATTTTGTCGGTATCAATTACTTCACTTCTACATTTGTTTCTCATGTAGAC 1074
Query 1094 AATGTTAATCCAGAGAAACCGAGTTGGGAAGCTGATTCTCGCTTGCAGTTACATTCGAAT 1153
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1075 AATGTTAATCCAGAGAAACCGAGTTGGGAAGCTGATTCTCGCTTGCAATTACATTCGAAT 1134
Query 1154 AACGTTGATGGGTTCAAGATTGGTTCTCAGCCTGCTACTGCGAAGTATCCTGTTTGCGCT 1213
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1135 AACGTTGATGGGTTCAAGATTGGTTCTCAGCCGGCTACTGCGAAGTATCCAGTTTGCGCA 1194
Query 1214 GACGGGTTAAGAAAAGTTTTGAAATACATCAAAGAGAACTACAATGACCCAGAAATCATA 1273
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1195 GACGGGTTAAGAAAAGTTTTGAAATACATCAAAGAGAACTATAACGACCCAGAAATCATA 1254
Query 1274 GTCACTGGAAACGGGTACAAGGAGACACTTGAAGAGAAAGATGTACTTCCAGATGCCCTC 1333
||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||
Sbjct 1255 GTCACTGGAAATGGGTACAAGGAGAAACTTGAAGAGAAAGATGTGCTTCCCGATGCCCTC 1314
Query 1334 AGCGATAGTAACAGGAAGTATTATCATATGAGACATCTCATGGCATTACATGGAGCAGTC 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AGCGATAGTAACAGGAAGTATTATCATATGAGACATCTCATGGCATTACATGGAGCAGTC 1374
Query 1394 TGCGAGGACAAGGTTAATGTTAAAGGTTACTTTGTGTCGTCGCTTATGGATGGACTAGAG 1453
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 1375 TGCGAGGACAAGGTTAATGTTAAAGGGTACTTTGTGTGGTCGCTTATGGATGGCCTAGAG 1434
Query 1454 TGGGAAGATGGATACAAGACGAGGTCTGGACTGTACTATGTAGACTATGGACACAATATG 1513
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1435 TGGGAAGATGAATACAAGACAAGGTCTGGACTGTACTATGTAGACTATGGACACAATTTG 1494
Query 1514 GGACGGCATGAGAAACAATCTGCCAAGTGGCTCTCCAAGCTCCTTGAGAAAGTCCCGGAC 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GGACGGCATGAGAAACAATCTGCCAAGTGGCTCTCCAAGCTCCTTGAGAAAGTCCCGGAC 1554
Query 1574 ACGATTCAGTCGAAGGTAGATTCGGATTCAAGGAAAGAGTTATAAATGATCAGAGATCCT 1633
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ACGATTCAGTCGAATGTAGATTCGGATTCAAGGAAAGAGTTATAAATGATCAGAGATCCT 1614
Query 1634 TTTCGCAACTCTGTTTAATCGATCATATGATGTTATGTGTGTTTTTATCTTAAAAGAGTG 1693
||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1615 CTTCGCAACTCTGTTTTACCGATCATATGATGTAATGTGTGTTTTTATCTTAAAAGAGTG 1674
Query 1694 TAATCCACGATCTATGTAGTTTATATA-ATAA-ATA--AAGAAGTAACTTATATCAC 1746
||| ||||||| ||||||||||||||| |||| | | |||||||||||||| ||||
Sbjct 1675 TAAGCCACGATATATGTAGTTTATATATATAATAAATGAAGAAGTAACTTATGTCAC 1731
> Ahg906773 jgi|Araly1|906773|Al_scaffold_0003_3901
Length=282
Score = 344 bits (186), Expect = 1e-93
Identities = 206/216 (95%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 1180 TCAGCCTGCTACTGCGAAGTATCCTGTTTGCGCTGACGGGTTAAGAAAAGTTTTGAAATA 1239
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 6 TCAGCCGGCTACTGCGAAGTATCCAGTTTGCGCAGACGGGTTAAGAAAAGTTTTGAAATA 65
Query 1240 CATCAAAGAGAACTACAATGACCCAGAAATCATAGTCACTGGAAACGGGTACAAGGAGAC 1299
||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 66 CATCAAAGAGAACTATAACGACCCAGAAATCATAGTCACTGGAAATGGGTACAAGGAGAA 125
Query 1300 ACTTGAAGAGAAAGATGTACTTCCAGATGCCCTCAGCGATAGTAACAGGAAGTATTATCA 1359
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 126 ACTTGAAGAGAAAGATGTGCTTCCCCATGCCCTCAGCGATAGTAACAGGAAGTATTATCA 185
Query 1360 TATGAGACATCTCATGGCATTACATGGAGCAGTCTG 1395
||||||||||||||||||||||||||||||||||||
Sbjct 186 TATGAGACATCTCATGGCATTACATGGAGCAGTCTG 221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65553311645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5